RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ABCC5O15440 1437 aa15.7■□□□□ 0.1
USP4-205ENST00000431357 BCANQ96GW7 911 aa15.7■□□□□ 0.1
USP4-205ENST00000431357 ANKRD30BQ9BXX2 1392 aa15.7■□□□□ 0.1
USP4-205ENST00000431357 RAPGEF6Q8TEU7 1601 aa15.7■□□□□ 0.1
USP4-205ENST00000431357 RPRD2Q5VT52 1461 aaKnown RBP15.7■□□□□ 0.1
USP4-205ENST00000431357 L3MBTL2Q969R5 705 aa15.7■□□□□ 0.1
USP4-205ENST00000431357 NUP153P49790 1475 aaKnown RBP15.69■□□□□ 0.1
USP4-205ENST00000431357 CNTLNQ9NXG0 1405 aa15.69■□□□□ 0.1
USP4-205ENST00000431357 ZNF608Q9ULD9 1512 aaPredicted RBP15.68■□□□□ 0.1
USP4-205ENST00000431357 GRIN2AQ12879 1464 aa15.67■□□□□ 0.1
USP4-205ENST00000431357 NCOA1Q15788 1441 aa15.67■□□□□ 0.1
USP4-205ENST00000431357 CCDC7Q96M83 1385 aa15.64■□□□□ 0.1
USP4-205ENST00000431357 TROQ12816 1431 aaPredicted RBP15.64■□□□□ 0.09
USP4-205ENST00000431357 TEX14Q8IWB6 1497 aa15.64■□□□□ 0.09
USP4-205ENST00000431357 HNRNPUQ00839 825 aaKnown RBP eCLIP15.64■□□□□ 0.09
USP4-205ENST00000431357 ARID3CA6NKF2 412 aa15.64■□□□□ 0.09
USP4-205ENST00000431357 ANP32EQ9BTT0 268 aa15.63■□□□□ 0.09
USP4-205ENST00000431357 ITSN2Q9NZM3 1697 aa15.63■□□□□ 0.09
USP4-205ENST00000431357 SLC4A1APQ9BWU0 796 aaKnown RBP15.62■□□□□ 0.09
USP4-205ENST00000431357 MAGI1Q96QZ7 1491 aaPredicted RBP15.61■□□□□ 0.09
USP4-205ENST00000431357 EIF4G3O43432 1585 aaKnown RBP15.61■□□□□ 0.09
USP4-205ENST00000431357 FOXD1Q16676 465 aa15.61■□□□□ 0.09
USP4-205ENST00000431357 ERICH6BQ5W0A0 696 aa15.61■□□□□ 0.09
USP4-205ENST00000431357 ADGBQ8N7X0 1667 aa15.6■□□□□ 0.09
USP4-205ENST00000431357 ADCY10Q96PN6 1610 aa15.6■□□□□ 0.09
USP4-205ENST00000431357 ADGRL2O95490 1459 aa15.6■□□□□ 0.09
USP4-205ENST00000431357 CAMSAP2Q08AD1 1489 aa15.6■□□□□ 0.09
USP4-205ENST00000431357 ZNF644Q9H582 1327 aaPredicted RBP15.59■□□□□ 0.09
USP4-205ENST00000431357 SPATA31E1Q6ZUB1 1445 aa15.59■□□□□ 0.09
USP4-205ENST00000431357 NBPF8Q3BBV2 869 aa15.59■□□□□ 0.09
USP4-205ENST00000431357 POLR1AO95602 1720 aaPredicted RBP15.58■□□□□ 0.09
USP4-205ENST00000431357 PRKRIP1Q9H875 184 aaPredicted RBP15.58■□□□□ 0.08
USP4-205ENST00000431357 CFDP1Q9UEE9 299 aaPredicted RBP15.58■□□□□ 0.08
USP4-205ENST00000431357 PZPP20742 1482 aa15.57■□□□□ 0.08
USP4-205ENST00000431357 GPATCH8Q9UKJ3 1502 aaKnown RBP15.57■□□□□ 0.08
USP4-205ENST00000431357 PRG4Q92954 1404 aaPredicted RBP15.57■□□□□ 0.08
USP4-205ENST00000431357 CARMIL2Q6F5E8 1435 aa15.56■□□□□ 0.08
USP4-205ENST00000431357 SYNJ2O15056 1496 aa15.56■□□□□ 0.08
USP4-205ENST00000431357 C11orf95C9JLR9 678 aaPredicted RBP15.56■□□□□ 0.08
USP4-205ENST00000431357 KIAA1107Q9UPP5 1409 aa15.55■□□□□ 0.08
USP4-205ENST00000431357 CROCC2H7BZ55 1655 aa15.54■□□□□ 0.08
USP4-205ENST00000431357 ANKRD30AQ9BXX3 1397 aa15.54■□□□□ 0.08
USP4-205ENST00000431357 CHMP7Q8WUX9 453 aaPredicted RBP15.53■□□□□ 0.08
USP4-205ENST00000431357 CEP170Q5SW79 1584 aa15.53■□□□□ 0.08
USP4-205ENST00000431357 MBD5Q9P267 1494 aa15.53■□□□□ 0.08
USP4-205ENST00000431357 KIF7Q2M1P5 1343 aa15.53■□□□□ 0.08
USP4-205ENST00000431357 RBM19Q9Y4C8 960 aaKnown RBP15.52■□□□□ 0.08
USP4-205ENST00000431357 PLB1Q6P1J6 1458 aa15.52■□□□□ 0.07
USP4-205ENST00000431357 ARID4BQ4LE39 1312 aaPredicted RBP15.51■□□□□ 0.07
USP4-205ENST00000431357 MRS2Q9HD23 443 aa15.51■□□□□ 0.07
USP4-205ENST00000431357 ZBED9Q6R2W3 1325 aa15.51■□□□□ 0.07
USP4-205ENST00000431357 NUP160Q12769 1436 aa15.5■□□□□ 0.07
USP4-205ENST00000431357 KIF14Q15058 1648 aa15.5■□□□□ 0.07
USP4-205ENST00000431357 SHANK2Q9UPX8 1470 aa15.5■□□□□ 0.07
USP4-205ENST00000431357 CCDC184Q52MB2 194 aa15.49■□□□□ 0.07
USP4-205ENST00000431357 JPH4Q96JJ6 628 aa15.47■□□□□ 0.07
USP4-205ENST00000431357 ANKRD50Q9ULJ7 1429 aa15.47■□□□□ 0.07
USP4-205ENST00000431357 ERCC6Q03468 1493 aa15.47■□□□□ 0.07
USP4-205ENST00000431357 PLEKHD1A6NEE1 506 aa15.47■□□□□ 0.07
USP4-205ENST00000431357 PKD2Q13563 968 aa15.46■□□□□ 0.07
USP4-205ENST00000431357 FAM9BQ8IZU0 186 aa15.46■□□□□ 0.07
USP4-205ENST00000431357 PPP4R2Q9NY27 417 aa15.46■□□□□ 0.07
USP4-205ENST00000431357 ZNF777Q9ULD5 760 aaPredicted RBP15.46■□□□□ 0.07
USP4-205ENST00000431357 UHRF1BP1Q6BDS2 1440 aa15.46■□□□□ 0.06
USP4-205ENST00000431357 ABCA8O94911 1581 aa15.46■□□□□ 0.06
USP4-205ENST00000431357 ABCC10Q5T3U5 1492 aa15.45■□□□□ 0.06
USP4-205ENST00000431357 USP47Q96K76 1375 aa15.44■□□□□ 0.06
USP4-205ENST00000431357 KDM5DQ9BY66 1539 aa15.44■□□□□ 0.06
USP4-205ENST00000431357 ROCK2O75116 1388 aaKnown RBP15.43■□□□□ 0.06
USP4-205ENST00000431357 ARHGEF12Q9NZN5 1544 aa15.43■□□□□ 0.06
USP4-205ENST00000431357 CDC42BPAQ5VT25 1732 aa15.42■□□□□ 0.06
USP4-205ENST00000431357 C9orf84Q5VXU9 1444 aa15.42■□□□□ 0.06
USP4-205ENST00000431357 DHX29Q7Z478 1369 aaKnown RBP15.42■□□□□ 0.06
USP4-205ENST00000431357 KDM5CP41229 1560 aa15.42■□□□□ 0.06
USP4-205ENST00000431357 RALGAPBQ86X10 1494 aa15.42■□□□□ 0.06
USP4-205ENST00000431357 ATP10BO94823 1461 aa15.41■□□□□ 0.06
USP4-205ENST00000431357 TSPY4P0CV99 314 aa15.41■□□□□ 0.06
USP4-205ENST00000431357 TSPY10P0CW01 314 aa15.41■□□□□ 0.06
USP4-205ENST00000431357 FBLN2P98095 1184 aa15.4■□□□□ 0.06
USP4-205ENST00000431357 NUP155O75694 1391 aa15.4■□□□□ 0.06
USP4-205ENST00000431357 ARHGEF5Q12774 1597 aa15.4■□□□□ 0.06
USP4-205ENST00000431357 IRX6P78412 446 aaPredicted RBP15.4■□□□□ 0.06
USP4-205ENST00000431357 BCORL1Q5H9F3 1711 aa15.39■□□□□ 0.05
USP4-205ENST00000431357 FANCIQ9NVI1 1328 aa15.38■□□□□ 0.05
USP4-205ENST00000431357 PTPRGP23470 1445 aa15.38■□□□□ 0.05
USP4-205ENST00000431357 SMG6Q86US8 1419 aaKnown RBP15.37■□□□□ 0.05
USP4-205ENST00000431357 RSPH4AQ5TD94 716 aa15.36■□□□□ 0.05
USP4-205ENST00000431357 ZNF326Q5BKZ1 582 aaKnown RBP15.35■□□□□ 0.05
USP4-205ENST00000431357 KTN1Q86UP2 1357 aaKnown RBP15.34■□□□□ 0.05
USP4-205ENST00000431357 KIF15Q9NS87 1388 aa15.34■□□□□ 0.05
USP4-205ENST00000431357 CARD11Q9BXL7 1154 aa15.34■□□□□ 0.05
USP4-205ENST00000431357 CCDC141Q6ZP82 1450 aa15.32■□□□□ 0.04
USP4-205ENST00000431357 NUDCQ9Y266 331 aa15.31■□□□□ 0.04
USP4-205ENST00000431357 POLR3GLQ9BT43 218 aa15.31■□□□□ 0.04
USP4-205ENST00000431357 RNF123Q5XPI4 1314 aa15.29■□□□□ 0.04
USP4-205ENST00000431357 HNRNPMP52272 730 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP4-205ENST00000431357 PREX2Q70Z35 1606 aa15.29■□□□□ 0.04
USP4-205ENST00000431357 RALBP1Q15311 655 aa15.28■□□□□ 0.04
USP4-205ENST00000431357 PNISRQ8TF01 805 aaKnown RBP15.28■□□□□ 0.04
USP4-205ENST00000431357 TMC1Q8TDI8 760 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms