RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZMYM4Q5VZL5 1548 aa11.46□□□□□ -0.57
HDAC3-207ENST00000475549 ARHGEF40Q8TER5 1519 aa11.46□□□□□ -0.57
HDAC3-207ENST00000475549 MAGI2Q86UL8 1455 aa11.46□□□□□ -0.57
HDAC3-207ENST00000475549 MLECQ14165 292 aa11.46□□□□□ -0.57
HDAC3-207ENST00000475549 SIGLEC1Q9BZZ2 1709 aa11.45□□□□□ -0.58
HDAC3-207ENST00000475549 ZFYVE16Q7Z3T8 1539 aa11.45□□□□□ -0.58
HDAC3-207ENST00000475549 BCORL1Q5H9F3 1711 aa11.44□□□□□ -0.58
HDAC3-207ENST00000475549 ATP10AO60312 1499 aa11.44□□□□□ -0.58
HDAC3-207ENST00000475549 CLIP1P30622 1438 aa11.43□□□□□ -0.58
HDAC3-207ENST00000475549 MADDQ8WXG6 1647 aa11.43□□□□□ -0.58
HDAC3-207ENST00000475549 PLPPR3Q6T4P5 718 aa11.43□□□□□ -0.58
HDAC3-207ENST00000475549 ARHGEF12Q9NZN5 1544 aa11.43□□□□□ -0.58
HDAC3-207ENST00000475549 LRRIQ1Q96JM4 1722 aa11.43□□□□□ -0.58
HDAC3-207ENST00000475549 CFAP74Q9C0B2 1584 aa11.42□□□□□ -0.58
HDAC3-207ENST00000475549 TRAPPC8Q9Y2L5 1435 aa11.42□□□□□ -0.58
HDAC3-207ENST00000475549 PCF11O94913 1555 aaKnown RBP11.41□□□□□ -0.58
HDAC3-207ENST00000475549 ARHGAP5Q13017 1502 aa11.41□□□□□ -0.58
HDAC3-207ENST00000475549 LMTK3Q96Q04 1460 aa11.41□□□□□ -0.58
HDAC3-207ENST00000475549 HSPA2P54652 639 aa11.41□□□□□ -0.58
HDAC3-207ENST00000475549 CCDC18Q5T9S5 1454 aa11.4□□□□□ -0.58
HDAC3-207ENST00000475549 CEBPAP49715 358 aaPredicted RBP11.4□□□□□ -0.58
HDAC3-207ENST00000475549 ZNF518AQ6AHZ1 1483 aa11.39□□□□□ -0.59
HDAC3-207ENST00000475549 C9orf84Q5VXU9 1444 aa11.39□□□□□ -0.59
HDAC3-207ENST00000475549 FYCO1Q9BQS8 1478 aa11.38□□□□□ -0.59
HDAC3-207ENST00000475549 ZNF777Q9ULD5 760 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-207ENST00000475549 MLH3Q9UHC1 1453 aa11.38□□□□□ -0.59
HDAC3-207ENST00000475549 KDM5CP41229 1560 aa11.37□□□□□ -0.59
HDAC3-207ENST00000475549 GPATCH8Q9UKJ3 1502 aaKnown RBP11.37□□□□□ -0.59
HDAC3-207ENST00000475549 HNRNPMP52272 730 aaKnown RBP eCLIP11.37□□□□□ -0.59
HDAC3-207ENST00000475549 MYO5CQ9NQX4 1742 aa11.36□□□□□ -0.59
HDAC3-207ENST00000475549 MYT1LQ9UL68 1186 aa11.36□□□□□ -0.59
HDAC3-207ENST00000475549 LOC105371045A0A1W2PR82 267 aa11.35□□□□□ -0.59
HDAC3-207ENST00000475549 RIMS1Q86UR5 1692 aaKnown RBP11.35□□□□□ -0.59
HDAC3-207ENST00000475549 CDC42BPBQ9Y5S2 1711 aa11.35□□□□□ -0.59
HDAC3-207ENST00000475549 ABCC1P33527 1531 aa11.35□□□□□ -0.59
HDAC3-207ENST00000475549 ZNF644Q9H582 1327 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-207ENST00000475549 CFDP1Q9UEE9 299 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-207ENST00000475549 DIP2CQ9Y2E4 1556 aa11.33□□□□□ -0.6
HDAC3-207ENST00000475549 PREX2Q70Z35 1606 aa11.32□□□□□ -0.6
HDAC3-207ENST00000475549 CEP162Q5TB80 1403 aa11.31□□□□□ -0.6
HDAC3-207ENST00000475549 KIAA1107Q9UPP5 1409 aa11.31□□□□□ -0.6
HDAC3-207ENST00000475549 MTUS2Q5JR59 1369 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 CCNB3Q8WWL7 1395 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 SAMD9LQ8IVG5 1584 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 FBXO41Q8TF61 875 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 ABCA6Q8N139 1617 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 SPAG9O60271 1321 aaKnown RBP11.3□□□□□ -0.6
HDAC3-207ENST00000475549 AGLP35573 1532 aa11.3□□□□□ -0.6
HDAC3-207ENST00000475549 REREQ9P2R6 1566 aa11.29□□□□□ -0.6
HDAC3-207ENST00000475549 CDC42BPAQ5VT25 1732 aa11.28□□□□□ -0.6
HDAC3-207ENST00000475549 SYCP2Q9BX26 1530 aa11.28□□□□□ -0.6
HDAC3-207ENST00000475549 MBD5Q9P267 1494 aa11.27□□□□□ -0.6
HDAC3-207ENST00000475549 KIDINS220Q9ULH0 1771 aa11.27□□□□□ -0.61
HDAC3-207ENST00000475549 ITSN2Q9NZM3 1697 aa11.26□□□□□ -0.61
HDAC3-207ENST00000475549 FER1L4A9Z1Z3 1794 aa11.26□□□□□ -0.61
HDAC3-207ENST00000475549 ZMYM3Q14202 1370 aa11.25□□□□□ -0.61
HDAC3-207ENST00000475549 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
HDAC3-207ENST00000475549 PLEKHH2Q8IVE3 1493 aa11.24□□□□□ -0.61
HDAC3-207ENST00000475549 KANK4Q5T7N3 995 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-207ENST00000475549 CERKQ8TCT0 537 aa11.23□□□□□ -0.61
HDAC3-207ENST00000475549 A2MP01023 1474 aa11.22□□□□□ -0.61
HDAC3-207ENST00000475549 TIAM1Q13009 1591 aa11.22□□□□□ -0.61
HDAC3-207ENST00000475549 UHRF1BP1Q6BDS2 1440 aa11.22□□□□□ -0.61
HDAC3-207ENST00000475549 GGT6Q6P531 493 aa11.22□□□□□ -0.61
HDAC3-207ENST00000475549 ATP7AQ04656 1500 aa11.21□□□□□ -0.61
HDAC3-207ENST00000475549 NCOA2Q15596 1464 aa11.21□□□□□ -0.61
HDAC3-207ENST00000475549 CNTLNQ9NXG0 1405 aa11.21□□□□□ -0.61
HDAC3-207ENST00000475549 EHBP1L1Q8N3D4 1523 aa11.2□□□□□ -0.62
HDAC3-207ENST00000475549 PLXNC1O60486 1568 aa11.2□□□□□ -0.62
HDAC3-207ENST00000475549 INO80Q9ULG1 1556 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-207ENST00000475549 DHX29Q7Z478 1369 aaKnown RBP11.19□□□□□ -0.62
HDAC3-207ENST00000475549 DMRT2Q9Y5R5 561 aa11.19□□□□□ -0.62
HDAC3-207ENST00000475549 RTEL1-TNFRSF6BF6WH68 1400 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 VPS8Q8N3P4 1428 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 C3P01024 1663 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 FOXD1Q16676 465 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 PPP6R1Q9UPN7 881 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 NPATQ14207 1427 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 PTPRKQ15262 1439 aa11.18□□□□□ -0.62
HDAC3-207ENST00000475549 PREX1Q8TCU6 1659 aa11.17□□□□□ -0.62
HDAC3-207ENST00000475549 RSPH4AQ5TD94 716 aa11.17□□□□□ -0.62
HDAC3-207ENST00000475549 LRRC9Q6ZRR7 1453 aa11.17□□□□□ -0.62
HDAC3-207ENST00000475549 STRCQ7RTU9 1775 aa11.16□□□□□ -0.62
HDAC3-207ENST00000475549 KIF3BO15066 747 aa11.16□□□□□ -0.62
HDAC3-207ENST00000475549 FBXO31Q5XUX0 539 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-207ENST00000475549 NCKAP5LQ9HCH0 1330 aa11.15□□□□□ -0.62
HDAC3-207ENST00000475549 CAMSAP2Q08AD1 1489 aa11.15□□□□□ -0.62
HDAC3-207ENST00000475549 PTPRTO14522 1441 aa11.15□□□□□ -0.62
HDAC3-207ENST00000475549 NCOA1Q15788 1441 aa11.15□□□□□ -0.62
HDAC3-207ENST00000475549 CCDC141Q6ZP82 1450 aa11.14□□□□□ -0.63
HDAC3-207ENST00000475549 SUPT6HQ7KZ85 1726 aaKnown RBP11.14□□□□□ -0.63
HDAC3-207ENST00000475549 TSPY4P0CV99 314 aa11.13□□□□□ -0.63
HDAC3-207ENST00000475549 TSPY10P0CW01 314 aa11.13□□□□□ -0.63
HDAC3-207ENST00000475549 SETD1BQ9UPS6 1966 aaKnown RBP11.12□□□□□ -0.63
HDAC3-207ENST00000475549 MAP3K1Q13233 1512 aa11.11□□□□□ -0.63
HDAC3-207ENST00000475549 WASHC2CQ9Y4E1 1318 aa11.1□□□□□ -0.63
HDAC3-207ENST00000475549 CAMSAP1Q5T5Y3 1602 aa11.1□□□□□ -0.63
HDAC3-207ENST00000475549 MROH2AA6NES4 1674 aa11.09□□□□□ -0.63
HDAC3-207ENST00000475549 CLTCQ00610 1675 aaKnown RBP11.09□□□□□ -0.63
HDAC3-207ENST00000475549 LTBP4Q8N2S1 1624 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms