RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 HOXB1P14653 301 aaPredicted RBP10.09□□□□□ -0.79
PTCD3-214ENST00000483925 RGL2O15211 777 aa10.08□□□□□ -0.8
PTCD3-214ENST00000483925 POTEB3A0JP26 581 aa10.07□□□□□ -0.8
PTCD3-214ENST00000483925 POTEBQ6S5H4 581 aa10.07□□□□□ -0.8
PTCD3-214ENST00000483925 MFRPQ9BY79 579 aa10.07□□□□□ -0.8
PTCD3-214ENST00000483925 SPNS2Q8IVW8 549 aa10.06□□□□□ -0.8
PTCD3-214ENST00000483925 MMRN1Q13201 1228 aa10.03□□□□□ -0.8
PTCD3-214ENST00000483925 ZSWIM6Q9HCJ5 1215 aa10.03□□□□□ -0.8
PTCD3-214ENST00000483925 ERBB3P21860 1342 aa10.03□□□□□ -0.8
PTCD3-214ENST00000483925 KRTAP3-3Q9BYR6 98 aa10.01□□□□□ -0.81
PTCD3-214ENST00000483925 KRTAP3-2Q9BYR7 98 aa10.01□□□□□ -0.81
PTCD3-214ENST00000483925 AMER1Q5JTC6 1135 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-214ENST00000483925 GPR153Q6NV75 609 aa9.98□□□□□ -0.81
PTCD3-214ENST00000483925 VARS2Q5ST30 1063 aaKnown RBP9.95□□□□□ -0.82
PTCD3-214ENST00000483925 C2orf72A6NCS6 295 aa9.93□□□□□ -0.82
PTCD3-214ENST00000483925 KIF3CO14782 793 aa9.93□□□□□ -0.82
PTCD3-214ENST00000483925 ARSIQ5FYB1 569 aa9.93□□□□□ -0.82
PTCD3-214ENST00000483925 ZNF687Q8N1G0 1237 aa9.9□□□□□ -0.82
PTCD3-214ENST00000483925 RTN4Q9NQC3 1192 aaKnown RBP9.9□□□□□ -0.82
PTCD3-214ENST00000483925 TMC2Q8TDI7 906 aa9.89□□□□□ -0.83
PTCD3-214ENST00000483925 PPP1R37O75864 691 aa9.88□□□□□ -0.83
PTCD3-214ENST00000483925 HS6ST3Q8IZP7 471 aa9.88□□□□□ -0.83
PTCD3-214ENST00000483925 KHSRPQ92945 711 aaKnown RBP eCLIP9.87□□□□□ -0.83
PTCD3-214ENST00000483925 ZNF316A6NFI3 1004 aaPredicted RBP9.85□□□□□ -0.83
PTCD3-214ENST00000483925 SLC34A2O95436 690 aa9.84□□□□□ -0.83
PTCD3-214ENST00000483925 CHGAP10645 457 aaKnown RBP9.84□□□□□ -0.83
PTCD3-214ENST00000483925 NUDT7P0C024 238 aa9.81□□□□□ -0.84
PTCD3-214ENST00000483925 PCDHGA4Q9Y5G9 962 aa9.81□□□□□ -0.84
PTCD3-214ENST00000483925 DNAJC5Q9H3Z4 198 aa9.76□□□□□ -0.85
PTCD3-214ENST00000483925 GPHNQ9NQX3 736 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-214ENST00000483925 MYT1LQ9UL68 1186 aa9.76□□□□□ -0.85
PTCD3-214ENST00000483925 LHX6Q9UPM6 363 aa9.76□□□□□ -0.85
PTCD3-214ENST00000483925 FOXK1P85037 733 aa9.75□□□□□ -0.85
PTCD3-214ENST00000483925 ANKRD13DQ6ZTN6 518 aa9.75□□□□□ -0.85
PTCD3-214ENST00000483925 RNF166Q96A37 237 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-214ENST00000483925 RYDENQ9NUL5 291 aaKnown RBP9.75□□□□□ -0.85
PTCD3-214ENST00000483925 PTGER2P43116 358 aa9.74□□□□□ -0.85
PTCD3-214ENST00000483925 PLPP6Q8IY26 295 aa9.74□□□□□ -0.85
PTCD3-214ENST00000483925 PBX2P40425 430 aa9.73□□□□□ -0.85
PTCD3-214ENST00000483925 LSM11P83369 360 aaKnown RBP eCLIP9.73□□□□□ -0.85
PTCD3-214ENST00000483925 NKX1-1Q15270 411 aaPredicted RBP9.73□□□□□ -0.85
PTCD3-214ENST00000483925 PTCD2Q8WV60 388 aaKnown RBP9.73□□□□□ -0.85
PTCD3-214ENST00000483925 PSDA5PKW4 1024 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-214ENST00000483925 DSG2Q14126 1118 aa9.7□□□□□ -0.86
PTCD3-214ENST00000483925 KDM4FA0A1W2PPD8 638 aa9.68□□□□□ -0.86
PTCD3-214ENST00000483925 TBC1D12O60347 775 aa9.68□□□□□ -0.86
PTCD3-214ENST00000483925 POTEEQ6S8J3 1075 aa9.67□□□□□ -0.86
PTCD3-214ENST00000483925 AXIN2Q9Y2T1 843 aa9.67□□□□□ -0.86
PTCD3-214ENST00000483925 ARHGAP33O14559 1287 aa9.64□□□□□ -0.87
PTCD3-214ENST00000483925 CRISPLD2Q9H0B8 497 aa9.63□□□□□ -0.87
PTCD3-214ENST00000483925 GTPBP6O43824 516 aaPredicted RBP9.6□□□□□ -0.87
PTCD3-214ENST00000483925 PDE4AP27815 886 aa9.6□□□□□ -0.87
PTCD3-214ENST00000483925 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
PTCD3-214ENST00000483925 DCAF8L2P0C7V8 631 aa9.59□□□□□ -0.87
PTCD3-214ENST00000483925 PPP1R15BQ5SWA1 713 aa9.59□□□□□ -0.87
PTCD3-214ENST00000483925 OXER1Q8TDS5 423 aa9.59□□□□□ -0.87
PTCD3-214ENST00000483925 ADGRD1Q6QNK2 874 aa9.58□□□□□ -0.88
PTCD3-214ENST00000483925 UPF1Q92900 1129 aaKnown RBP eCLIP9.58□□□□□ -0.88
PTCD3-214ENST00000483925 NCKAP5LQ9HCH0 1330 aa9.56□□□□□ -0.88
PTCD3-214ENST00000483925 TK2O00142 265 aa9.56□□□□□ -0.88
PTCD3-214ENST00000483925 PSEN2P49810 448 aa9.55□□□□□ -0.88
PTCD3-214ENST00000483925 DMRTA1Q5VZB9 504 aa9.54□□□□□ -0.88
PTCD3-214ENST00000483925 KCNH8Q96L42 1107 aa9.54□□□□□ -0.88
PTCD3-214ENST00000483925 LARP6Q9BRS8 491 aaKnown RBP9.53□□□□□ -0.88
PTCD3-214ENST00000483925 DDX27Q96GQ7 796 aaKnown RBP9.51□□□□□ -0.89
PTCD3-214ENST00000483925 KCNK17Q96T54 332 aa9.51□□□□□ -0.89
PTCD3-214ENST00000483925 HRO43593 1189 aa9.5□□□□□ -0.89
PTCD3-214ENST00000483925 ZNF454Q8N9F8 522 aa9.5□□□□□ -0.89
PTCD3-214ENST00000483925 STAC3Q96MF2 364 aa9.49□□□□□ -0.89
PTCD3-214ENST00000483925 HCSTQ9UBK5 93 aa9.49□□□□□ -0.89
PTCD3-214ENST00000483925 ANO8Q9HCE9 1232 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-214ENST00000483925 MFSD10Q14728 455 aa9.47□□□□□ -0.89
PTCD3-214ENST00000483925 BCL2L12Q9HB09 334 aa9.47□□□□□ -0.89
PTCD3-214ENST00000483925 EVI5O60447 810 aa9.46□□□□□ -0.9
PTCD3-214ENST00000483925 FOSBP53539 338 aa9.46□□□□□ -0.9
PTCD3-214ENST00000483925 MAP3K9P80192 1104 aa9.46□□□□□ -0.9
PTCD3-214ENST00000483925 VPS9D1Q9Y2B5 631 aa9.45□□□□□ -0.9
PTCD3-214ENST00000483925 PTPREP23469 700 aa9.43□□□□□ -0.9
PTCD3-214ENST00000483925 JPH4Q96JJ6 628 aa9.43□□□□□ -0.9
PTCD3-214ENST00000483925 SLC4A5Q9BY07 1137 aa9.43□□□□□ -0.9
PTCD3-214ENST00000483925 CADPS2Q86UW7 1296 aa9.41□□□□□ -0.9
PTCD3-214ENST00000483925 ZDHHC16Q969W1 377 aa9.41□□□□□ -0.9
PTCD3-214ENST00000483925 KCTD12Q96CX2 325 aaKnown RBP9.41□□□□□ -0.9
PTCD3-214ENST00000483925 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
PTCD3-214ENST00000483925 PLA2G2EQ9NZK7 142 aa9.4□□□□□ -0.9
PTCD3-214ENST00000483925 ADAM33Q9BZ11 813 aa9.38□□□□□ -0.91
PTCD3-214ENST00000483925 ZBED2Q9BTP6 218 aa9.37□□□□□ -0.91
PTCD3-214ENST00000483925 BHMG1C9JSJ3 638 aaPredicted RBP9.36□□□□□ -0.91
PTCD3-214ENST00000483925 BBXQ8WY36 941 aaPredicted RBP9.36□□□□□ -0.91
PTCD3-214ENST00000483925 PCDHGA10Q9Y5H3 936 aa9.34□□□□□ -0.91
PTCD3-214ENST00000483925 GOLGA8CPA6NN73 597 aa9.33□□□□□ -0.92
PTCD3-214ENST00000483925 CAMK2BQ13554 666 aa9.33□□□□□ -0.92
PTCD3-214ENST00000483925 MRPL50Q8N5N7 158 aaKnown RBP9.33□□□□□ -0.92
PTCD3-214ENST00000483925 PTPN5P54829 565 aa9.32□□□□□ -0.92
PTCD3-214ENST00000483925 TYW1BQ6NUM6 668 aa9.32□□□□□ -0.92
PTCD3-214ENST00000483925 FBXW7Q969H0 707 aa9.32□□□□□ -0.92
PTCD3-214ENST00000483925 PPP1R3GB7ZBB8 358 aa9.31□□□□□ -0.92
PTCD3-214ENST00000483925 PHF14O94880 888 aa9.31□□□□□ -0.92
PTCD3-214ENST00000483925 NBPF3Q9H094 633 aa9.31□□□□□ -0.92
PTCD3-214ENST00000483925 DPYSL4O14531 572 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms