RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 PREX2Q70Z35 1606 aa27.72■■■□□ 2.03
USP39-208ENST00000455732 SCAPERQ9BY12 1400 aa27.72■■■□□ 2.03
USP39-208ENST00000455732 ARHGAP5Q13017 1502 aa27.72■■■□□ 2.03
USP39-208ENST00000455732 ARHGEF40Q8TER5 1519 aa27.72■■■□□ 2.03
USP39-208ENST00000455732 CDC42BPAQ5VT25 1732 aa27.71■■■□□ 2.03
USP39-208ENST00000455732 POGZQ7Z3K3 1410 aa27.69■■■□□ 2.02
USP39-208ENST00000455732 VPS8Q8N3P4 1428 aa27.68■■■□□ 2.02
USP39-208ENST00000455732 MAGI2Q86UL8 1455 aa27.65■■■□□ 2.02
USP39-208ENST00000455732 HECW2Q9P2P5 1572 aa27.64■■■□□ 2.01
USP39-208ENST00000455732 ZFYVE16Q7Z3T8 1539 aa27.63■■■□□ 2.01
USP39-208ENST00000455732 ADAMTSL3P82987 1691 aa27.63■■■□□ 2.01
USP39-208ENST00000455732 YEATS2Q9ULM3 1422 aa27.62■■■□□ 2.01
USP39-208ENST00000455732 BCORL1Q5H9F3 1711 aa27.61■■■□□ 2.01
USP39-208ENST00000455732 SIGLEC1Q9BZZ2 1709 aa27.59■■■□□ 2.01
USP39-208ENST00000455732 KDM5CP41229 1560 aa27.59■■■□□ 2.01
USP39-208ENST00000455732 MTUS2Q5JR59 1369 aa27.59■■■□□ 2.01
USP39-208ENST00000455732 ZNF518AQ6AHZ1 1483 aa27.58■■■□□ 2.01
USP39-208ENST00000455732 ABCC1P33527 1531 aa27.58■■■□□ 2.01
USP39-208ENST00000455732 EHBP1L1Q8N3D4 1523 aa27.57■■■□□ 2
USP39-208ENST00000455732 GPATCH8Q9UKJ3 1502 aaKnown RBP27.57■■■□□ 2
USP39-208ENST00000455732 ITSN2Q9NZM3 1697 aa27.57■■■□□ 2
USP39-208ENST00000455732 ARHGEF12Q9NZN5 1544 aa27.55■■■□□ 2
USP39-208ENST00000455732 AFAP1Q8N556 730 aa27.53■■■□□ 2
USP39-208ENST00000455732 TIAM1Q13009 1591 aa27.52■■■□□ 2
USP39-208ENST00000455732 ARID4BQ4LE39 1312 aaPredicted RBP27.52■■■□□ 2
USP39-208ENST00000455732 SAMD9LQ8IVG5 1584 aa27.52■■■□□ 2
USP39-208ENST00000455732 MADDQ8WXG6 1647 aa27.5■■□□□ 1.99
USP39-208ENST00000455732 TRAPPC8Q9Y2L5 1435 aa27.5■■□□□ 1.99
USP39-208ENST00000455732 MAP3K1Q13233 1512 aa27.49■■□□□ 1.99
USP39-208ENST00000455732 ATP10AO60312 1499 aa27.49■■□□□ 1.99
USP39-208ENST00000455732 CCNB3Q8WWL7 1395 aa27.48■■□□□ 1.99
USP39-208ENST00000455732 MLH3Q9UHC1 1453 aa27.46■■□□□ 1.99
USP39-208ENST00000455732 PTPRMP28827 1452 aa27.45■■□□□ 1.99
USP39-208ENST00000455732 C9orf84Q5VXU9 1444 aa27.45■■□□□ 1.98
USP39-208ENST00000455732 DIP2CQ9Y2E4 1556 aa27.44■■□□□ 1.98
USP39-208ENST00000455732 SYCP2Q9BX26 1530 aa27.43■■□□□ 1.98
USP39-208ENST00000455732 ABCA6Q8N139 1617 aa27.43■■□□□ 1.98
USP39-208ENST00000455732 KIDINS220Q9ULH0 1771 aa27.43■■□□□ 1.98
USP39-208ENST00000455732 SUPT6HQ7KZ85 1726 aaKnown RBP27.42■■□□□ 1.98
USP39-208ENST00000455732 CFDP1Q9UEE9 299 aaPredicted RBP27.42■■□□□ 1.98
USP39-208ENST00000455732 ZNF777Q9ULD5 760 aaPredicted RBP27.42■■□□□ 1.98
USP39-208ENST00000455732 LRRC9Q6ZRR7 1453 aa27.42■■□□□ 1.98
USP39-208ENST00000455732 RIMS1Q86UR5 1692 aaKnown RBP27.41■■□□□ 1.98
USP39-208ENST00000455732 REREQ9P2R6 1566 aa27.4■■□□□ 1.98
USP39-208ENST00000455732 KIAA1107Q9UPP5 1409 aa27.4■■□□□ 1.98
USP39-208ENST00000455732 NCOA2Q15596 1464 aa27.38■■□□□ 1.97
USP39-208ENST00000455732 PLEKHH2Q8IVE3 1493 aa27.38■■□□□ 1.97
USP39-208ENST00000455732 FER1L4A9Z1Z3 1794 aa27.36■■□□□ 1.97
USP39-208ENST00000455732 HNRNPMP52272 730 aaKnown RBP eCLIP27.35■■□□□ 1.97
USP39-208ENST00000455732 MYT1LQ9UL68 1186 aa27.35■■□□□ 1.97
USP39-208ENST00000455732 MLECQ14165 292 aa27.31■■□□□ 1.96
USP39-208ENST00000455732 ILDR1Q86SU0 546 aaPredicted RBP27.31■■□□□ 1.96
USP39-208ENST00000455732 ZNF644Q9H582 1327 aaPredicted RBP27.3■■□□□ 1.96
USP39-208ENST00000455732 KANK4Q5T7N3 995 aaPredicted RBP27.29■■□□□ 1.96
USP39-208ENST00000455732 AGLP35573 1532 aa27.29■■□□□ 1.96
USP39-208ENST00000455732 INO80Q9ULG1 1556 aaPredicted RBP27.29■■□□□ 1.96
USP39-208ENST00000455732 MBD5Q9P267 1494 aa27.28■■□□□ 1.96
USP39-208ENST00000455732 ATP7AQ04656 1500 aa27.27■■□□□ 1.96
USP39-208ENST00000455732 SPAG9O60271 1321 aaKnown RBP27.27■■□□□ 1.96
USP39-208ENST00000455732 APLP2Q06481 763 aa27.25■■□□□ 1.95
USP39-208ENST00000455732 CAMSAP2Q08AD1 1489 aa27.22■■□□□ 1.95
USP39-208ENST00000455732 PLXNC1O60486 1568 aa27.18■■□□□ 1.94
USP39-208ENST00000455732 ADGBQ8N7X0 1667 aa27.17■■□□□ 1.94
USP39-208ENST00000455732 LMTK3Q96Q04 1460 aa27.16■■□□□ 1.94
USP39-208ENST00000455732 MYOM3Q5VTT5 1437 aa27.16■■□□□ 1.94
USP39-208ENST00000455732 RTEL1-TNFRSF6BF6WH68 1400 aa27.15■■□□□ 1.94
USP39-208ENST00000455732 MIA2Q96PC5 1412 aa27.15■■□□□ 1.94
USP39-208ENST00000455732 ARHGEF5Q12774 1597 aa27.14■■□□□ 1.94
USP39-208ENST00000455732 CCDC141Q6ZP82 1450 aa27.14■■□□□ 1.94
USP39-208ENST00000455732 A2MP01023 1474 aa27.13■■□□□ 1.93
USP39-208ENST00000455732 PLPPR3Q6T4P5 718 aa27.12■■□□□ 1.93
USP39-208ENST00000455732 RSPH4AQ5TD94 716 aa27.11■■□□□ 1.93
USP39-208ENST00000455732 C3P01024 1663 aa27.1■■□□□ 1.93
USP39-208ENST00000455732 SETD1BQ9UPS6 1966 aaKnown RBP27.09■■□□□ 1.93
USP39-208ENST00000455732 CEBPAP49715 358 aaPredicted RBP27.07■■□□□ 1.92
USP39-208ENST00000455732 PREX1Q8TCU6 1659 aa27.05■■□□□ 1.92
USP39-208ENST00000455732 CNTLNQ9NXG0 1405 aa27.04■■□□□ 1.92
USP39-208ENST00000455732 MROH2AA6NES4 1674 aa27.04■■□□□ 1.92
USP39-208ENST00000455732 DHX29Q7Z478 1369 aaKnown RBP27.01■■□□□ 1.91
USP39-208ENST00000455732 ESF1Q9H501 851 aaKnown RBP27.01■■□□□ 1.91
USP39-208ENST00000455732 MAST1Q9Y2H9 1570 aa27.01■■□□□ 1.91
USP39-208ENST00000455732 FGD6Q6ZV73 1430 aa26.99■■□□□ 1.91
USP39-208ENST00000455732 CLTCQ00610 1675 aaKnown RBP26.99■■□□□ 1.91
USP39-208ENST00000455732 TSPY4P0CV99 314 aa26.98■■□□□ 1.91
USP39-208ENST00000455732 TSPY10P0CW01 314 aa26.98■■□□□ 1.91
USP39-208ENST00000455732 PTPN23Q9H3S7 1636 aa26.98■■□□□ 1.91
USP39-208ENST00000455732 TCOF1Q13428 1488 aaKnown RBP26.96■■□□□ 1.91
USP39-208ENST00000455732 HSPA2P54652 639 aa26.95■■□□□ 1.9
USP39-208ENST00000455732 GGT6Q6P531 493 aa26.94■■□□□ 1.9
USP39-208ENST00000455732 ZMYM3Q14202 1370 aa26.93■■□□□ 1.9
USP39-208ENST00000455732 CROCC2H7BZ55 1655 aa26.92■■□□□ 1.9
USP39-208ENST00000455732 FBXO41Q8TF61 875 aa26.92■■□□□ 1.9
USP39-208ENST00000455732 PPP6R1Q9UPN7 881 aa26.92■■□□□ 1.9
USP39-208ENST00000455732 UHRF1BP1Q6BDS2 1440 aa26.9■■□□□ 1.9
USP39-208ENST00000455732 SHANK2Q9UPX8 1470 aa26.89■■□□□ 1.9
USP39-208ENST00000455732 KIF3BO15066 747 aa26.88■■□□□ 1.89
USP39-208ENST00000455732 NPATQ14207 1427 aa26.88■■□□□ 1.89
USP39-208ENST00000455732 DNMT1P26358 1616 aaKnown RBP26.87■■□□□ 1.89
USP39-208ENST00000455732 ABCC5O15440 1437 aa26.86■■□□□ 1.89
USP39-208ENST00000455732 FAM135AQ9P2D6 1515 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms