RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MROH2BQ7Z745 1585 aa10.78□□□□□ -0.68
HMGB1-207ENST00000468384 MAGI1Q96QZ7 1491 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-207ENST00000468384 POTEB3A0JP26 581 aa10.77□□□□□ -0.69
HMGB1-207ENST00000468384 POTEBQ6S5H4 581 aa10.77□□□□□ -0.69
HMGB1-207ENST00000468384 BMP2KQ9NSY1 1161 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-207ENST00000468384 TRPC6Q9Y210 931 aa10.77□□□□□ -0.69
HMGB1-207ENST00000468384 TDRD9Q8NDG6 1382 aaKnown RBP10.77□□□□□ -0.69
HMGB1-207ENST00000468384 FOXD4L1Q9NU39 408 aa10.75□□□□□ -0.69
HMGB1-207ENST00000468384 CEP170Q5SW79 1584 aa10.74□□□□□ -0.69
HMGB1-207ENST00000468384 SEC24BO95487 1268 aa10.73□□□□□ -0.69
HMGB1-207ENST00000468384 PPRC1Q5VV67 1664 aaKnown RBP10.7□□□□□ -0.7
HMGB1-207ENST00000468384 ABCC8Q09428 1581 aa10.68□□□□□ -0.7
HMGB1-207ENST00000468384 IQSEC2Q5JU85 1478 aa10.66□□□□□ -0.7
HMGB1-207ENST00000468384 ADAMTSL3P82987 1691 aa10.63□□□□□ -0.71
HMGB1-207ENST00000468384 GRIN2BQ13224 1484 aa10.63□□□□□ -0.71
HMGB1-207ENST00000468384 RAD54L2Q9Y4B4 1467 aa10.63□□□□□ -0.71
HMGB1-207ENST00000468384 RNF166Q96A37 237 aaPredicted RBP10.63□□□□□ -0.71
HMGB1-207ENST00000468384 HS3ST6Q96QI5 342 aa10.63□□□□□ -0.71
HMGB1-207ENST00000468384 UBAP1LF5GYI3 381 aa10.62□□□□□ -0.71
HMGB1-207ENST00000468384 EMP3P54852 163 aa10.62□□□□□ -0.71
HMGB1-207ENST00000468384 POLA1P09884 1462 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-207ENST00000468384 DNMBPQ6XZF7 1577 aa10.61□□□□□ -0.71
HMGB1-207ENST00000468384 KIF21BO75037 1637 aa10.61□□□□□ -0.71
HMGB1-207ENST00000468384 SHROOM2Q13796 1616 aa10.6□□□□□ -0.71
HMGB1-207ENST00000468384 ADCY10Q96PN6 1610 aa10.6□□□□□ -0.71
HMGB1-207ENST00000468384 HSPA1LP34931 641 aa10.59□□□□□ -0.71
HMGB1-207ENST00000468384 FAM205CA6NFA0 338 aa10.58□□□□□ -0.72
HMGB1-207ENST00000468384 SOGA1O94964 1423 aa10.57□□□□□ -0.72
HMGB1-207ENST00000468384 PRG4Q92954 1404 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-207ENST00000468384 GLI2P10070 1586 aa10.56□□□□□ -0.72
HMGB1-207ENST00000468384 WDR97A6NE52 1622 aa10.56□□□□□ -0.72
HMGB1-207ENST00000468384 LTBP4Q8N2S1 1624 aa10.56□□□□□ -0.72
HMGB1-207ENST00000468384 PTPRTO14522 1441 aa10.56□□□□□ -0.72
HMGB1-207ENST00000468384 YEATS2Q9ULM3 1422 aa10.56□□□□□ -0.72
HMGB1-207ENST00000468384 TEX14Q8IWB6 1497 aa10.55□□□□□ -0.72
HMGB1-207ENST00000468384 MNX1P50219 401 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-207ENST00000468384 RGS17Q9UGC6 210 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-207ENST00000468384 NUP160Q12769 1436 aa10.52□□□□□ -0.73
HMGB1-207ENST00000468384 EHMT2Q96KQ7 1210 aa10.52□□□□□ -0.73
HMGB1-207ENST00000468384 MADDQ8WXG6 1647 aa10.51□□□□□ -0.73
HMGB1-207ENST00000468384 TTLL13PA6NNM8 815 aa10.5□□□□□ -0.73
HMGB1-207ENST00000468384 SNPHO15079 494 aa10.5□□□□□ -0.73
HMGB1-207ENST00000468384 GRIN2AQ12879 1464 aa10.49□□□□□ -0.73
HMGB1-207ENST00000468384 TIE1P35590 1138 aa10.49□□□□□ -0.73
HMGB1-207ENST00000468384 KIF12Q96FN5 646 aa10.49□□□□□ -0.73
HMGB1-207ENST00000468384 PRDM2Q13029 1718 aa10.49□□□□□ -0.73
HMGB1-207ENST00000468384 TSPYL2Q9H2G4 693 aaPredicted RBP10.48□□□□□ -0.73
HMGB1-207ENST00000468384 ASXL2Q76L83 1435 aa10.46□□□□□ -0.74
HMGB1-207ENST00000468384 PLB1Q6P1J6 1458 aa10.46□□□□□ -0.74
HMGB1-207ENST00000468384 STRCQ7RTU9 1775 aa10.45□□□□□ -0.74
HMGB1-207ENST00000468384 JPH4Q96JJ6 628 aa10.45□□□□□ -0.74
HMGB1-207ENST00000468384 ATXN8OSP0DMR3 200 aa10.44□□□□□ -0.74
HMGB1-207ENST00000468384 UPF1Q92900 1129 aaKnown RBP eCLIP10.44□□□□□ -0.74
HMGB1-207ENST00000468384 TRIM35Q9UPQ4 493 aa10.44□□□□□ -0.74
HMGB1-207ENST00000468384 CCDC61Q9Y6R9 512 aa10.44□□□□□ -0.74
HMGB1-207ENST00000468384 POTEAQ6S8J7 498 aa10.43□□□□□ -0.74
HMGB1-207ENST00000468384 MAP3K4Q9Y6R4 1608 aa10.43□□□□□ -0.74
HMGB1-207ENST00000468384 BCORL1Q5H9F3 1711 aa10.42□□□□□ -0.74
HMGB1-207ENST00000468384 MYT1LQ9UL68 1186 aa10.42□□□□□ -0.74
HMGB1-207ENST00000468384 KIAA0586Q9BVV6 1533 aa10.42□□□□□ -0.74
HMGB1-207ENST00000468384 RIMS1Q86UR5 1692 aaKnown RBP10.41□□□□□ -0.74
HMGB1-207ENST00000468384 PIP4K2BP78356 416 aa10.4□□□□□ -0.74
HMGB1-207ENST00000468384 IER5LQ5T953 404 aa10.4□□□□□ -0.74
HMGB1-207ENST00000468384 ARID4BQ4LE39 1312 aaPredicted RBP10.39□□□□□ -0.75
HMGB1-207ENST00000468384 WIZO95785 1651 aa10.38□□□□□ -0.75
HMGB1-207ENST00000468384 PBRM1Q86U86 1689 aa10.38□□□□□ -0.75
HMGB1-207ENST00000468384 MAP3K13O43283 966 aa10.38□□□□□ -0.75
HMGB1-207ENST00000468384 EPRSP07814 1512 aaKnown RBP10.38□□□□□ -0.75
HMGB1-207ENST00000468384 SETD1AO15047 1707 aaKnown RBP10.37□□□□□ -0.75
HMGB1-207ENST00000468384 CFAP43Q8NDM7 1665 aa10.37□□□□□ -0.75
HMGB1-207ENST00000468384 FGD5Q6ZNL6 1462 aa10.32□□□□□ -0.76
HMGB1-207ENST00000468384 ABCC2Q92887 1545 aa10.32□□□□□ -0.76
HMGB1-207ENST00000468384 ZBTB22O15209 634 aa10.31□□□□□ -0.76
HMGB1-207ENST00000468384 RBM33Q96EV2 1170 aaKnown RBP10.31□□□□□ -0.76
HMGB1-207ENST00000468384 PLCG2P16885 1265 aa10.3□□□□□ -0.76
HMGB1-207ENST00000468384 STAG3Q9UJ98 1225 aa10.3□□□□□ -0.76
HMGB1-207ENST00000468384 TOM1O60784 492 aa10.29□□□□□ -0.76
HMGB1-207ENST00000468384 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.29□□□□□ -0.76
HMGB1-207ENST00000468384 ZNF335Q9H4Z2 1342 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-207ENST00000468384 PREX1Q8TCU6 1659 aa10.27□□□□□ -0.77
HMGB1-207ENST00000468384 SLC34A2O95436 690 aa10.26□□□□□ -0.77
HMGB1-207ENST00000468384 MAGI3Q5TCQ9 1506 aa10.25□□□□□ -0.77
HMGB1-207ENST00000468384 ADAMTS12P58397 1594 aa10.25□□□□□ -0.77
HMGB1-207ENST00000468384 IRX5P78411 483 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-207ENST00000468384 PLA2G2EQ9NZK7 142 aa10.22□□□□□ -0.77
HMGB1-207ENST00000468384 ARAP3Q8WWN8 1544 aa10.22□□□□□ -0.77
HMGB1-207ENST00000468384 UHRF1BP1Q6BDS2 1440 aa10.21□□□□□ -0.78
HMGB1-207ENST00000468384 CD109Q6YHK3 1445 aa10.21□□□□□ -0.78
HMGB1-207ENST00000468384 FHAD1B1AJZ9 1412 aa10.2□□□□□ -0.78
HMGB1-207ENST00000468384 PTPRGP23470 1445 aa10.2□□□□□ -0.78
HMGB1-207ENST00000468384 ABCA5Q8WWZ7 1642 aa10.2□□□□□ -0.78
HMGB1-207ENST00000468384 CUL7Q14999 1698 aa10.19□□□□□ -0.78
HMGB1-207ENST00000468384 TTBK1Q5TCY1 1321 aaPredicted RBP10.17□□□□□ -0.78
HMGB1-207ENST00000468384 SENP3-EIF4A1A0A087X0R7 540 aa10.17□□□□□ -0.78
HMGB1-207ENST00000468384 TTC37Q6PGP7 1564 aa10.17□□□□□ -0.78
HMGB1-207ENST00000468384 SETBP1Q9Y6X0 1596 aa10.17□□□□□ -0.78
HMGB1-207ENST00000468384 TOP2AP11388 1531 aaKnown RBP10.17□□□□□ -0.78
HMGB1-207ENST00000468384 RAPGEF3O95398 923 aa10.16□□□□□ -0.78
HMGB1-207ENST00000468384 CEBPAP49715 358 aaPredicted RBP10.16□□□□□ -0.78
HMGB1-207ENST00000468384 NCOA1Q15788 1441 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms