RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 BMP2KQ9NSY1 1161 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-205ENST00000479712 NCKAP5LQ9HCH0 1330 aa11.12□□□□□ -0.63
UPF3A-205ENST00000479712 PDE4AP27815 886 aa11.11□□□□□ -0.63
UPF3A-205ENST00000479712 TIE1P35590 1138 aa11.11□□□□□ -0.63
UPF3A-205ENST00000479712 LARP6Q9BRS8 491 aaKnown RBP11.11□□□□□ -0.63
UPF3A-205ENST00000479712 TULP1O00294 542 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-205ENST00000479712 LMOD2Q6P5Q4 547 aa11.1□□□□□ -0.63
UPF3A-205ENST00000479712 CECR2Q9BXF3 1484 aa11.1□□□□□ -0.63
UPF3A-205ENST00000479712 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.09□□□□□ -0.63
UPF3A-205ENST00000479712 TTLL13PA6NNM8 815 aa11.08□□□□□ -0.64
UPF3A-205ENST00000479712 MFSD10Q14728 455 aa11.07□□□□□ -0.64
UPF3A-205ENST00000479712 CRISPLD2Q9H0B8 497 aa11.07□□□□□ -0.64
UPF3A-205ENST00000479712 DDX27Q96GQ7 796 aaKnown RBP11.06□□□□□ -0.64
UPF3A-205ENST00000479712 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.05□□□□□ -0.64
UPF3A-205ENST00000479712 RB1CC1Q8TDY2 1594 aa11.03□□□□□ -0.64
UPF3A-205ENST00000479712 SEMA3EO15041 775 aa11.02□□□□□ -0.65
UPF3A-205ENST00000479712 ILDR1Q86SU0 546 aaPredicted RBP11.02□□□□□ -0.65
UPF3A-205ENST00000479712 TRIM35Q9UPQ4 493 aa11.02□□□□□ -0.65
UPF3A-205ENST00000479712 COLQQ9Y215 455 aaPredicted RBP11.02□□□□□ -0.65
UPF3A-205ENST00000479712 TESPA1A2RU30 521 aaPredicted RBP11□□□□□ -0.65
UPF3A-205ENST00000479712 SEC24BO95487 1268 aa10.97□□□□□ -0.65
UPF3A-205ENST00000479712 CAMK2BQ13554 666 aa10.97□□□□□ -0.65
UPF3A-205ENST00000479712 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
UPF3A-205ENST00000479712 CC2D2AQ9P2K1 1620 aa10.96□□□□□ -0.65
UPF3A-205ENST00000479712 ARIH1Q9Y4X5 557 aaPredicted RBP10.96□□□□□ -0.65
UPF3A-205ENST00000479712 PPP1R15BQ5SWA1 713 aa10.94□□□□□ -0.66
UPF3A-205ENST00000479712 SMYD5Q6GMV2 418 aa10.94□□□□□ -0.66
UPF3A-205ENST00000479712 GPHNQ9NQX3 736 aaPredicted RBP10.94□□□□□ -0.66
UPF3A-205ENST00000479712 DPY19L2Q6NUT2 758 aa10.93□□□□□ -0.66
UPF3A-205ENST00000479712 CDAN1Q8IWY9 1227 aa10.93□□□□□ -0.66
UPF3A-205ENST00000479712 IER5LQ5T953 404 aa10.92□□□□□ -0.66
UPF3A-205ENST00000479712 ZC3H15Q8WU90 426 aaKnown RBP10.92□□□□□ -0.66
UPF3A-205ENST00000479712 MICALL2Q8IY33 904 aa10.91□□□□□ -0.66
UPF3A-205ENST00000479712 PDCD7Q8N8D1 485 aaKnown RBP10.9□□□□□ -0.66
UPF3A-205ENST00000479712 CUX2O14529 1486 aa10.89□□□□□ -0.67
UPF3A-205ENST00000479712 TMC2Q8TDI7 906 aa10.87□□□□□ -0.67
UPF3A-205ENST00000479712 UNC13AQ9UPW8 1703 aa10.87□□□□□ -0.67
UPF3A-205ENST00000479712 IRX5P78411 483 aaPredicted RBP10.86□□□□□ -0.67
UPF3A-205ENST00000479712 DSG2Q14126 1118 aa10.86□□□□□ -0.67
UPF3A-205ENST00000479712 ST18O60284 1047 aa10.85□□□□□ -0.67
UPF3A-205ENST00000479712 SLAIN1Q8ND83 568 aa10.85□□□□□ -0.67
UPF3A-205ENST00000479712 OCEL1Q9H607 264 aa10.85□□□□□ -0.67
UPF3A-205ENST00000479712 G3V3G9 751 aa10.84□□□□□ -0.67
UPF3A-205ENST00000479712 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
UPF3A-205ENST00000479712 DPYSL4O14531 572 aa10.83□□□□□ -0.68
UPF3A-205ENST00000479712 TMEM132AQ24JP5 1023 aa10.83□□□□□ -0.68
UPF3A-205ENST00000479712 MLLT3P42568 568 aaPredicted RBP10.82□□□□□ -0.68
UPF3A-205ENST00000479712 FOXK1P85037 733 aa10.82□□□□□ -0.68
UPF3A-205ENST00000479712 EMILIN3Q9NT22 766 aa10.82□□□□□ -0.68
UPF3A-205ENST00000479712 TMEM121BQ9BXQ6 578 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-205ENST00000479712 SLC24A3Q9HC58 644 aa10.81□□□□□ -0.68
UPF3A-205ENST00000479712 BICRAQ9NZM4 1560 aa10.81□□□□□ -0.68
UPF3A-205ENST00000479712 ZMYND10O75800 440 aa10.8□□□□□ -0.68
UPF3A-205ENST00000479712 PLCG2P16885 1265 aa10.8□□□□□ -0.68
UPF3A-205ENST00000479712 SPDYE16A6NNV3 312 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-205ENST00000479712 BRPF1P55201 1214 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-205ENST00000479712 PDIA6Q15084 440 aa10.78□□□□□ -0.68
UPF3A-205ENST00000479712 RBM26Q5T8P6 1007 aaKnown RBP10.78□□□□□ -0.68
UPF3A-205ENST00000479712 PLPP6Q8IY26 295 aa10.78□□□□□ -0.68
UPF3A-205ENST00000479712 C2orf72A6NCS6 295 aa10.77□□□□□ -0.69
UPF3A-205ENST00000479712 GPIHBP1Q8IV16 184 aa10.77□□□□□ -0.69
UPF3A-205ENST00000479712 GTF3C3Q9Y5Q9 886 aa10.77□□□□□ -0.69
UPF3A-205ENST00000479712 KIF3CO14782 793 aa10.76□□□□□ -0.69
UPF3A-205ENST00000479712 L3MBTL3Q96JM7 780 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-205ENST00000479712 NEUROD2Q15784 382 aa10.74□□□□□ -0.69
UPF3A-205ENST00000479712 BARGINQ6ZT62 677 aa10.73□□□□□ -0.69
UPF3A-205ENST00000479712 MAP3K9P80192 1104 aa10.7□□□□□ -0.7
UPF3A-205ENST00000479712 MMRN1Q13201 1228 aa10.68□□□□□ -0.7
UPF3A-205ENST00000479712 SPNS2Q8IVW8 549 aa10.68□□□□□ -0.7
UPF3A-205ENST00000479712 TMEM92Q6UXU6 159 aa10.67□□□□□ -0.7
UPF3A-205ENST00000479712 KRI1Q8N9T8 703 aaKnown RBP10.67□□□□□ -0.7
UPF3A-205ENST00000479712 UPF1Q92900 1129 aaKnown RBP eCLIP10.67□□□□□ -0.7
UPF3A-205ENST00000479712 AK7Q96M32 723 aa10.66□□□□□ -0.7
UPF3A-205ENST00000479712 TIMELESSQ9UNS1 1208 aa10.66□□□□□ -0.7
UPF3A-205ENST00000479712 GRXCR2A6NFK2 248 aa10.64□□□□□ -0.71
UPF3A-205ENST00000479712 SNPHO15079 494 aa10.63□□□□□ -0.71
UPF3A-205ENST00000479712 OXER1Q8TDS5 423 aa10.63□□□□□ -0.71
UPF3A-205ENST00000479712 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.63□□□□□ -0.71
UPF3A-205ENST00000479712 NACADO15069 1562 aa10.63□□□□□ -0.71
UPF3A-205ENST00000479712 EIF4G1Q04637 1599 aaKnown RBP10.63□□□□□ -0.71
UPF3A-205ENST00000479712 ERCC6Q03468 1493 aa10.62□□□□□ -0.71
UPF3A-205ENST00000479712 ERICH6Q7L0X2 663 aa10.6□□□□□ -0.71
UPF3A-205ENST00000479712 MARVELD3Q96A59 401 aa10.6□□□□□ -0.71
UPF3A-205ENST00000479712 GPR37O15354 613 aa10.59□□□□□ -0.71
UPF3A-205ENST00000479712 TBC1D12O60347 775 aa10.59□□□□□ -0.71
UPF3A-205ENST00000479712 C3orf67Q6ZVT6 689 aa10.59□□□□□ -0.71
UPF3A-205ENST00000479712 NUTM2FA1L443 756 aa10.58□□□□□ -0.72
UPF3A-205ENST00000479712 OSBPP22059 807 aa10.57□□□□□ -0.72
UPF3A-205ENST00000479712 PTGER2P43116 358 aa10.57□□□□□ -0.72
UPF3A-205ENST00000479712 DDX12PQ92771 950 aa10.57□□□□□ -0.72
UPF3A-205ENST00000479712 EVI5O60447 810 aa10.56□□□□□ -0.72
UPF3A-205ENST00000479712 GPBP1L1Q9HC44 474 aaPredicted RBP10.56□□□□□ -0.72
UPF3A-205ENST00000479712 ZNF316A6NFI3 1004 aaPredicted RBP10.55□□□□□ -0.72
UPF3A-205ENST00000479712 TRIM66O15016 1216 aa10.55□□□□□ -0.72
UPF3A-205ENST00000479712 PDE4DQ08499 809 aa10.53□□□□□ -0.72
UPF3A-205ENST00000479712 PTCD2Q8WV60 388 aaKnown RBP10.52□□□□□ -0.73
UPF3A-205ENST00000479712 MINK1Q8N4C8 1332 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-205ENST00000479712 FCHSD2O94868 740 aa10.51□□□□□ -0.73
UPF3A-205ENST00000479712 MAP2K5Q13163 448 aa10.51□□□□□ -0.73
UPF3A-205ENST00000479712 KDM4CQ9H3R0 1056 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms