RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 PODXL2Q9NZ53 605 aa5.81□□□□□ -1.48
VPS50-210ENST00000471188 MAP3K13O43283 966 aa5.8□□□□□ -1.48
VPS50-210ENST00000471188 GLIPR1L2Q4G1C9 344 aa5.8□□□□□ -1.48
VPS50-210ENST00000471188 MAMSTRQ6ZN01 415 aa5.8□□□□□ -1.48
VPS50-210ENST00000471188 HIRIP3Q9BW71 556 aaPredicted RBP5.8□□□□□ -1.48
VPS50-210ENST00000471188 NEFMP07197 916 aa5.8□□□□□ -1.48
VPS50-210ENST00000471188 IFNLR1Q8IU57 520 aaPredicted RBP5.8□□□□□ -1.48
VPS50-210ENST00000471188 PPP4R2Q9NY27 417 aa5.8□□□□□ -1.48
VPS50-210ENST00000471188 LAS1LQ9Y4W2 734 aaKnown RBP5.8□□□□□ -1.48
VPS50-210ENST00000471188 NPM2Q86SE8 214 aaKnown RBP5.8□□□□□ -1.48
VPS50-210ENST00000471188 RSF1Q96T23 1441 aaPredicted RBP5.8□□□□□ -1.48
VPS50-210ENST00000471188 CCDC61Q9Y6R9 512 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 NUBP1P53384 320 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 BRPF3Q9ULD4 1205 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 WDR97A6NE52 1622 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 VSIG10Q8N0Z9 540 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 IPO9Q96P70 1041 aaKnown RBP5.79□□□□□ -1.48
VPS50-210ENST00000471188 PCDHB13Q9Y5F0 798 aa5.79□□□□□ -1.48
VPS50-210ENST00000471188 TRPC6Q9Y210 931 aa5.78□□□□□ -1.48
VPS50-210ENST00000471188 SLC24A1O60721 1099 aa5.77□□□□□ -1.49
VPS50-210ENST00000471188 DNAJC5Q9H3Z4 198 aa5.77□□□□□ -1.49
VPS50-210ENST00000471188 DHX57Q6P158 1386 aaKnown RBP5.77□□□□□ -1.49
VPS50-210ENST00000471188 KIF12Q96FN5 646 aa5.76□□□□□ -1.49
VPS50-210ENST00000471188 TNIKQ9UKE5 1360 aa5.75□□□□□ -1.49
VPS50-210ENST00000471188 CCER2I3L3R5 266 aa5.75□□□□□ -1.49
VPS50-210ENST00000471188 ZMYND15Q9H091 742 aa5.75□□□□□ -1.49
VPS50-210ENST00000471188 RSPH6AQ9H0K4 717 aa5.74□□□□□ -1.49
VPS50-210ENST00000471188 PCDHB8Q9UN66 801 aa5.74□□□□□ -1.49
VPS50-210ENST00000471188 SPOCK2Q92563 424 aa5.74□□□□□ -1.49
VPS50-210ENST00000471188 SLC39A7Q92504 469 aa5.73□□□□□ -1.49
VPS50-210ENST00000471188 C7P10643 843 aa5.73□□□□□ -1.49
VPS50-210ENST00000471188 IFNL1Q8IU54 200 aa5.72□□□□□ -1.49
VPS50-210ENST00000471188 SIN3AQ96ST3 1273 aa5.72□□□□□ -1.49
VPS50-210ENST00000471188 WASHC2AQ641Q2 1341 aa5.71□□□□□ -1.49
VPS50-210ENST00000471188 C11orf95C9JLR9 678 aaPredicted RBP5.71□□□□□ -1.5
VPS50-210ENST00000471188 PPP1R15AO75807 674 aaPredicted RBP5.71□□□□□ -1.5
VPS50-210ENST00000471188 GSE1Q14687 1217 aa5.71□□□□□ -1.5
VPS50-210ENST00000471188 USP35Q9P2H5 1018 aa5.71□□□□□ -1.5
VPS50-210ENST00000471188 A0A0U1RQG5 324 aaPredicted RBP5.7□□□□□ -1.5
VPS50-210ENST00000471188 PPM1GO15355 546 aaPredicted RBP5.7□□□□□ -1.5
VPS50-210ENST00000471188 OTUD5Q96G74 571 aa5.7□□□□□ -1.5
VPS50-210ENST00000471188 MROH2BQ7Z745 1585 aa5.7□□□□□ -1.5
VPS50-210ENST00000471188 ATN1P54259 1190 aaPredicted RBP5.7□□□□□ -1.5
VPS50-210ENST00000471188 SOGA1O94964 1423 aa5.7□□□□□ -1.5
VPS50-210ENST00000471188 FAM9BQ8IZU0 186 aa5.69□□□□□ -1.5
VPS50-210ENST00000471188 TMEM106CQ9BVX2 250 aa5.69□□□□□ -1.5
VPS50-210ENST00000471188 BMP2KQ9NSY1 1161 aaPredicted RBP5.69□□□□□ -1.5
VPS50-210ENST00000471188 WASHC2CQ9Y4E1 1318 aa5.69□□□□□ -1.5
VPS50-210ENST00000471188 POTEMA6NI47 508 aa5.68□□□□□ -1.5
VPS50-210ENST00000471188 DAXXQ9UER7 740 aaPredicted RBP5.68□□□□□ -1.5
VPS50-210ENST00000471188 BAZ1BQ9UIG0 1483 aaKnown RBP5.68□□□□□ -1.5
VPS50-210ENST00000471188 TRIM35Q9UPQ4 493 aa5.68□□□□□ -1.5
VPS50-210ENST00000471188 TOP2AP11388 1531 aaKnown RBP5.68□□□□□ -1.5
VPS50-210ENST00000471188 ABCC8Q09428 1581 aa5.68□□□□□ -1.5
VPS50-210ENST00000471188 FRAT1Q92837 279 aaPredicted RBP5.68□□□□□ -1.5
VPS50-210ENST00000471188 METRNQ9UJH8 293 aa5.68□□□□□ -1.5
VPS50-210ENST00000471188 TARBP1Q13395 1621 aaKnown RBP5.68□□□□□ -1.5
VPS50-210ENST00000471188 CCDC88BA6NC98 1476 aa5.67□□□□□ -1.5
VPS50-210ENST00000471188 MRC2Q9UBG0 1479 aa5.67□□□□□ -1.5
VPS50-210ENST00000471188 POTEGQ6S5H5 508 aa5.67□□□□□ -1.5
VPS50-210ENST00000471188 NAP1L5Q96NT1 182 aaPredicted RBP5.67□□□□□ -1.5
VPS50-210ENST00000471188 SCUBE2Q9NQ36 999 aa5.67□□□□□ -1.5
VPS50-210ENST00000471188 ATMINO43313 823 aaPredicted RBP5.67□□□□□ -1.5
VPS50-210ENST00000471188 HSP90AA2PQ14568 343 aaPredicted RBP5.67□□□□□ -1.5
VPS50-210ENST00000471188 CLIP1P30622 1438 aa5.67□□□□□ -1.5
VPS50-210ENST00000471188 TTLL13PA6NNM8 815 aa5.66□□□□□ -1.5
VPS50-210ENST00000471188 SEC24BO95487 1268 aa5.66□□□□□ -1.5
VPS50-210ENST00000471188 ASTLQ6HA08 431 aaPredicted RBP5.66□□□□□ -1.5
VPS50-210ENST00000471188 NESP48681 1621 aa5.66□□□□□ -1.5
VPS50-210ENST00000471188 WIZO95785 1651 aa5.66□□□□□ -1.5
VPS50-210ENST00000471188 GOLGA3Q08378 1498 aa5.66□□□□□ -1.5
VPS50-210ENST00000471188 CNGB1Q14028 1251 aaPredicted RBP5.66□□□□□ -1.5
VPS50-210ENST00000471188 CFTRP13569 1480 aa5.65□□□□□ -1.5
VPS50-210ENST00000471188 FAM43AQ8N2R8 423 aa5.65□□□□□ -1.5
VPS50-210ENST00000471188 EEA1Q15075 1411 aa5.65□□□□□ -1.5
VPS50-210ENST00000471188 SENP3-EIF4A1A0A087X0R7 540 aa5.65□□□□□ -1.51
VPS50-210ENST00000471188 ARXQ96QS3 562 aa5.65□□□□□ -1.51
VPS50-210ENST00000471188 VPS8Q8N3P4 1428 aa5.64□□□□□ -1.51
VPS50-210ENST00000471188 GOLGA2Q08379 1002 aa5.64□□□□□ -1.51
VPS50-210ENST00000471188 NFKBIBQ15653 356 aa5.64□□□□□ -1.51
VPS50-210ENST00000471188 RUSC2Q8N2Y8 1516 aa5.64□□□□□ -1.51
VPS50-210ENST00000471188 HSP90AA1P07900 732 aaKnown RBP5.64□□□□□ -1.51
VPS50-210ENST00000471188 ARID4BQ4LE39 1312 aaPredicted RBP5.63□□□□□ -1.51
VPS50-210ENST00000471188 SLC4A3P48751 1232 aa5.63□□□□□ -1.51
VPS50-210ENST00000471188 POTEB2H3BUK9 544 aa5.63□□□□□ -1.51
VPS50-210ENST00000471188 MRS2Q9HD23 443 aa5.63□□□□□ -1.51
VPS50-210ENST00000471188 CLASP1Q7Z460 1538 aa5.63□□□□□ -1.51
VPS50-210ENST00000471188 TIE1P35590 1138 aa5.63□□□□□ -1.51
VPS50-210ENST00000471188 RIMBP3CA6NJZ7 1639 aa5.62□□□□□ -1.51
VPS50-210ENST00000471188 RIMBP3BA6NNM3 1639 aa5.62□□□□□ -1.51
VPS50-210ENST00000471188 RIMBP3Q9UFD9 1639 aa5.62□□□□□ -1.51
VPS50-210ENST00000471188 PDE4AP27815 886 aa5.62□□□□□ -1.51
VPS50-210ENST00000471188 KANK4Q5T7N3 995 aaPredicted RBP5.62□□□□□ -1.51
VPS50-210ENST00000471188 ZNF467Q7Z7K2 595 aaPredicted RBP5.62□□□□□ -1.51
VPS50-210ENST00000471188 COLQQ9Y215 455 aaPredicted RBP5.61□□□□□ -1.51
VPS50-210ENST00000471188 CCDC184Q52MB2 194 aa5.61□□□□□ -1.51
VPS50-210ENST00000471188 PNNQ9H307 717 aaKnown RBP5.61□□□□□ -1.51
VPS50-210ENST00000471188 RAB3GAP2Q9H2M9 1393 aa5.61□□□□□ -1.51
VPS50-210ENST00000471188 PSEN1P49768 467 aa5.61□□□□□ -1.51
VPS50-210ENST00000471188 DCAF11Q8TEB1 546 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms