RNA–Protein interactions for RNA: ENST00000462668.5

SMC4-203, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 4,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-203ENST00000462668 NECTIN2Q92692 538 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 TRAIPQ9BWF2 469 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 FAM117AQ9C073 453 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 PITPNM1O00562 1244 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 IFNL1Q8IU54 200 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 IL27Q8NEV9 243 aa5.53□□□□□ -1.52
SMC4-203ENST00000462668 RBM42Q9BTD8 480 aaKnown RBP5.53□□□□□ -1.52
SMC4-203ENST00000462668 SPDYE16A6NNV3 312 aaPredicted RBP5.53□□□□□ -1.52
SMC4-203ENST00000462668 MINK1Q8N4C8 1332 aaPredicted RBP5.52□□□□□ -1.53
SMC4-203ENST00000462668 RANGAP1P46060 587 aaPredicted RBP5.52□□□□□ -1.53
SMC4-203ENST00000462668 OXER1Q8TDS5 423 aa5.52□□□□□ -1.53
SMC4-203ENST00000462668 LARP6Q9BRS8 491 aaKnown RBP5.52□□□□□ -1.53
SMC4-203ENST00000462668 KIF12Q96FN5 646 aa5.51□□□□□ -1.53
SMC4-203ENST00000462668 TRAK2O60296 914 aa5.51□□□□□ -1.53
SMC4-203ENST00000462668 DDRGK1Q96HY6 314 aa5.5□□□□□ -1.53
SMC4-203ENST00000462668 MAP2K5Q13163 448 aa5.5□□□□□ -1.53
SMC4-203ENST00000462668 EMILIN3Q9NT22 766 aa5.5□□□□□ -1.53
SMC4-203ENST00000462668 FARP1Q9Y4F1 1045 aaPredicted RBP5.5□□□□□ -1.53
SMC4-203ENST00000462668 PTGER2P43116 358 aa5.5□□□□□ -1.53
SMC4-203ENST00000462668 GPHNQ9NQX3 736 aaPredicted RBP5.5□□□□□ -1.53
SMC4-203ENST00000462668 CACNB1Q02641 598 aaPredicted RBP5.49□□□□□ -1.53
SMC4-203ENST00000462668 PARP9Q8IXQ6 854 aa5.48□□□□□ -1.53
SMC4-203ENST00000462668 IRF6O14896 467 aa5.47□□□□□ -1.53
SMC4-203ENST00000462668 ZNF316A6NFI3 1004 aaPredicted RBP5.47□□□□□ -1.53
SMC4-203ENST00000462668 KIF3CO14782 793 aa5.46□□□□□ -1.54
SMC4-203ENST00000462668 SOCS7O14512 581 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 MCM6Q14566 821 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 PPP1R15BQ5SWA1 713 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 RGS22Q8NE09 1264 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 CABP2Q9NPB3 220 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 CCDC102AQ96A19 550 aa5.45□□□□□ -1.54
SMC4-203ENST00000462668 OSBPP22059 807 aa5.44□□□□□ -1.54
SMC4-203ENST00000462668 FXR2P51116 673 aaKnown RBP eCLIP5.44□□□□□ -1.54
SMC4-203ENST00000462668 MAP3K13O43283 966 aa5.44□□□□□ -1.54
SMC4-203ENST00000462668 SH3D19Q5HYK7 790 aa5.43□□□□□ -1.54
SMC4-203ENST00000462668 CLEC11AQ9Y240 323 aa5.43□□□□□ -1.54
SMC4-203ENST00000462668 FOXK1P85037 733 aa5.43□□□□□ -1.54
SMC4-203ENST00000462668 TMEM121BQ9BXQ6 578 aaPredicted RBP5.43□□□□□ -1.54
SMC4-203ENST00000462668 CCDC82Q8N4S0 544 aa5.43□□□□□ -1.54
SMC4-203ENST00000462668 TSPYL2Q9H2G4 693 aaPredicted RBP5.43□□□□□ -1.54
SMC4-203ENST00000462668 APBB1O00213 710 aa5.42□□□□□ -1.54
SMC4-203ENST00000462668 CCDC9Q9Y3X0 531 aaKnown RBP5.42□□□□□ -1.54
SMC4-203ENST00000462668 ARID3CA6NKF2 412 aa5.41□□□□□ -1.54
SMC4-203ENST00000462668 MS4A1P11836 297 aa5.41□□□□□ -1.54
SMC4-203ENST00000462668 PDIA4P13667 645 aaKnown RBP5.41□□□□□ -1.54
SMC4-203ENST00000462668 KRI1Q8N9T8 703 aaKnown RBP5.41□□□□□ -1.54
SMC4-203ENST00000462668 PRIM1P49642 420 aaKnown RBP5.4□□□□□ -1.55
SMC4-203ENST00000462668 DPYSL4O14531 572 aa5.39□□□□□ -1.55
SMC4-203ENST00000462668 GNPATO15228 680 aa5.39□□□□□ -1.55
SMC4-203ENST00000462668 DSG2Q14126 1118 aa5.39□□□□□ -1.55
SMC4-203ENST00000462668 KCTD17Q8N5Z5 321 aa5.39□□□□□ -1.55
SMC4-203ENST00000462668 CLUAP1Q96AJ1 413 aa5.39□□□□□ -1.55
SMC4-203ENST00000462668 REPIN1Q9BWE0 567 aaKnown RBP5.39□□□□□ -1.55
SMC4-203ENST00000462668 PROSER2Q86WR7 435 aaPredicted RBP5.38□□□□□ -1.55
SMC4-203ENST00000462668 PLSCR2Q9NRY7 297 aa5.38□□□□□ -1.55
SMC4-203ENST00000462668 HIC1Q14526 733 aa5.38□□□□□ -1.55
SMC4-203ENST00000462668 ZBTB7CA1YPR0 619 aa5.37□□□□□ -1.55
SMC4-203ENST00000462668 PTGDRQ13258 359 aa5.37□□□□□ -1.55
SMC4-203ENST00000462668 FECHP22830 423 aa5.37□□□□□ -1.55
SMC4-203ENST00000462668 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.37□□□□□ -1.55
SMC4-203ENST00000462668 CHADLQ6NUI6 762 aa5.37□□□□□ -1.55
SMC4-203ENST00000462668 SERPINA10Q9UK55 444 aa5.37□□□□□ -1.55
SMC4-203ENST00000462668 SKIV2LQ15477 1246 aaKnown RBP5.36□□□□□ -1.55
SMC4-203ENST00000462668 FCHSD2O94868 740 aa5.35□□□□□ -1.55
SMC4-203ENST00000462668 TUSC1Q2TAM9 212 aa5.35□□□□□ -1.55
SMC4-203ENST00000462668 BANK1Q8NDB2 785 aa5.35□□□□□ -1.55
SMC4-203ENST00000462668 GIGYF2Q6Y7W6 1299 aaKnown RBP5.35□□□□□ -1.55
SMC4-203ENST00000462668 NPDC1Q9NQX5 325 aaPredicted RBP5.34□□□□□ -1.55
SMC4-203ENST00000462668 SPDYE5A6NIY4 337 aa5.33□□□□□ -1.56
SMC4-203ENST00000462668 PCMTD1Q96MG8 357 aaPredicted RBP5.33□□□□□ -1.56
SMC4-203ENST00000462668 ANO8Q9HCE9 1232 aaPredicted RBP5.33□□□□□ -1.56
SMC4-203ENST00000462668 IRF5Q13568 498 aa5.32□□□□□ -1.56
SMC4-203ENST00000462668 FBXO31Q5XUX0 539 aaPredicted RBP5.32□□□□□ -1.56
SMC4-203ENST00000462668 PPP2R2DQ66LE6 453 aa5.32□□□□□ -1.56
SMC4-203ENST00000462668 POM121Q96HA1 1249 aa5.32□□□□□ -1.56
SMC4-203ENST00000462668 SRPK2P78362 688 aaKnown RBP5.32□□□□□ -1.56
SMC4-203ENST00000462668 ARID3AQ99856 593 aa5.32□□□□□ -1.56
SMC4-203ENST00000462668 COG6Q9Y2V7 657 aa5.32□□□□□ -1.56
SMC4-203ENST00000462668 PDCD7Q8N8D1 485 aaKnown RBP5.32□□□□□ -1.56
SMC4-203ENST00000462668 MICALL2Q8IY33 904 aa5.31□□□□□ -1.56
SMC4-203ENST00000462668 PHOX2BQ99453 314 aa5.31□□□□□ -1.56
SMC4-203ENST00000462668 TIE1P35590 1138 aa5.31□□□□□ -1.56
SMC4-203ENST00000462668 TRPC6Q9Y210 931 aa5.31□□□□□ -1.56
SMC4-203ENST00000462668 TTC13Q8NBP0 860 aa5.3□□□□□ -1.56
SMC4-203ENST00000462668 PPP1R15AO75807 674 aaPredicted RBP5.29□□□□□ -1.56
SMC4-203ENST00000462668 PRKAR2AP13861 404 aaKnown RBP5.29□□□□□ -1.56
SMC4-203ENST00000462668 TMEM106CQ9BVX2 250 aa5.28□□□□□ -1.56
SMC4-203ENST00000462668 FAM217BQ9NTX9 383 aaPredicted RBP5.28□□□□□ -1.56
SMC4-203ENST00000462668 PLPP6Q8IY26 295 aa5.28□□□□□ -1.56
SMC4-203ENST00000462668 RETREG2Q8NC44 543 aa5.27□□□□□ -1.57
SMC4-203ENST00000462668 GPCPD1Q9NPB8 672 aa5.27□□□□□ -1.57
SMC4-203ENST00000462668 KDM4FA0A1W2PPD8 638 aa5.27□□□□□ -1.57
SMC4-203ENST00000462668 IGSF5Q9NSI5 407 aa5.27□□□□□ -1.57
SMC4-203ENST00000462668 TTLL13PA6NNM8 815 aa5.27□□□□□ -1.57
SMC4-203ENST00000462668 IRX5P78411 483 aaPredicted RBP5.26□□□□□ -1.57
SMC4-203ENST00000462668 CLCN1P35523 988 aa5.26□□□□□ -1.57
SMC4-203ENST00000462668 KCNA1Q09470 495 aa5.26□□□□□ -1.57
SMC4-203ENST00000462668 PAK3O75914 559 aaPredicted RBP5.25□□□□□ -1.57
SMC4-203ENST00000462668 TBC1D12O60347 775 aa5.25□□□□□ -1.57
SMC4-203ENST00000462668 PATL2C9JE40 543 aaKnown RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms