RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DCAF1Q9Y4B6 1507 aa7.57□□□□□ -1.2
TMEM39A-204ENST00000468545 NACADO15069 1562 aa7.56□□□□□ -1.2
TMEM39A-204ENST00000468545 SLAIN1Q8ND83 568 aa7.55□□□□□ -1.2
TMEM39A-204ENST00000468545 FAM163AQ96GL9 167 aaPredicted RBP7.55□□□□□ -1.2
TMEM39A-204ENST00000468545 RB1CC1Q8TDY2 1594 aa7.54□□□□□ -1.2
TMEM39A-204ENST00000468545 DPY19L2Q6NUT2 758 aa7.53□□□□□ -1.2
TMEM39A-204ENST00000468545 CADPS2Q86UW7 1296 aa7.53□□□□□ -1.2
TMEM39A-204ENST00000468545 POTEMA6NI47 508 aa7.51□□□□□ -1.21
TMEM39A-204ENST00000468545 MYO15BQ96JP2 1530 aa7.51□□□□□ -1.21
TMEM39A-204ENST00000468545 POTEGQ6S5H5 508 aa7.5□□□□□ -1.21
TMEM39A-204ENST00000468545 MICALL2Q8IY33 904 aa7.5□□□□□ -1.21
TMEM39A-204ENST00000468545 L3MBTL3Q96JM7 780 aaPredicted RBP7.5□□□□□ -1.21
TMEM39A-204ENST00000468545 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.5□□□□□ -1.21
TMEM39A-204ENST00000468545 BOLA1Q9Y3E2 137 aa7.5□□□□□ -1.21
TMEM39A-204ENST00000468545 G3V3G9 751 aa7.49□□□□□ -1.21
TMEM39A-204ENST00000468545 LCE2DQ5TA82 110 aaPredicted RBP7.49□□□□□ -1.21
TMEM39A-204ENST00000468545 TMEM121BQ9BXQ6 578 aaPredicted RBP7.49□□□□□ -1.21
TMEM39A-204ENST00000468545 C3orf67Q6ZVT6 689 aa7.48□□□□□ -1.21
TMEM39A-204ENST00000468545 NCKAP5LQ9HCH0 1330 aa7.47□□□□□ -1.21
TMEM39A-204ENST00000468545 SCRIBQ14160 1630 aa7.46□□□□□ -1.21
TMEM39A-204ENST00000468545 PDE4AP27815 886 aa7.46□□□□□ -1.22
TMEM39A-204ENST00000468545 CRISPLD2Q9H0B8 497 aa7.46□□□□□ -1.22
TMEM39A-204ENST00000468545 WDR70Q9NW82 654 aa7.46□□□□□ -1.22
TMEM39A-204ENST00000468545 MFSD10Q14728 455 aa7.43□□□□□ -1.22
TMEM39A-204ENST00000468545 LARP6Q9BRS8 491 aaKnown RBP7.43□□□□□ -1.22
TMEM39A-204ENST00000468545 P3H3Q8IVL6 736 aa7.42□□□□□ -1.22
TMEM39A-204ENST00000468545 DDX27Q96GQ7 796 aaKnown RBP7.42□□□□□ -1.22
TMEM39A-204ENST00000468545 GPHNQ9NQX3 736 aaPredicted RBP7.42□□□□□ -1.22
TMEM39A-204ENST00000468545 ST18O60284 1047 aa7.41□□□□□ -1.22
TMEM39A-204ENST00000468545 TMC2Q8TDI7 906 aa7.41□□□□□ -1.22
TMEM39A-204ENST00000468545 SNPHO15079 494 aa7.4□□□□□ -1.22
TMEM39A-204ENST00000468545 BCANQ96GW7 911 aa7.4□□□□□ -1.22
TMEM39A-204ENST00000468545 PLSCR2Q9NRY7 297 aa7.4□□□□□ -1.22
TMEM39A-204ENST00000468545 KIF3CO14782 793 aa7.38□□□□□ -1.23
TMEM39A-204ENST00000468545 E2F4Q16254 413 aa7.38□□□□□ -1.23
TMEM39A-204ENST00000468545 PPP1R15BQ5SWA1 713 aa7.38□□□□□ -1.23
TMEM39A-204ENST00000468545 KCNV2Q8TDN2 545 aa7.38□□□□□ -1.23
TMEM39A-204ENST00000468545 C2orf72A6NCS6 295 aa7.37□□□□□ -1.23
TMEM39A-204ENST00000468545 FOXK1P85037 733 aa7.37□□□□□ -1.23
TMEM39A-204ENST00000468545 DSG2Q14126 1118 aa7.36□□□□□ -1.23
TMEM39A-204ENST00000468545 TMEM92Q6UXU6 159 aa7.36□□□□□ -1.23
TMEM39A-204ENST00000468545 PCDH10Q9P2E7 1040 aa7.36□□□□□ -1.23
TMEM39A-204ENST00000468545 CAMK2BQ13554 666 aa7.35□□□□□ -1.23
TMEM39A-204ENST00000468545 NBR1Q14596 966 aa7.34□□□□□ -1.23
TMEM39A-204ENST00000468545 ARHGEF1Q92888 912 aaKnown RBP7.34□□□□□ -1.23
TMEM39A-204ENST00000468545 UNC13AQ9UPW8 1703 aa7.34□□□□□ -1.23
TMEM39A-204ENST00000468545 PLPP6Q8IY26 295 aa7.33□□□□□ -1.24
TMEM39A-204ENST00000468545 MARVELD3Q96A59 401 aa7.33□□□□□ -1.24
TMEM39A-204ENST00000468545 CDAN1Q8IWY9 1227 aa7.31□□□□□ -1.24
TMEM39A-204ENST00000468545 ARIH1Q9Y4X5 557 aaPredicted RBP7.31□□□□□ -1.24
TMEM39A-204ENST00000468545 BICRAQ9NZM4 1560 aa7.29□□□□□ -1.24
TMEM39A-204ENST00000468545 HOXB3P14651 431 aaPredicted RBP7.28□□□□□ -1.24
TMEM39A-204ENST00000468545 EMILIN3Q9NT22 766 aa7.28□□□□□ -1.24
TMEM39A-204ENST00000468545 EMP3P54852 163 aa7.27□□□□□ -1.25
TMEM39A-204ENST00000468545 SUPT5HO00267 1087 aaKnown RBP7.26□□□□□ -1.25
TMEM39A-204ENST00000468545 ZNF710Q8N1W2 664 aa7.26□□□□□ -1.25
TMEM39A-204ENST00000468545 DOK7Q18PE1 504 aa7.25□□□□□ -1.25
TMEM39A-204ENST00000468545 DPYSL4O14531 572 aa7.24□□□□□ -1.25
TMEM39A-204ENST00000468545 SLC34A2O95436 690 aa7.24□□□□□ -1.25
TMEM39A-204ENST00000468545 OXER1Q8TDS5 423 aa7.24□□□□□ -1.25
TMEM39A-204ENST00000468545 FAM205CA6NFA0 338 aa7.23□□□□□ -1.25
TMEM39A-204ENST00000468545 PDIA6Q15084 440 aa7.23□□□□□ -1.25
TMEM39A-204ENST00000468545 UPF1Q92900 1129 aaKnown RBP eCLIP7.23□□□□□ -1.25
TMEM39A-204ENST00000468545 SPDYE16A6NNV3 312 aaPredicted RBP7.22□□□□□ -1.25
TMEM39A-204ENST00000468545 MAP3K9P80192 1104 aa7.22□□□□□ -1.25
TMEM39A-204ENST00000468545 PTCD2Q8WV60 388 aaKnown RBP7.22□□□□□ -1.25
TMEM39A-204ENST00000468545 CECR2Q9BXF3 1484 aa7.22□□□□□ -1.25
TMEM39A-204ENST00000468545 RIMBP2O15034 1052 aa7.21□□□□□ -1.26
TMEM39A-204ENST00000468545 SEMA3EO15041 775 aa7.21□□□□□ -1.26
TMEM39A-204ENST00000468545 HOXB1P14653 301 aaPredicted RBP7.21□□□□□ -1.26
TMEM39A-204ENST00000468545 HS3ST6Q96QI5 342 aa7.21□□□□□ -1.26
TMEM39A-204ENST00000468545 POTEB3A0JP26 581 aa7.2□□□□□ -1.26
TMEM39A-204ENST00000468545 TESPA1A2RU30 521 aaPredicted RBP7.2□□□□□ -1.26
TMEM39A-204ENST00000468545 TBC1D12O60347 775 aa7.2□□□□□ -1.26
TMEM39A-204ENST00000468545 POTEBQ6S5H4 581 aa7.2□□□□□ -1.26
TMEM39A-204ENST00000468545 ZNF316A6NFI3 1004 aaPredicted RBP7.19□□□□□ -1.26
TMEM39A-204ENST00000468545 TULP1O00294 542 aaPredicted RBP7.19□□□□□ -1.26
TMEM39A-204ENST00000468545 ZSWIM6Q9HCJ5 1215 aa7.17□□□□□ -1.26
TMEM39A-204ENST00000468545 PCDHGA4Q9Y5G9 962 aa7.17□□□□□ -1.26
TMEM39A-204ENST00000468545 ERBB3P21860 1342 aa7.17□□□□□ -1.26
TMEM39A-204ENST00000468545 EVI5O60447 810 aa7.16□□□□□ -1.26
TMEM39A-204ENST00000468545 SMYD5Q6GMV2 418 aa7.16□□□□□ -1.26
TMEM39A-204ENST00000468545 GPR153Q6NV75 609 aa7.16□□□□□ -1.26
TMEM39A-204ENST00000468545 ARSIQ5FYB1 569 aa7.15□□□□□ -1.26
TMEM39A-204ENST00000468545 MLLT3P42568 568 aaPredicted RBP7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 PTGER2P43116 358 aa7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 VARS2Q5ST30 1063 aaKnown RBP7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 MROH2BQ7Z745 1585 aa7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 RSF1Q96T23 1441 aaPredicted RBP7.14□□□□□ -1.27
TMEM39A-204ENST00000468545 LMOD2Q6P5Q4 547 aa7.13□□□□□ -1.27
TMEM39A-204ENST00000468545 KHSRPQ92945 711 aaKnown RBP eCLIP7.13□□□□□ -1.27
TMEM39A-204ENST00000468545 KRTAP3-3Q9BYR6 98 aa7.13□□□□□ -1.27
TMEM39A-204ENST00000468545 KRTAP3-2Q9BYR7 98 aa7.13□□□□□ -1.27
TMEM39A-204ENST00000468545 ANO8Q9HCE9 1232 aaPredicted RBP7.13□□□□□ -1.27
TMEM39A-204ENST00000468545 BAZ1AQ9NRL2 1556 aaPredicted RBP7.12□□□□□ -1.27
TMEM39A-204ENST00000468545 SPNS2Q8IVW8 549 aa7.12□□□□□ -1.27
TMEM39A-204ENST00000468545 KDM4FA0A1W2PPD8 638 aa7.11□□□□□ -1.27
TMEM39A-204ENST00000468545 SMARCA4P51532 1647 aa7.11□□□□□ -1.27
TMEM39A-204ENST00000468545 TPRNQ4KMQ1 711 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms