RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 NAIPQ13075 1403 aa8.76□□□□□ -1.01
VPS50-205ENST00000441602 CHIC2Q9UKJ5 165 aa8.76□□□□□ -1.01
VPS50-205ENST00000441602 PLEKHH2Q8IVE3 1493 aa8.76□□□□□ -1.01
VPS50-205ENST00000441602 TSPY4P0CV99 314 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 TSPY10P0CW01 314 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 RRP7BPQ9NSQ0 103 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 TIMELESSQ9UNS1 1208 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 ANKRD30AQ9BXX3 1397 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 KDM5BQ9UGL1 1544 aa8.75□□□□□ -1.01
VPS50-205ENST00000441602 TRIM52Q96A61 297 aa8.74□□□□□ -1.01
VPS50-205ENST00000441602 PTPRKQ15262 1439 aa8.74□□□□□ -1.01
VPS50-205ENST00000441602 ABCC5O15440 1437 aa8.74□□□□□ -1.01
VPS50-205ENST00000441602 GCC2Q8IWJ2 1684 aa8.74□□□□□ -1.01
VPS50-205ENST00000441602 SHANK2Q9UPX8 1470 aa8.72□□□□□ -1.01
VPS50-205ENST00000441602 EFCAB2Q5VUJ9 269 aa8.72□□□□□ -1.01
VPS50-205ENST00000441602 ZCCHC11Q5TAX3 1644 aaKnown RBP8.72□□□□□ -1.01
VPS50-205ENST00000441602 ARHGAP5Q13017 1502 aa8.71□□□□□ -1.01
VPS50-205ENST00000441602 KCNH8Q96L42 1107 aa8.71□□□□□ -1.01
VPS50-205ENST00000441602 ZNF644Q9H582 1327 aaPredicted RBP8.71□□□□□ -1.02
VPS50-205ENST00000441602 ADGRL2O95490 1459 aa8.71□□□□□ -1.02
VPS50-205ENST00000441602 PREX2Q70Z35 1606 aa8.71□□□□□ -1.02
VPS50-205ENST00000441602 ZNF316A6NFI3 1004 aaPredicted RBP8.71□□□□□ -1.02
VPS50-205ENST00000441602 CDC42BPAQ5VT25 1732 aa8.71□□□□□ -1.02
VPS50-205ENST00000441602 ARHGEF5Q12774 1597 aa8.7□□□□□ -1.02
VPS50-205ENST00000441602 ADGBQ8N7X0 1667 aa8.7□□□□□ -1.02
VPS50-205ENST00000441602 CCDC141Q6ZP82 1450 aa8.7□□□□□ -1.02
VPS50-205ENST00000441602 WDR7Q9Y4E6 1490 aa8.69□□□□□ -1.02
VPS50-205ENST00000441602 C9orf84Q5VXU9 1444 aa8.69□□□□□ -1.02
VPS50-205ENST00000441602 MYO5CQ9NQX4 1742 aa8.69□□□□□ -1.02
VPS50-205ENST00000441602 MAPKBP1O60336 1514 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 KIAA1107Q9UPP5 1409 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 TONSLQ96HA7 1378 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS50-205ENST00000441602 PLCH2O75038 1416 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 NCOA1Q15788 1441 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 ARAP3Q8WWN8 1544 aa8.68□□□□□ -1.02
VPS50-205ENST00000441602 NEUROD1Q13562 356 aa8.67□□□□□ -1.02
VPS50-205ENST00000441602 CROCC2H7BZ55 1655 aa8.67□□□□□ -1.02
VPS50-205ENST00000441602 TTC37Q6PGP7 1564 aa8.66□□□□□ -1.02
VPS50-205ENST00000441602 HNRNPMP52272 730 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS50-205ENST00000441602 ANKRD50Q9ULJ7 1429 aa8.66□□□□□ -1.02
VPS50-205ENST00000441602 MPHOSPH9Q99550 1183 aa8.65□□□□□ -1.02
VPS50-205ENST00000441602 SAMD9LQ8IVG5 1584 aa8.65□□□□□ -1.02
VPS50-205ENST00000441602 KIF15Q9NS87 1388 aa8.65□□□□□ -1.02
VPS50-205ENST00000441602 SLC4A1APQ9BWU0 796 aaKnown RBP8.65□□□□□ -1.03
VPS50-205ENST00000441602 ASXL2Q76L83 1435 aa8.64□□□□□ -1.03
VPS50-205ENST00000441602 CDC42BPBQ9Y5S2 1711 aa8.64□□□□□ -1.03
VPS50-205ENST00000441602 MAST1Q9Y2H9 1570 aa8.64□□□□□ -1.03
VPS50-205ENST00000441602 MBD5Q9P267 1494 aa8.64□□□□□ -1.03
VPS50-205ENST00000441602 SYCP2Q9BX26 1530 aa8.63□□□□□ -1.03
VPS50-205ENST00000441602 SIN3AQ96ST3 1273 aa8.63□□□□□ -1.03
VPS50-205ENST00000441602 DIEXFQ68CQ4 756 aaKnown RBP8.62□□□□□ -1.03
VPS50-205ENST00000441602 ABCA9Q8IUA7 1624 aa8.61□□□□□ -1.03
VPS50-205ENST00000441602 SPAG9O60271 1321 aaKnown RBP8.61□□□□□ -1.03
VPS50-205ENST00000441602 ABCC1P33527 1531 aa8.61□□□□□ -1.03
VPS50-205ENST00000441602 MYT1LQ9UL68 1186 aa8.6□□□□□ -1.03
VPS50-205ENST00000441602 CFAP74Q9C0B2 1584 aa8.6□□□□□ -1.03
VPS50-205ENST00000441602 NUP155O75694 1391 aa8.6□□□□□ -1.03
VPS50-205ENST00000441602 FANCAO15360 1455 aa8.6□□□□□ -1.03
VPS50-205ENST00000441602 RTEL1-TNFRSF6BF6WH68 1400 aa8.6□□□□□ -1.03
VPS50-205ENST00000441602 PPP1R15AO75807 674 aaPredicted RBP8.6□□□□□ -1.03
VPS50-205ENST00000441602 PLXNC1O60486 1568 aa8.59□□□□□ -1.03
VPS50-205ENST00000441602 DUOX2Q9NRD8 1548 aa8.59□□□□□ -1.03
VPS50-205ENST00000441602 KDM6BO15054 1643 aa8.59□□□□□ -1.03
VPS50-205ENST00000441602 KDM5DQ9BY66 1539 aa8.58□□□□□ -1.04
VPS50-205ENST00000441602 ERBINQ96RT1 1412 aa8.58□□□□□ -1.04
VPS50-205ENST00000441602 ADGRL1O94910 1474 aa8.58□□□□□ -1.04
VPS50-205ENST00000441602 CD109Q6YHK3 1445 aa8.57□□□□□ -1.04
VPS50-205ENST00000441602 PKD2Q13563 968 aa8.57□□□□□ -1.04
VPS50-205ENST00000441602 ANKRD30BQ9BXX2 1392 aa8.57□□□□□ -1.04
VPS50-205ENST00000441602 PZPP20742 1482 aa8.57□□□□□ -1.04
VPS50-205ENST00000441602 SCAPERQ9BY12 1400 aa8.56□□□□□ -1.04
VPS50-205ENST00000441602 CYB5RLQ6IPT4 315 aa8.56□□□□□ -1.04
VPS50-205ENST00000441602 KANK1Q14678 1352 aa8.56□□□□□ -1.04
VPS50-205ENST00000441602 TRAPPC8Q9Y2L5 1435 aa8.55□□□□□ -1.04
VPS50-205ENST00000441602 RPRD2Q5VT52 1461 aaKnown RBP8.55□□□□□ -1.04
VPS50-205ENST00000441602 NEO1Q92859 1461 aa8.54□□□□□ -1.04
VPS50-205ENST00000441602 ARHGEF12Q9NZN5 1544 aa8.54□□□□□ -1.04
VPS50-205ENST00000441602 RIMBP3CA6NJZ7 1639 aa8.54□□□□□ -1.04
VPS50-205ENST00000441602 RIMBP3BA6NNM3 1639 aa8.54□□□□□ -1.04
VPS50-205ENST00000441602 RIMBP3Q9UFD9 1639 aa8.54□□□□□ -1.04
VPS50-205ENST00000441602 ZNF518AQ6AHZ1 1483 aa8.53□□□□□ -1.04
VPS50-205ENST00000441602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS50-205ENST00000441602 UNC13BO14795 1591 aa8.53□□□□□ -1.04
VPS50-205ENST00000441602 ATP7AQ04656 1500 aa8.53□□□□□ -1.04
VPS50-205ENST00000441602 FOXD1Q16676 465 aa8.52□□□□□ -1.05
VPS50-205ENST00000441602 AFAP1Q8N556 730 aa8.52□□□□□ -1.05
VPS50-205ENST00000441602 DENND4BO75064 1496 aaPredicted RBP8.52□□□□□ -1.05
VPS50-205ENST00000441602 FAM135AQ9P2D6 1515 aa8.52□□□□□ -1.05
VPS50-205ENST00000441602 ZFYVE16Q7Z3T8 1539 aa8.52□□□□□ -1.05
VPS50-205ENST00000441602 L3MBTL2Q969R5 705 aa8.51□□□□□ -1.05
VPS50-205ENST00000441602 GLI2P10070 1586 aa8.51□□□□□ -1.05
VPS50-205ENST00000441602 INO80Q9ULG1 1556 aaPredicted RBP8.5□□□□□ -1.05
VPS50-205ENST00000441602 DHX29Q7Z478 1369 aaKnown RBP8.5□□□□□ -1.05
VPS50-205ENST00000441602 POGZQ7Z3K3 1410 aa8.5□□□□□ -1.05
VPS50-205ENST00000441602 CCDC144AA2RUR9 1427 aa8.5□□□□□ -1.05
VPS50-205ENST00000441602 IQGAP3Q86VI3 1631 aa8.5□□□□□ -1.05
VPS50-205ENST00000441602 EIF4G2P78344 907 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS50-205ENST00000441602 MAGI2Q86UL8 1455 aa8.49□□□□□ -1.05
VPS50-205ENST00000441602 TEX14Q8IWB6 1497 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms