RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.97■□□□□ 0.313e-6■■□□□ 11.4
VPS52-218ENST00000482399 FYCO1Q9BQS8 1478 aa16.96■□□□□ 0.31
VPS52-218ENST00000482399 PLIN1O60240 522 aa16.96■□□□□ 0.31
VPS52-218ENST00000482399 CC2D1BQ5T0F9 858 aaKnown RBP16.96■□□□□ 0.31
VPS52-218ENST00000482399 DCAF11Q8TEB1 546 aa16.95■□□□□ 0.3
VPS52-218ENST00000482399 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
VPS52-218ENST00000482399 MAP3K1Q13233 1512 aa16.93■□□□□ 0.3
VPS52-218ENST00000482399 NESP48681 1621 aa16.91■□□□□ 0.3
VPS52-218ENST00000482399 ST20-MTHFSA0A0A6YYL1 179 aa16.91■□□□□ 0.3
VPS52-218ENST00000482399 SLC4A3P48751 1232 aa16.91■□□□□ 0.3
VPS52-218ENST00000482399 RCAN3Q9UKA8 241 aa16.9■□□□□ 0.3
VPS52-218ENST00000482399 EIF5BO60841 1220 aaKnown RBP16.89■□□□□ 0.29
VPS52-218ENST00000482399 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.89■□□□□ 0.29
VPS52-218ENST00000482399 USP47Q96K76 1375 aa16.88■□□□□ 0.29
VPS52-218ENST00000482399 IL27Q8NEV9 243 aa16.88■□□□□ 0.29
VPS52-218ENST00000482399 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
VPS52-218ENST00000482399 ARXQ96QS3 562 aa16.86■□□□□ 0.29
VPS52-218ENST00000482399 PTPN23Q9H3S7 1636 aa16.86■□□□□ 0.29
VPS52-218ENST00000482399 POLA1P09884 1462 aaPredicted RBP16.86■□□□□ 0.29
VPS52-218ENST00000482399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS52-218ENST00000482399 CDCA7LQ96GN5 454 aa16.86■□□□□ 0.29
VPS52-218ENST00000482399 RGS3P49796 1198 aa16.85■□□□□ 0.29
VPS52-218ENST00000482399 PDE4AP27815 886 aa16.85■□□□□ 0.29
VPS52-218ENST00000482399 ANO8Q9HCE9 1232 aaPredicted RBP16.84■□□□□ 0.29
VPS52-218ENST00000482399 TSPY4P0CV99 314 aa16.84■□□□□ 0.29
VPS52-218ENST00000482399 TSPY10P0CW01 314 aa16.84■□□□□ 0.29
VPS52-218ENST00000482399 RRP1P56182 461 aaKnown RBP16.83■□□□□ 0.28
VPS52-218ENST00000482399 PNISRQ8TF01 805 aaKnown RBP16.82■□□□□ 0.28
VPS52-218ENST00000482399 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
VPS52-218ENST00000482399 NCOA1Q15788 1441 aa16.81■□□□□ 0.28
VPS52-218ENST00000482399 NUP155O75694 1391 aa16.8■□□□□ 0.28
VPS52-218ENST00000482399 GAPVD1Q14C86 1478 aa16.78■□□□□ 0.28
VPS52-218ENST00000482399 TOPBP1Q92547 1522 aa16.77■□□□□ 0.28
VPS52-218ENST00000482399 CDK13Q14004 1512 aaKnown RBP16.77■□□□□ 0.27
VPS52-218ENST00000482399 EFCAB5A4FU69 1503 aa16.76■□□□□ 0.27
VPS52-218ENST00000482399 ANKRD30BQ9BXX2 1392 aa16.76■□□□□ 0.27
VPS52-218ENST00000482399 TCERG1O14776 1098 aaKnown RBP16.76■□□□□ 0.27
VPS52-218ENST00000482399 CRBNQ96SW2 442 aa16.76■□□□□ 0.27
VPS52-218ENST00000482399 SMG6Q86US8 1419 aaKnown RBP16.75■□□□□ 0.27
VPS52-218ENST00000482399 CANXP27824 592 aaKnown RBP16.75■□□□□ 0.27
VPS52-218ENST00000482399 CHMP7Q8WUX9 453 aaPredicted RBP16.75■□□□□ 0.27
VPS52-218ENST00000482399 PDS5BQ9NTI5 1447 aa16.74■□□□□ 0.27
VPS52-218ENST00000482399 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS52-218ENST00000482399 CFAP43Q8NDM7 1665 aa16.73■□□□□ 0.27
VPS52-218ENST00000482399 MYBBP1AQ9BQG0 1328 aaKnown RBP16.73■□□□□ 0.27
VPS52-218ENST00000482399 ROCK2O75116 1388 aaKnown RBP16.73■□□□□ 0.27
VPS52-218ENST00000482399 PLEKHD1A6NEE1 506 aa16.72■□□□□ 0.27
VPS52-218ENST00000482399 HNRNPMP52272 730 aaKnown RBP eCLIP16.72■□□□□ 0.27
VPS52-218ENST00000482399 NLRP13Q86W25 1043 aa16.71■□□□□ 0.27
VPS52-218ENST00000482399 PPM1GO15355 546 aaPredicted RBP16.71■□□□□ 0.27
VPS52-218ENST00000482399 SNAPC4Q5SXM2 1469 aa16.71■□□□□ 0.26
VPS52-218ENST00000482399 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
VPS52-218ENST00000482399 KIF15Q9NS87 1388 aa16.7■□□□□ 0.26
VPS52-218ENST00000482399 RALBP1Q15311 655 aa16.7■□□□□ 0.26
VPS52-218ENST00000482399 KTN1Q86UP2 1357 aaKnown RBP16.69■□□□□ 0.26
VPS52-218ENST00000482399 NEUROD2Q15784 382 aa16.68■□□□□ 0.26
VPS52-218ENST00000482399 NBPF1Q3BBV0 1214 aa16.68■□□□□ 0.26
VPS52-218ENST00000482399 SUPT6HQ7KZ85 1726 aaKnown RBP16.68■□□□□ 0.26
VPS52-218ENST00000482399 EHBP1L1Q8N3D4 1523 aa16.68■□□□□ 0.26
VPS52-218ENST00000482399 SENP3Q9H4L4 574 aaPredicted RBP16.67■□□□□ 0.26
VPS52-218ENST00000482399 PANK3Q9H999 370 aa16.67■□□□□ 0.26
VPS52-218ENST00000482399 BRPF3Q9ULD4 1205 aa16.67■□□□□ 0.26
VPS52-218ENST00000482399 CCDC146Q8IYE0 955 aa16.66■□□□□ 0.26
VPS52-218ENST00000482399 DDRGK1Q96HY6 314 aa16.66■□□□□ 0.26
VPS52-218ENST00000482399 KDM6BO15054 1643 aa16.65■□□□□ 0.26
VPS52-218ENST00000482399 C20orf194Q5TEA3 1177 aa16.65■□□□□ 0.26
VPS52-218ENST00000482399 BACH2Q9BYV9 841 aa16.65■□□□□ 0.26
VPS52-218ENST00000482399 DAPK1P53355 1430 aa16.65■□□□□ 0.26
VPS52-218ENST00000482399 RPRD2Q5VT52 1461 aaKnown RBP16.65■□□□□ 0.26
VPS52-218ENST00000482399 EPRSP07814 1512 aaKnown RBP16.64■□□□□ 0.25
VPS52-218ENST00000482399 KNSTRNQ9Y448 316 aa16.64■□□□□ 0.25
VPS52-218ENST00000482399 GRIN2BQ13224 1484 aa16.63■□□□□ 0.25
VPS52-218ENST00000482399 ANKRD30AQ9BXX3 1397 aa16.63■□□□□ 0.25
VPS52-218ENST00000482399 ABCC5O15440 1437 aa16.62■□□□□ 0.25
VPS52-218ENST00000482399 TNNT2P45379 298 aaPredicted RBP16.62■□□□□ 0.25
VPS52-218ENST00000482399 PRG4Q92954 1404 aaPredicted RBP16.62■□□□□ 0.25
VPS52-218ENST00000482399 DHX29Q7Z478 1369 aaKnown RBP16.62■□□□□ 0.25
VPS52-218ENST00000482399 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
VPS52-218ENST00000482399 MAGI3Q5TCQ9 1506 aa16.61■□□□□ 0.25
VPS52-218ENST00000482399 FRAT1Q92837 279 aaPredicted RBP16.6■□□□□ 0.25
VPS52-218ENST00000482399 SPRYD3Q8NCJ5 442 aa16.6■□□□□ 0.25
VPS52-218ENST00000482399 DENND4BO75064 1496 aaPredicted RBP16.59■□□□□ 0.25
VPS52-218ENST00000482399 SLKQ9H2G2 1235 aaPredicted RBP16.59■□□□□ 0.25
VPS52-218ENST00000482399 KDM5BQ9UGL1 1544 aa16.59■□□□□ 0.25
VPS52-218ENST00000482399 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.59■□□□□ 0.25
VPS52-218ENST00000482399 UGGT2Q9NYU1 1516 aa16.59■□□□□ 0.25
VPS52-218ENST00000482399 ADAMTS8Q9UP79 889 aa16.58■□□□□ 0.25
VPS52-218ENST00000482399 NFKBIBQ15653 356 aa16.58■□□□□ 0.24
VPS52-218ENST00000482399 MIA2Q96PC5 1412 aa16.57■□□□□ 0.24
VPS52-218ENST00000482399 CC2D2AQ9P2K1 1620 aa16.57■□□□□ 0.24
VPS52-218ENST00000482399 TMF1P82094 1093 aa16.57■□□□□ 0.24
VPS52-218ENST00000482399 PRDM2Q13029 1718 aa16.57■□□□□ 0.24
VPS52-218ENST00000482399 THOC2Q8NI27 1593 aaKnown RBP16.56■□□□□ 0.24
VPS52-218ENST00000482399 PDE3BQ13370 1112 aa16.56■□□□□ 0.24
VPS52-218ENST00000482399 ANKRD50Q9ULJ7 1429 aa16.56■□□□□ 0.24
VPS52-218ENST00000482399 BRD4O60885 1362 aaPredicted RBP16.56■□□□□ 0.24
VPS52-218ENST00000482399 GSE1Q14687 1217 aa16.56■□□□□ 0.24
VPS52-218ENST00000482399 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
VPS52-218ENST00000482399 KIAA1107Q9UPP5 1409 aa16.55■□□□□ 0.24
VPS52-218ENST00000482399 CHGAP10645 457 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms