RNA–Protein interactions for RNA: ENST00000461624.1

SPTA1-202, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 2

Gene SPTA1, Length 930 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-202ENST00000461624 SOX12O15370 315 aa11.26□□□□□ -0.61
SPTA1-202ENST00000461624 HMGXB3Q12766 1538 aa11.25□□□□□ -0.61
SPTA1-202ENST00000461624 ATAD2BQ9ULI0 1458 aa11.24□□□□□ -0.61
SPTA1-202ENST00000461624 ECM2O94769 699 aaPredicted RBP11.22□□□□□ -0.61
SPTA1-202ENST00000461624 KIF21AQ7Z4S6 1674 aa11.19□□□□□ -0.62
SPTA1-202ENST00000461624 SMARCA2P51531 1590 aa11.19□□□□□ -0.62
SPTA1-202ENST00000461624 PKD2Q13563 968 aa11.18□□□□□ -0.62
SPTA1-202ENST00000461624 BCL11BQ9C0K0 894 aaPredicted RBP11.18□□□□□ -0.62
SPTA1-202ENST00000461624 LAMC3Q9Y6N6 1575 aa11.17□□□□□ -0.62
SPTA1-202ENST00000461624 CDAN1Q8IWY9 1227 aa11.16□□□□□ -0.62
SPTA1-202ENST00000461624 MICALL2Q8IY33 904 aa11.16□□□□□ -0.62
SPTA1-202ENST00000461624 MS4A4AQ96JQ5 239 aa11.16□□□□□ -0.62
SPTA1-202ENST00000461624 PHF8Q9UPP1 1060 aa11.16□□□□□ -0.62
SPTA1-202ENST00000461624 BAZ1AQ9NRL2 1556 aaPredicted RBP11.15□□□□□ -0.62
SPTA1-202ENST00000461624 NLRP6P59044 892 aa11.14□□□□□ -0.63
SPTA1-202ENST00000461624 STK24Q9Y6E0 443 aa11.14□□□□□ -0.63
SPTA1-202ENST00000461624 STK25O00506 426 aa11.12□□□□□ -0.63
SPTA1-202ENST00000461624 SMARCA4P51532 1647 aa11.1□□□□□ -0.63
SPTA1-202ENST00000461624 RGL2O15211 777 aa11.1□□□□□ -0.63
SPTA1-202ENST00000461624 FBXO22Q8NEZ5 403 aa11.1□□□□□ -0.63
SPTA1-202ENST00000461624 MARVELD3Q96A59 401 aa11.1□□□□□ -0.63
SPTA1-202ENST00000461624 HOXB3P14651 431 aaPredicted RBP11.09□□□□□ -0.63
SPTA1-202ENST00000461624 WDR62O43379 1518 aa11.09□□□□□ -0.63
SPTA1-202ENST00000461624 EMP3P54852 163 aa11.08□□□□□ -0.64
SPTA1-202ENST00000461624 DOK7Q18PE1 504 aa11.08□□□□□ -0.64
SPTA1-202ENST00000461624 MFRPQ9BY79 579 aa11.07□□□□□ -0.64
SPTA1-202ENST00000461624 PDS5BQ9NTI5 1447 aa11.07□□□□□ -0.64
SPTA1-202ENST00000461624 BAZ1BQ9UIG0 1483 aaKnown RBP11.06□□□□□ -0.64
SPTA1-202ENST00000461624 TMEM92Q6UXU6 159 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 PEG3Q9GZU2 1588 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 RIMBP3CA6NJZ7 1639 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 RIMBP3BA6NNM3 1639 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 RIMBP3Q9UFD9 1639 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 MRC2Q9UBG0 1479 aa11.05□□□□□ -0.64
SPTA1-202ENST00000461624 ZNF710Q8N1W2 664 aa11.04□□□□□ -0.64
SPTA1-202ENST00000461624 RIMBP2O15034 1052 aa11.03□□□□□ -0.64
SPTA1-202ENST00000461624 HOXB1P14653 301 aaPredicted RBP11.01□□□□□ -0.65
SPTA1-202ENST00000461624 HS3ST6Q96QI5 342 aa10.99□□□□□ -0.65
SPTA1-202ENST00000461624 ZSWIM6Q9HCJ5 1215 aa10.99□□□□□ -0.65
SPTA1-202ENST00000461624 FAM205CA6NFA0 338 aa10.98□□□□□ -0.65
SPTA1-202ENST00000461624 ARHGEF11O15085 1522 aa10.95□□□□□ -0.66
SPTA1-202ENST00000461624 CADPSQ9ULU8 1353 aa10.94□□□□□ -0.66
SPTA1-202ENST00000461624 POTEB3A0JP26 581 aa10.94□□□□□ -0.66
SPTA1-202ENST00000461624 POTEBQ6S5H4 581 aa10.94□□□□□ -0.66
SPTA1-202ENST00000461624 HS6ST3Q8IZP7 471 aa10.94□□□□□ -0.66
SPTA1-202ENST00000461624 ERBB3P21860 1342 aa10.9□□□□□ -0.66
SPTA1-202ENST00000461624 KIF3CO14782 793 aa10.9□□□□□ -0.66
SPTA1-202ENST00000461624 SPNS2Q8IVW8 549 aa10.9□□□□□ -0.66
SPTA1-202ENST00000461624 GPR153Q6NV75 609 aa10.89□□□□□ -0.67
SPTA1-202ENST00000461624 KRTAP3-3Q9BYR6 98 aa10.89□□□□□ -0.67
SPTA1-202ENST00000461624 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
SPTA1-202ENST00000461624 CEP164Q9UPV0 1460 aa10.87□□□□□ -0.67
SPTA1-202ENST00000461624 C2orf72A6NCS6 295 aa10.87□□□□□ -0.67
SPTA1-202ENST00000461624 AMER1Q5JTC6 1135 aaPredicted RBP10.86□□□□□ -0.67
SPTA1-202ENST00000461624 MMRN1Q13201 1228 aa10.84□□□□□ -0.67
SPTA1-202ENST00000461624 TMC2Q8TDI7 906 aa10.84□□□□□ -0.67
SPTA1-202ENST00000461624 MROH2BQ7Z745 1585 aa10.83□□□□□ -0.68
SPTA1-202ENST00000461624 PPP1R37O75864 691 aa10.83□□□□□ -0.68
SPTA1-202ENST00000461624 CHGAP10645 457 aaKnown RBP10.83□□□□□ -0.68
SPTA1-202ENST00000461624 VARS2Q5ST30 1063 aaKnown RBP10.83□□□□□ -0.68
SPTA1-202ENST00000461624 ARAP1Q96P48 1450 aa10.82□□□□□ -0.68
SPTA1-202ENST00000461624 FANCD2Q9BXW9 1451 aa10.82□□□□□ -0.68
SPTA1-202ENST00000461624 URB2Q14146 1524 aaKnown RBP10.82□□□□□ -0.68
SPTA1-202ENST00000461624 ARSIQ5FYB1 569 aa10.81□□□□□ -0.68
SPTA1-202ENST00000461624 SLC34A2O95436 690 aa10.8□□□□□ -0.68
SPTA1-202ENST00000461624 RYDENQ9NUL5 291 aaKnown RBP10.79□□□□□ -0.68
SPTA1-202ENST00000461624 CYB5RLQ6IPT4 315 aa10.78□□□□□ -0.68
SPTA1-202ENST00000461624 ZNF687Q8N1G0 1237 aa10.78□□□□□ -0.68
SPTA1-202ENST00000461624 ZNF608Q9ULD9 1512 aaPredicted RBP10.75□□□□□ -0.69
SPTA1-202ENST00000461624 ZNF316A6NFI3 1004 aaPredicted RBP10.75□□□□□ -0.69
SPTA1-202ENST00000461624 CFTRP13569 1480 aa10.74□□□□□ -0.69
SPTA1-202ENST00000461624 KHSRPQ92945 711 aaKnown RBP eCLIP10.74□□□□□ -0.694e-6■■■□□ 14.8
SPTA1-202ENST00000461624 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
SPTA1-202ENST00000461624 PCDHGA4Q9Y5G9 962 aa10.73□□□□□ -0.69
SPTA1-202ENST00000461624 FOXK1P85037 733 aa10.71□□□□□ -0.69
SPTA1-202ENST00000461624 GPHNQ9NQX3 736 aaPredicted RBP10.71□□□□□ -0.69
SPTA1-202ENST00000461624 RSF1Q96T23 1441 aaPredicted RBP10.7□□□□□ -0.7
SPTA1-202ENST00000461624 NUDT7P0C024 238 aa10.7□□□□□ -0.7
SPTA1-202ENST00000461624 RTN4Q9NQC3 1192 aaKnown RBP10.7□□□□□ -0.7
SPTA1-202ENST00000461624 CHD1O14646 1710 aa10.7□□□□□ -0.7
SPTA1-202ENST00000461624 IFT140Q96RY7 1462 aa10.68□□□□□ -0.7
SPTA1-202ENST00000461624 EIF4G3O43432 1585 aaKnown RBP10.68□□□□□ -0.7
SPTA1-202ENST00000461624 PTCD2Q8WV60 388 aaKnown RBP10.67□□□□□ -0.7
SPTA1-202ENST00000461624 WIZO95785 1651 aa10.66□□□□□ -0.7
SPTA1-202ENST00000461624 PLPP6Q8IY26 295 aa10.66□□□□□ -0.7
SPTA1-202ENST00000461624 PBX2P40425 430 aa10.65□□□□□ -0.7
SPTA1-202ENST00000461624 PTGER2P43116 358 aa10.65□□□□□ -0.7
SPTA1-202ENST00000461624 LHX6Q9UPM6 363 aa10.65□□□□□ -0.7
SPTA1-202ENST00000461624 PSDA5PKW4 1024 aaPredicted RBP10.64□□□□□ -0.71
SPTA1-202ENST00000461624 DSG2Q14126 1118 aa10.63□□□□□ -0.71
SPTA1-202ENST00000461624 PRDM2Q13029 1718 aa10.61□□□□□ -0.71
SPTA1-202ENST00000461624 KDM4FA0A1W2PPD8 638 aa10.61□□□□□ -0.71
SPTA1-202ENST00000461624 CRISPLD2Q9H0B8 497 aa10.61□□□□□ -0.71
SPTA1-202ENST00000461624 CLASP1Q7Z460 1538 aa10.6□□□□□ -0.71
SPTA1-202ENST00000461624 GTPBP6O43824 516 aaPredicted RBP10.6□□□□□ -0.71
SPTA1-202ENST00000461624 TBC1D12O60347 775 aa10.6□□□□□ -0.71
SPTA1-202ENST00000461624 LSM11P83369 360 aaKnown RBP eCLIP10.6□□□□□ -0.71
SPTA1-202ENST00000461624 RNF166Q96A37 237 aaPredicted RBP10.6□□□□□ -0.71
SPTA1-202ENST00000461624 MYT1LQ9UL68 1186 aa10.59□□□□□ -0.71
SPTA1-202ENST00000461624 TOPBP1Q92547 1522 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms