RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 POGZQ7Z3K3 1410 aa22.94■■□□□ 1.26
UPF3A-204ENST00000475218 YEATS2Q9ULM3 1422 aa22.94■■□□□ 1.26
UPF3A-204ENST00000475218 CDC42BPBQ9Y5S2 1711 aa22.93■■□□□ 1.26
UPF3A-204ENST00000475218 BCORL1Q5H9F3 1711 aa22.93■■□□□ 1.26
UPF3A-204ENST00000475218 EFCAB2Q5VUJ9 269 aa22.91■■□□□ 1.26
UPF3A-204ENST00000475218 ARHGAP5Q13017 1502 aa22.9■■□□□ 1.26
UPF3A-204ENST00000475218 ZFYVE16Q7Z3T8 1539 aa22.9■■□□□ 1.26
UPF3A-204ENST00000475218 PREX2Q70Z35 1606 aa22.89■■□□□ 1.25
UPF3A-204ENST00000475218 MAGI2Q86UL8 1455 aa22.88■■□□□ 1.25
UPF3A-204ENST00000475218 HECW2Q9P2P5 1572 aa22.86■■□□□ 1.25
UPF3A-204ENST00000475218 CEP162Q5TB80 1403 aa22.86■■□□□ 1.25
UPF3A-204ENST00000475218 MADDQ8WXG6 1647 aa22.86■■□□□ 1.25
UPF3A-204ENST00000475218 CDC42BPAQ5VT25 1732 aa22.86■■□□□ 1.25
UPF3A-204ENST00000475218 PTPRMP28827 1452 aa22.85■■□□□ 1.25
UPF3A-204ENST00000475218 KDM5CP41229 1560 aa22.84■■□□□ 1.25
UPF3A-204ENST00000475218 ARHGEF12Q9NZN5 1544 aa22.83■■□□□ 1.25
UPF3A-204ENST00000475218 ARID4BQ4LE39 1312 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-204ENST00000475218 ABCC1P33527 1531 aa22.81■■□□□ 1.24
UPF3A-204ENST00000475218 ZNF518AQ6AHZ1 1483 aa22.81■■□□□ 1.24
UPF3A-204ENST00000475218 AFAP1Q8N556 730 aa22.8■■□□□ 1.24
UPF3A-204ENST00000475218 GPATCH8Q9UKJ3 1502 aaKnown RBP22.78■■□□□ 1.24
UPF3A-204ENST00000475218 TRAPPC8Q9Y2L5 1435 aa22.78■■□□□ 1.24
UPF3A-204ENST00000475218 ITSN2Q9NZM3 1697 aa22.77■■□□□ 1.24
UPF3A-204ENST00000475218 LOC105371045A0A1W2PR82 267 aa22.77■■□□□ 1.24
UPF3A-204ENST00000475218 ATP10AO60312 1499 aa22.77■■□□□ 1.24
UPF3A-204ENST00000475218 RIMS1Q86UR5 1692 aaKnown RBP22.76■■□□□ 1.23
UPF3A-204ENST00000475218 SAMD9LQ8IVG5 1584 aa22.75■■□□□ 1.23
UPF3A-204ENST00000475218 C9orf84Q5VXU9 1444 aa22.74■■□□□ 1.23
UPF3A-204ENST00000475218 DIP2CQ9Y2E4 1556 aa22.74■■□□□ 1.23
UPF3A-204ENST00000475218 ABCA6Q8N139 1617 aa22.72■■□□□ 1.23
UPF3A-204ENST00000475218 MLH3Q9UHC1 1453 aa22.72■■□□□ 1.23
UPF3A-204ENST00000475218 MTUS2Q5JR59 1369 aa22.69■■□□□ 1.22
UPF3A-204ENST00000475218 KIDINS220Q9ULH0 1771 aa22.69■■□□□ 1.22
UPF3A-204ENST00000475218 REREQ9P2R6 1566 aa22.68■■□□□ 1.22
UPF3A-204ENST00000475218 EHBP1L1Q8N3D4 1523 aa22.68■■□□□ 1.22
UPF3A-204ENST00000475218 SYCP2Q9BX26 1530 aa22.68■■□□□ 1.22
UPF3A-204ENST00000475218 TIAM1Q13009 1591 aa22.67■■□□□ 1.22
UPF3A-204ENST00000475218 FER1L4A9Z1Z3 1794 aa22.67■■□□□ 1.22
UPF3A-204ENST00000475218 MLECQ14165 292 aa22.66■■□□□ 1.22
UPF3A-204ENST00000475218 ZNF777Q9ULD5 760 aaPredicted RBP22.64■■□□□ 1.22
UPF3A-204ENST00000475218 CCNB3Q8WWL7 1395 aa22.64■■□□□ 1.21
UPF3A-204ENST00000475218 LMTK3Q96Q04 1460 aa22.63■■□□□ 1.21
UPF3A-204ENST00000475218 KIAA1107Q9UPP5 1409 aa22.62■■□□□ 1.21
UPF3A-204ENST00000475218 HNRNPMP52272 730 aaKnown RBP eCLIP22.61■■□□□ 1.213e-6■■■■□ 21.2
UPF3A-204ENST00000475218 CFDP1Q9UEE9 299 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-204ENST00000475218 VPS8Q8N3P4 1428 aa22.6■■□□□ 1.21
UPF3A-204ENST00000475218 AGLP35573 1532 aa22.59■■□□□ 1.21
UPF3A-204ENST00000475218 ZNF644Q9H582 1327 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-204ENST00000475218 MYT1LQ9UL68 1186 aa22.58■■□□□ 1.2
UPF3A-204ENST00000475218 INO80Q9ULG1 1556 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-204ENST00000475218 PLEKHH2Q8IVE3 1493 aa22.57■■□□□ 1.2
UPF3A-204ENST00000475218 NCOA2Q15596 1464 aa22.56■■□□□ 1.2
UPF3A-204ENST00000475218 MBD5Q9P267 1494 aa22.55■■□□□ 1.2
UPF3A-204ENST00000475218 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
UPF3A-204ENST00000475218 ATP7AQ04656 1500 aa22.54■■□□□ 1.2
UPF3A-204ENST00000475218 SUPT6HQ7KZ85 1726 aaKnown RBP22.54■■□□□ 1.2
UPF3A-204ENST00000475218 SPAG9O60271 1321 aaKnown RBP22.53■■□□□ 1.2
UPF3A-204ENST00000475218 CEBPAP49715 358 aaPredicted RBP22.51■■□□□ 1.19
UPF3A-204ENST00000475218 LRRC9Q6ZRR7 1453 aa22.51■■□□□ 1.19
UPF3A-204ENST00000475218 PLXNC1O60486 1568 aa22.5■■□□□ 1.19
UPF3A-204ENST00000475218 MAP3K1Q13233 1512 aa22.47■■□□□ 1.19
UPF3A-204ENST00000475218 HSPA2P54652 639 aa22.47■■□□□ 1.19
UPF3A-204ENST00000475218 KANK4Q5T7N3 995 aaPredicted RBP22.47■■□□□ 1.19
UPF3A-204ENST00000475218 C3P01024 1663 aa22.47■■□□□ 1.19
UPF3A-204ENST00000475218 CAMSAP2Q08AD1 1489 aa22.45■■□□□ 1.18
UPF3A-204ENST00000475218 A2MP01023 1474 aa22.45■■□□□ 1.18
UPF3A-204ENST00000475218 PREX1Q8TCU6 1659 aa22.43■■□□□ 1.18
UPF3A-204ENST00000475218 ADGBQ8N7X0 1667 aa22.41■■□□□ 1.18
UPF3A-204ENST00000475218 RTEL1-TNFRSF6BF6WH68 1400 aa22.4■■□□□ 1.18
UPF3A-204ENST00000475218 CCDC141Q6ZP82 1450 aa22.39■■□□□ 1.17
UPF3A-204ENST00000475218 ILDR1Q86SU0 546 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-204ENST00000475218 MROH2AA6NES4 1674 aa22.37■■□□□ 1.17
UPF3A-204ENST00000475218 CNTLNQ9NXG0 1405 aa22.37■■□□□ 1.17
UPF3A-204ENST00000475218 ARHGEF5Q12774 1597 aa22.36■■□□□ 1.17
UPF3A-204ENST00000475218 SETD1BQ9UPS6 1966 aaKnown RBP22.36■■□□□ 1.17
UPF3A-204ENST00000475218 CLTCQ00610 1675 aaKnown RBP22.34■■□□□ 1.17
UPF3A-204ENST00000475218 DHX29Q7Z478 1369 aaKnown RBP22.32■■□□□ 1.16
UPF3A-204ENST00000475218 MYOM3Q5VTT5 1437 aa22.31■■□□□ 1.16
UPF3A-204ENST00000475218 UHRF1BP1Q6BDS2 1440 aa22.31■■□□□ 1.16
UPF3A-204ENST00000475218 STRCQ7RTU9 1775 aa22.31■■□□□ 1.16
UPF3A-204ENST00000475218 ZMYM3Q14202 1370 aa22.31■■□□□ 1.16
UPF3A-204ENST00000475218 ESF1Q9H501 851 aaKnown RBP22.3■■□□□ 1.16
UPF3A-204ENST00000475218 RSPH4AQ5TD94 716 aa22.29■■□□□ 1.16
UPF3A-204ENST00000475218 MIA2Q96PC5 1412 aa22.29■■□□□ 1.16
UPF3A-204ENST00000475218 GGT6Q6P531 493 aa22.28■■□□□ 1.16
UPF3A-204ENST00000475218 MAST1Q9Y2H9 1570 aa22.27■■□□□ 1.16
UPF3A-204ENST00000475218 NPATQ14207 1427 aa22.27■■□□□ 1.16
UPF3A-204ENST00000475218 PTPRKQ15262 1439 aa22.24■■□□□ 1.15
UPF3A-204ENST00000475218 PPP6R1Q9UPN7 881 aa22.22■■□□□ 1.15
UPF3A-204ENST00000475218 KIF3BO15066 747 aa22.21■■□□□ 1.15
UPF3A-204ENST00000475218 TSPY4P0CV99 314 aa22.2■■□□□ 1.14
UPF3A-204ENST00000475218 TSPY10P0CW01 314 aa22.2■■□□□ 1.14
UPF3A-204ENST00000475218 MYO3AQ8NEV4 1616 aa22.19■■□□□ 1.14
UPF3A-204ENST00000475218 PTPN23Q9H3S7 1636 aa22.19■■□□□ 1.14
UPF3A-204ENST00000475218 ZNF142P52746 1687 aaPredicted RBP22.17■■□□□ 1.14
UPF3A-204ENST00000475218 KDM5DQ9BY66 1539 aa22.17■■□□□ 1.14
UPF3A-204ENST00000475218 CROCC2H7BZ55 1655 aa22.16■■□□□ 1.14
UPF3A-204ENST00000475218 RNF17Q9BXT8 1623 aaKnown RBP22.16■■□□□ 1.14
UPF3A-204ENST00000475218 ABCC5O15440 1437 aa22.16■■□□□ 1.14
UPF3A-204ENST00000475218 NCOA1Q15788 1441 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms