RNA–Protein interactions for RNA: ENST00000474413.5

EFNA1-204, Transcript of ephrin A1, human

TSL 3

Gene EFNA1, Length 1,083 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EFNA1-204	ENST00000474413	KDM4F	A0A1W2PPD8	638 aa		28.89	■■■□□ 2.22
EFNA1-204	ENST00000474413	ARHGAP5	Q13017	1502 aa		28.89	■■■□□ 2.21
EFNA1-204	ENST00000474413	ARHGEF40	Q8TER5	1519 aa		28.88	■■■□□ 2.21
EFNA1-204	ENST00000474413	POGZ	Q7Z3K3	1410 aa		28.86	■■■□□ 2.21
EFNA1-204	ENST00000474413	EHBP1L1	Q8N3D4	1523 aa		28.85	■■■□□ 2.21
EFNA1-204	ENST00000474413	TIAM1	Q13009	1591 aa		28.84	■■■□□ 2.21
EFNA1-204	ENST00000474413	SCAPER	Q9BY12	1400 aa		28.83	■■■□□ 2.21
EFNA1-204	ENST00000474413	ABCC1	P33527	1531 aa		28.82	■■■□□ 2.2
EFNA1-204	ENST00000474413	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.8	■■■□□ 2.2
EFNA1-204	ENST00000474413	SIGLEC1	Q9BZZ2	1709 aa		28.8	■■■□□ 2.2
EFNA1-204	ENST00000474413	ARHGEF12	Q9NZN5	1544 aa		28.79	■■■□□ 2.2
EFNA1-204	ENST00000474413	MTUS2	Q5JR59	1369 aa		28.78	■■■□□ 2.2
EFNA1-204	ENST00000474413	EFCAB2	Q5VUJ9	269 aa		28.78	■■■□□ 2.2
EFNA1-204	ENST00000474413	KDM5C	P41229	1560 aa		28.78	■■■□□ 2.2
EFNA1-204	ENST00000474413	SAMD9L	Q8IVG5	1584 aa		28.78	■■■□□ 2.2
EFNA1-204	ENST00000474413	ITSN2	Q9NZM3	1697 aa		28.77	■■■□□ 2.2
EFNA1-204	ENST00000474413	YEATS2	Q9ULM3	1422 aa		28.77	■■■□□ 2.2
EFNA1-204	ENST00000474413	ZFYVE16	Q7Z3T8	1539 aa		28.74	■■■□□ 2.19
EFNA1-204	ENST00000474413	ZNF518A	Q6AHZ1	1483 aa		28.71	■■■□□ 2.19
EFNA1-204	ENST00000474413	MAGI2	Q86UL8	1455 aa		28.7	■■■□□ 2.18
EFNA1-204	ENST00000474413	MAP3K1	Q13233	1512 aa		28.69	■■■□□ 2.18
EFNA1-204	ENST00000474413	TRAPPC8	Q9Y2L5	1435 aa		28.69	■■■□□ 2.18
EFNA1-204	ENST00000474413	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.68	■■■□□ 2.18
EFNA1-204	ENST00000474413	LRRC9	Q6ZRR7	1453 aa		28.67	■■■□□ 2.18
EFNA1-204	ENST00000474413	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.67	■■■□□ 2.18
EFNA1-204	ENST00000474413	SYCP2	Q9BX26	1530 aa		28.67	■■■□□ 2.18
EFNA1-204	ENST00000474413	HECW2	Q9P2P5	1572 aa		28.67	■■■□□ 2.18
EFNA1-204	ENST00000474413	NCOA2	Q15596	1464 aa		28.66	■■■□□ 2.18
EFNA1-204	ENST00000474413	CCNB3	Q8WWL7	1395 aa		28.65	■■■□□ 2.18
EFNA1-204	ENST00000474413	ADAMTSL3	P82987	1691 aa		28.65	■■■□□ 2.18
EFNA1-204	ENST00000474413	BCORL1	Q5H9F3	1711 aa		28.65	■■■□□ 2.18
EFNA1-204	ENST00000474413	ABCA6	Q8N139	1617 aa		28.63	■■■□□ 2.17
EFNA1-204	ENST00000474413	DIP2C	Q9Y2E4	1556 aa		28.62	■■■□□ 2.17
EFNA1-204	ENST00000474413	AFAP1	Q8N556	730 aa		28.62	■■■□□ 2.17
EFNA1-204	ENST00000474413	MLH3	Q9UHC1	1453 aa		28.59	■■■□□ 2.17
EFNA1-204	ENST00000474413	KIDINS220	Q9ULH0	1771 aa		28.58	■■■□□ 2.17
EFNA1-204	ENST00000474413	KANK4	Q5T7N3	995 aa	Predicted RBP	28.57	■■■□□ 2.16
EFNA1-204	ENST00000474413	MADD	Q8WXG6	1647 aa		28.56	■■■□□ 2.16
EFNA1-204	ENST00000474413	KIAA1107	Q9UPP5	1409 aa		28.55	■■■□□ 2.16
EFNA1-204	ENST00000474413	ATP10A	O60312	1499 aa		28.54	■■■□□ 2.16
EFNA1-204	ENST00000474413	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.54	■■■□□ 2.16
EFNA1-204	ENST00000474413	INO80	Q9ULG1	1556 aa	Predicted RBP	28.54	■■■□□ 2.16
EFNA1-204	ENST00000474413	C9orf84	Q5VXU9	1444 aa		28.53	■■■□□ 2.16
EFNA1-204	ENST00000474413	ZNF644	Q9H582	1327 aa	Predicted RBP	28.53	■■■□□ 2.16
EFNA1-204	ENST00000474413	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.53	■■■□□ 2.16
EFNA1-204	ENST00000474413	RERE	Q9P2R6	1566 aa		28.53	■■■□□ 2.16
EFNA1-204	ENST00000474413	PLEKHH2	Q8IVE3	1493 aa		28.53	■■■□□ 2.16
EFNA1-204	ENST00000474413	MBD5	Q9P267	1494 aa		28.52	■■■□□ 2.16
EFNA1-204	ENST00000474413	CAMSAP2	Q08AD1	1489 aa		28.48	■■■□□ 2.15
EFNA1-204	ENST00000474413	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.47	■■■□□ 2.15
EFNA1-204	ENST00000474413	ATP7A	Q04656	1500 aa		28.45	■■■□□ 2.15
EFNA1-204	ENST00000474413	RIMS1	Q86UR5	1692 aa	Known RBP	28.45	■■■□□ 2.14
EFNA1-204	ENST00000474413	PTPRM	P28827	1452 aa		28.44	■■■□□ 2.14
EFNA1-204	ENST00000474413	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.43	■■■□□ 2.14
EFNA1-204	ENST00000474413	PLXNC1	O60486	1568 aa		28.4	■■■□□ 2.14
EFNA1-204	ENST00000474413	FER1L4	A9Z1Z3	1794 aa		28.39	■■■□□ 2.14
EFNA1-204	ENST00000474413	AGL	P35573	1532 aa		28.39	■■■□□ 2.14
EFNA1-204	ENST00000474413	MYOM3	Q5VTT5	1437 aa		28.39	■■■□□ 2.14
EFNA1-204	ENST00000474413	ARHGEF5	Q12774	1597 aa		28.37	■■■□□ 2.13
EFNA1-204	ENST00000474413	SPAG9	O60271	1321 aa	Known RBP	28.36	■■■□□ 2.13
EFNA1-204	ENST00000474413	CCDC141	Q6ZP82	1450 aa		28.35	■■■□□ 2.13
EFNA1-204	ENST00000474413	ADGB	Q8N7X0	1667 aa		28.33	■■■□□ 2.13
EFNA1-204	ENST00000474413	MIA2	Q96PC5	1412 aa		28.32	■■■□□ 2.12
EFNA1-204	ENST00000474413	MLEC	Q14165	292 aa		28.29	■■■□□ 2.12
EFNA1-204	ENST00000474413	MYT1L	Q9UL68	1186 aa		28.29	■■■□□ 2.12
EFNA1-204	ENST00000474413	RTEL1-TNFRSF6B	F6WH68	1400 aa		28.27	■■■□□ 2.12
EFNA1-204	ENST00000474413	A2M	P01023	1474 aa		28.27	■■■□□ 2.12
EFNA1-204	ENST00000474413	PTPN23	Q9H3S7	1636 aa		28.25	■■■□□ 2.11
EFNA1-204	ENST00000474413	MAST1	Q9Y2H9	1570 aa		28.24	■■■□□ 2.11
EFNA1-204	ENST00000474413	FGD6	Q6ZV73	1430 aa		28.23	■■■□□ 2.11
EFNA1-204	ENST00000474413	TCOF1	Q13428	1488 aa	Known RBP	28.22	■■■□□ 2.11
EFNA1-204	ENST00000474413	APLP2	Q06481	763 aa		28.22	■■■□□ 2.11
EFNA1-204	ENST00000474413	CROCC2	H7BZ55	1655 aa		28.22	■■■□□ 2.11
EFNA1-204	ENST00000474413	C3	P01024	1663 aa		28.16	■■■□□ 2.1
EFNA1-204	ENST00000474413	LMTK3	Q96Q04	1460 aa		28.15	■■■□□ 2.1
EFNA1-204	ENST00000474413	DNMT1	P26358	1616 aa	Known RBP	28.14	■■■□□ 2.1
EFNA1-204	ENST00000474413	ABCC5	O15440	1437 aa		28.12	■■■□□ 2.09
EFNA1-204	ENST00000474413	RSPH4A	Q5TD94	716 aa		28.12	■■■□□ 2.09
EFNA1-204	ENST00000474413	DHX29	Q7Z478	1369 aa	Known RBP	28.11	■■■□□ 2.09
EFNA1-204	ENST00000474413	MROH2A	A6NES4	1674 aa		28.11	■■■□□ 2.09
EFNA1-204	ENST00000474413	SHANK2	Q9UPX8	1470 aa		28.11	■■■□□ 2.09
EFNA1-204	ENST00000474413	CLTC	Q00610	1675 aa	Known RBP	28.09	■■■□□ 2.09
EFNA1-204	ENST00000474413	DAPK1	P53355	1430 aa		28.08	■■■□□ 2.09
EFNA1-204	ENST00000474413	CEBPA	P49715	358 aa	Predicted RBP	28.06	■■■□□ 2.08
EFNA1-204	ENST00000474413	CNTLN	Q9NXG0	1405 aa		28.04	■■■□□ 2.08
EFNA1-204	ENST00000474413	PLPPR3	Q6T4P5	718 aa		28.04	■■■□□ 2.08
EFNA1-204	ENST00000474413	PREX1	Q8TCU6	1659 aa		28.03	■■■□□ 2.08
EFNA1-204	ENST00000474413	RNF17	Q9BXT8	1623 aa	Known RBP	28.03	■■■□□ 2.08
EFNA1-204	ENST00000474413	MROH1	Q8NDA8	1641 aa		28.02	■■■□□ 2.08
EFNA1-204	ENST00000474413	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.01	■■■□□ 2.07
EFNA1-204	ENST00000474413	TSPY4	P0CV99	314 aa		28	■■■□□ 2.07
EFNA1-204	ENST00000474413	TSPY10	P0CW01	314 aa		28	■■■□□ 2.07
EFNA1-204	ENST00000474413	DUOX2	Q9NRD8	1548 aa		27.97	■■■□□ 2.07
EFNA1-204	ENST00000474413	GGT6	Q6P531	493 aa		27.95	■■■□□ 2.06
EFNA1-204	ENST00000474413	KDM5D	Q9BY66	1539 aa		27.95	■■■□□ 2.06
EFNA1-204	ENST00000474413	FAM135A	Q9P2D6	1515 aa		27.95	■■■□□ 2.06
EFNA1-204	ENST00000474413	PPARGC1B	Q86YN6	1023 aa	Known RBP	27.94	■■■□□ 2.06
EFNA1-204	ENST00000474413	KIF3B	O15066	747 aa		27.93	■■■□□ 2.06
EFNA1-204	ENST00000474413	ZMYM3	Q14202	1370 aa		27.93	■■■□□ 2.06
EFNA1-204	ENST00000474413	KIF15	Q9NS87	1388 aa		27.93	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms