RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 TROQ12816 1431 aaPredicted RBP24.47■■□□□ 1.51
MSH5-208ENST00000429846 CLIP1P30622 1438 aa24.46■■□□□ 1.51
MSH5-208ENST00000429846 SCAPERQ9BY12 1400 aa24.45■■□□□ 1.51
MSH5-208ENST00000429846 RIMS1Q86UR5 1692 aaKnown RBP24.44■■□□□ 1.5
MSH5-208ENST00000429846 YEATS2Q9ULM3 1422 aa24.43■■□□□ 1.5
MSH5-208ENST00000429846 CCDC18Q5T9S5 1454 aa24.42■■□□□ 1.5
MSH5-208ENST00000429846 EFCAB2Q5VUJ9 269 aa24.41■■□□□ 1.5
MSH5-208ENST00000429846 PCF11O94913 1555 aaKnown RBP24.41■■□□□ 1.5
MSH5-208ENST00000429846 SIGLEC1Q9BZZ2 1709 aa24.41■■□□□ 1.5
MSH5-208ENST00000429846 CASKIN1Q8WXD9 1431 aa24.39■■□□□ 1.5
MSH5-208ENST00000429846 ARHGAP5Q13017 1502 aa24.39■■□□□ 1.49
MSH5-208ENST00000429846 ZNF518AQ6AHZ1 1483 aa24.38■■□□□ 1.49
MSH5-208ENST00000429846 ILDR1Q86SU0 546 aaPredicted RBP24.36■■□□□ 1.49
MSH5-208ENST00000429846 KDM5CP41229 1560 aa24.35■■□□□ 1.49
MSH5-208ENST00000429846 FER1L4A9Z1Z3 1794 aa24.34■■□□□ 1.49
MSH5-208ENST00000429846 ATP10AO60312 1499 aa24.34■■□□□ 1.49
MSH5-208ENST00000429846 CDC42BPBQ9Y5S2 1711 aa24.34■■□□□ 1.49
MSH5-208ENST00000429846 PREX2Q70Z35 1606 aa24.34■■□□□ 1.49
MSH5-208ENST00000429846 C9orf84Q5VXU9 1444 aa24.34■■□□□ 1.49
MSH5-208ENST00000429846 LMTK3Q96Q04 1460 aa24.33■■□□□ 1.49
MSH5-208ENST00000429846 FYCO1Q9BQS8 1478 aa24.33■■□□□ 1.49
MSH5-208ENST00000429846 ARHGEF12Q9NZN5 1544 aa24.28■■□□□ 1.48
MSH5-208ENST00000429846 ABCC1P33527 1531 aa24.26■■□□□ 1.47
MSH5-208ENST00000429846 REREQ9P2R6 1566 aa24.25■■□□□ 1.47
MSH5-208ENST00000429846 ITSN2Q9NZM3 1697 aa24.24■■□□□ 1.47
MSH5-208ENST00000429846 CDC42BPAQ5VT25 1732 aa24.24■■□□□ 1.47
MSH5-208ENST00000429846 DIP2CQ9Y2E4 1556 aa24.24■■□□□ 1.47
MSH5-208ENST00000429846 MLH3Q9UHC1 1453 aa24.23■■□□□ 1.47
MSH5-208ENST00000429846 MLECQ14165 292 aa24.22■■□□□ 1.47
MSH5-208ENST00000429846 AFAP1Q8N556 730 aa24.22■■□□□ 1.47
MSH5-208ENST00000429846 ABCA6Q8N139 1617 aa24.2■■□□□ 1.46
MSH5-208ENST00000429846 PREX1Q8TCU6 1659 aa24.15■■□□□ 1.46
MSH5-208ENST00000429846 MYT1LQ9UL68 1186 aa24.15■■□□□ 1.46
MSH5-208ENST00000429846 TRAPPC8Q9Y2L5 1435 aa24.15■■□□□ 1.46
MSH5-208ENST00000429846 AGLP35573 1532 aa24.15■■□□□ 1.46
MSH5-208ENST00000429846 PLPPR3Q6T4P5 718 aa24.13■■□□□ 1.45
MSH5-208ENST00000429846 KIDINS220Q9ULH0 1771 aa24.13■■□□□ 1.45
MSH5-208ENST00000429846 SAMD9LQ8IVG5 1584 aa24.12■■□□□ 1.45
MSH5-208ENST00000429846 GPATCH8Q9UKJ3 1502 aaKnown RBP24.1■■□□□ 1.45
MSH5-208ENST00000429846 SYCP2Q9BX26 1530 aa24.09■■□□□ 1.45
MSH5-208ENST00000429846 HSPA2P54652 639 aa24.08■■□□□ 1.45
MSH5-208ENST00000429846 FBXO41Q8TF61 875 aa24.08■■□□□ 1.45
MSH5-208ENST00000429846 PLEKHH2Q8IVE3 1493 aa24.07■■□□□ 1.44
MSH5-208ENST00000429846 SETD1BQ9UPS6 1966 aaKnown RBP24.06■■□□□ 1.44
MSH5-208ENST00000429846 MTUS2Q5JR59 1369 aa24.04■■□□□ 1.44
MSH5-208ENST00000429846 KIAA1107Q9UPP5 1409 aa24.04■■□□□ 1.44
MSH5-208ENST00000429846 C3P01024 1663 aa24.04■■□□□ 1.44
MSH5-208ENST00000429846 CCNB3Q8WWL7 1395 aa24.03■■□□□ 1.44
MSH5-208ENST00000429846 EHBP1L1Q8N3D4 1523 aa24.02■■□□□ 1.44
MSH5-208ENST00000429846 ZNF777Q9ULD5 760 aaPredicted RBP24.02■■□□□ 1.44
MSH5-208ENST00000429846 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
MSH5-208ENST00000429846 CEBPAP49715 358 aaPredicted RBP24.01■■□□□ 1.43
MSH5-208ENST00000429846 CNTLNQ9NXG0 1405 aa24.01■■□□□ 1.43
MSH5-208ENST00000429846 ATP7AQ04656 1500 aa24■■□□□ 1.43
MSH5-208ENST00000429846 INO80Q9ULG1 1556 aaPredicted RBP24■■□□□ 1.43
MSH5-208ENST00000429846 CFDP1Q9UEE9 299 aaPredicted RBP24■■□□□ 1.43
MSH5-208ENST00000429846 ESF1Q9H501 851 aaKnown RBP23.99■■□□□ 1.43
MSH5-208ENST00000429846 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
MSH5-208ENST00000429846 SPAG9O60271 1321 aaKnown RBP23.98■■□□□ 1.43
MSH5-208ENST00000429846 TIAM1Q13009 1591 aa23.98■■□□□ 1.43
MSH5-208ENST00000429846 MROH2AA6NES4 1674 aa23.97■■□□□ 1.43
MSH5-208ENST00000429846 PLXNC1O60486 1568 aa23.95■■□□□ 1.43
MSH5-208ENST00000429846 SUPT6HQ7KZ85 1726 aaKnown RBP23.94■■□□□ 1.42
MSH5-208ENST00000429846 HNRNPMP52272 730 aaKnown RBP eCLIP23.94■■□□□ 1.42
MSH5-208ENST00000429846 STRCQ7RTU9 1775 aa23.93■■□□□ 1.42
MSH5-208ENST00000429846 ADGBQ8N7X0 1667 aa23.91■■□□□ 1.42
MSH5-208ENST00000429846 A2MP01023 1474 aa23.9■■□□□ 1.42
MSH5-208ENST00000429846 DMRT2Q9Y5R5 561 aa23.89■■□□□ 1.41
MSH5-208ENST00000429846 NPATQ14207 1427 aa23.88■■□□□ 1.41
MSH5-208ENST00000429846 MBD5Q9P267 1494 aa23.86■■□□□ 1.41
MSH5-208ENST00000429846 CLTCQ00610 1675 aaKnown RBP23.84■■□□□ 1.41
MSH5-208ENST00000429846 RTEL1-TNFRSF6BF6WH68 1400 aa23.84■■□□□ 1.41
MSH5-208ENST00000429846 CERKQ8TCT0 537 aa23.83■■□□□ 1.41
MSH5-208ENST00000429846 NCOA2Q15596 1464 aa23.81■■□□□ 1.4
MSH5-208ENST00000429846 ZMYM3Q14202 1370 aa23.81■■□□□ 1.4
MSH5-208ENST00000429846 PTPRTO14522 1441 aa23.81■■□□□ 1.4
MSH5-208ENST00000429846 ZNF644Q9H582 1327 aaPredicted RBP23.81■■□□□ 1.4
MSH5-208ENST00000429846 PPP6R1Q9UPN7 881 aa23.78■■□□□ 1.4
MSH5-208ENST00000429846 CAMSAP2Q08AD1 1489 aa23.78■■□□□ 1.4
MSH5-208ENST00000429846 CCDC141Q6ZP82 1450 aa23.78■■□□□ 1.4
MSH5-208ENST00000429846 ZNF142P52746 1687 aaPredicted RBP23.78■■□□□ 1.4
MSH5-208ENST00000429846 NCOA1Q15788 1441 aa23.77■■□□□ 1.4
MSH5-208ENST00000429846 VPS8Q8N3P4 1428 aa23.77■■□□□ 1.4
MSH5-208ENST00000429846 MYO3AQ8NEV4 1616 aa23.77■■□□□ 1.4
MSH5-208ENST00000429846 RSPH4AQ5TD94 716 aa23.74■■□□□ 1.39
MSH5-208ENST00000429846 FAM135AQ9P2D6 1515 aa23.74■■□□□ 1.39
MSH5-208ENST00000429846 CAMSAP1Q5T5Y3 1602 aa23.73■■□□□ 1.39
MSH5-208ENST00000429846 GGT6Q6P531 493 aa23.73■■□□□ 1.39
MSH5-208ENST00000429846 DHX29Q7Z478 1369 aaKnown RBP23.73■■□□□ 1.39
MSH5-208ENST00000429846 PTPRKQ15262 1439 aa23.73■■□□□ 1.39
MSH5-208ENST00000429846 ARHGEF5Q12774 1597 aa23.73■■□□□ 1.39
MSH5-208ENST00000429846 CEP170BQ9Y4F5 1589 aaPredicted RBP23.7■■□□□ 1.38
MSH5-208ENST00000429846 LRRC9Q6ZRR7 1453 aa23.7■■□□□ 1.38
MSH5-208ENST00000429846 MAP3K1Q13233 1512 aa23.69■■□□□ 1.38
MSH5-208ENST00000429846 PLA2R1Q13018 1463 aa23.68■■□□□ 1.38
MSH5-208ENST00000429846 KDM5DQ9BY66 1539 aa23.66■■□□□ 1.38
MSH5-208ENST00000429846 LTBP4Q8N2S1 1624 aa23.65■■□□□ 1.38
MSH5-208ENST00000429846 IQSEC2Q5JU85 1478 aa23.64■■□□□ 1.38
MSH5-208ENST00000429846 MAST1Q9Y2H9 1570 aa23.62■■□□□ 1.37
MSH5-208ENST00000429846 TCOF1Q13428 1488 aaKnown RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms