RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SIGLEC1Q9BZZ2 1709 aa23.81■■□□□ 1.4
SDC1-204ENST00000429035 CDK11AQ9UQ88 783 aaPredicted RBP23.81■■□□□ 1.4
SDC1-204ENST00000429035 POGZQ7Z3K3 1410 aa23.81■■□□□ 1.4
SDC1-204ENST00000429035 SCAPERQ9BY12 1400 aa23.81■■□□□ 1.4
SDC1-204ENST00000429035 CLIP1P30622 1438 aa23.8■■□□□ 1.4
SDC1-204ENST00000429035 ILDR1Q86SU0 546 aaPredicted RBP23.8■■□□□ 1.4
SDC1-204ENST00000429035 TROQ12816 1431 aaPredicted RBP23.79■■□□□ 1.4
SDC1-204ENST00000429035 ARHGAP5Q13017 1502 aa23.79■■□□□ 1.4
SDC1-204ENST00000429035 PLPPR3Q6T4P5 718 aa23.78■■□□□ 1.4
SDC1-204ENST00000429035 FER1L4A9Z1Z3 1794 aa23.77■■□□□ 1.4
SDC1-204ENST00000429035 MAGI2Q86UL8 1455 aa23.75■■□□□ 1.39
SDC1-204ENST00000429035 MLECQ14165 292 aa23.73■■□□□ 1.39
SDC1-204ENST00000429035 EFCAB2Q5VUJ9 269 aa23.73■■□□□ 1.39
SDC1-204ENST00000429035 CCDC18Q5T9S5 1454 aa23.72■■□□□ 1.39
SDC1-204ENST00000429035 CDC42BPBQ9Y5S2 1711 aa23.71■■□□□ 1.39
SDC1-204ENST00000429035 PREX2Q70Z35 1606 aa23.7■■□□□ 1.38
SDC1-204ENST00000429035 CASKIN1Q8WXD9 1431 aa23.69■■□□□ 1.38
SDC1-204ENST00000429035 MYT1LQ9UL68 1186 aa23.68■■□□□ 1.38
SDC1-204ENST00000429035 ZNF518AQ6AHZ1 1483 aa23.68■■□□□ 1.38
SDC1-204ENST00000429035 LMTK3Q96Q04 1460 aa23.68■■□□□ 1.38
SDC1-204ENST00000429035 C9orf84Q5VXU9 1444 aa23.67■■□□□ 1.38
SDC1-204ENST00000429035 ATP10AO60312 1499 aa23.65■■□□□ 1.38
SDC1-204ENST00000429035 FYCO1Q9BQS8 1478 aa23.64■■□□□ 1.38
SDC1-204ENST00000429035 KDM5CP41229 1560 aa23.64■■□□□ 1.37
SDC1-204ENST00000429035 ITSN2Q9NZM3 1697 aa23.64■■□□□ 1.37
SDC1-204ENST00000429035 CDC42BPAQ5VT25 1732 aa23.63■■□□□ 1.37
SDC1-204ENST00000429035 ABCC1P33527 1531 aa23.62■■□□□ 1.37
SDC1-204ENST00000429035 DIP2CQ9Y2E4 1556 aa23.61■■□□□ 1.37
SDC1-204ENST00000429035 ARHGEF12Q9NZN5 1544 aa23.59■■□□□ 1.37
SDC1-204ENST00000429035 ABCA6Q8N139 1617 aa23.59■■□□□ 1.37
SDC1-204ENST00000429035 AFAP1Q8N556 730 aa23.58■■□□□ 1.37
SDC1-204ENST00000429035 HSPA2P54652 639 aa23.56■■□□□ 1.36
SDC1-204ENST00000429035 TRAPPC8Q9Y2L5 1435 aa23.53■■□□□ 1.36
SDC1-204ENST00000429035 PREX1Q8TCU6 1659 aa23.53■■□□□ 1.36
SDC1-204ENST00000429035 REREQ9P2R6 1566 aa23.5■■□□□ 1.35
SDC1-204ENST00000429035 ZNF777Q9ULD5 760 aaPredicted RBP23.5■■□□□ 1.35
SDC1-204ENST00000429035 MLH3Q9UHC1 1453 aa23.49■■□□□ 1.35
SDC1-204ENST00000429035 SAMD9LQ8IVG5 1584 aa23.49■■□□□ 1.35
SDC1-204ENST00000429035 KIDINS220Q9ULH0 1771 aa23.49■■□□□ 1.35
SDC1-204ENST00000429035 SYCP2Q9BX26 1530 aa23.49■■□□□ 1.35
SDC1-204ENST00000429035 CEBPAP49715 358 aaPredicted RBP23.46■■□□□ 1.35
SDC1-204ENST00000429035 C3P01024 1663 aa23.44■■□□□ 1.34
SDC1-204ENST00000429035 FBXO41Q8TF61 875 aa23.43■■□□□ 1.34
SDC1-204ENST00000429035 GPATCH8Q9UKJ3 1502 aaKnown RBP23.43■■□□□ 1.34
SDC1-204ENST00000429035 MTUS2Q5JR59 1369 aa23.42■■□□□ 1.34
SDC1-204ENST00000429035 AGLP35573 1532 aa23.41■■□□□ 1.34
SDC1-204ENST00000429035 SUPT6HQ7KZ85 1726 aaKnown RBP23.4■■□□□ 1.34
SDC1-204ENST00000429035 ESF1Q9H501 851 aaKnown RBP23.4■■□□□ 1.34
SDC1-204ENST00000429035 CCNB3Q8WWL7 1395 aa23.4■■□□□ 1.34
SDC1-204ENST00000429035 UHRF1BP1Q6BDS2 1440 aa23.39■■□□□ 1.33
SDC1-204ENST00000429035 EHBP1L1Q8N3D4 1523 aa23.38■■□□□ 1.33
SDC1-204ENST00000429035 CEP162Q5TB80 1403 aa23.36■■□□□ 1.33
SDC1-204ENST00000429035 ATP7AQ04656 1500 aa23.36■■□□□ 1.33
SDC1-204ENST00000429035 SETD1BQ9UPS6 1966 aaKnown RBP23.36■■□□□ 1.33
SDC1-204ENST00000429035 TIAM1Q13009 1591 aa23.35■■□□□ 1.33
SDC1-204ENST00000429035 SPAG9O60271 1321 aaKnown RBP23.35■■□□□ 1.33
SDC1-204ENST00000429035 HNRNPMP52272 730 aaKnown RBP eCLIP23.35■■□□□ 1.33
SDC1-204ENST00000429035 CFDP1Q9UEE9 299 aaPredicted RBP23.35■■□□□ 1.33
SDC1-204ENST00000429035 PLEKHH2Q8IVE3 1493 aa23.35■■□□□ 1.33
SDC1-204ENST00000429035 INO80Q9ULG1 1556 aaPredicted RBP23.35■■□□□ 1.33
SDC1-204ENST00000429035 STRCQ7RTU9 1775 aa23.31■■□□□ 1.32
SDC1-204ENST00000429035 MROH2AA6NES4 1674 aa23.29■■□□□ 1.32
SDC1-204ENST00000429035 CNTLNQ9NXG0 1405 aa23.29■■□□□ 1.32
SDC1-204ENST00000429035 CLTCQ00610 1675 aaKnown RBP23.28■■□□□ 1.32
SDC1-204ENST00000429035 KIAA1107Q9UPP5 1409 aa23.28■■□□□ 1.32
SDC1-204ENST00000429035 ADGBQ8N7X0 1667 aa23.27■■□□□ 1.32
SDC1-204ENST00000429035 PLXNC1O60486 1568 aa23.27■■□□□ 1.32
SDC1-204ENST00000429035 A2MP01023 1474 aa23.26■■□□□ 1.31
SDC1-204ENST00000429035 ZNF644Q9H582 1327 aaPredicted RBP23.22■■□□□ 1.31
SDC1-204ENST00000429035 CERKQ8TCT0 537 aa23.21■■□□□ 1.31
SDC1-204ENST00000429035 NCOA2Q15596 1464 aa23.18■■□□□ 1.3
SDC1-204ENST00000429035 GGT6Q6P531 493 aa23.17■■□□□ 1.3
SDC1-204ENST00000429035 DMRT2Q9Y5R5 561 aa23.17■■□□□ 1.3
SDC1-204ENST00000429035 MYO3AQ8NEV4 1616 aa23.17■■□□□ 1.3
SDC1-204ENST00000429035 CAMSAP2Q08AD1 1489 aa23.17■■□□□ 1.3
SDC1-204ENST00000429035 MBD5Q9P267 1494 aa23.16■■□□□ 1.3
SDC1-204ENST00000429035 NPATQ14207 1427 aa23.16■■□□□ 1.3
SDC1-204ENST00000429035 ZMYM3Q14202 1370 aa23.15■■□□□ 1.3
SDC1-204ENST00000429035 CAMSAP1Q5T5Y3 1602 aa23.15■■□□□ 1.3
SDC1-204ENST00000429035 CCDC141Q6ZP82 1450 aa23.14■■□□□ 1.29
SDC1-204ENST00000429035 ZNF142P52746 1687 aaPredicted RBP23.13■■□□□ 1.29
SDC1-204ENST00000429035 NCOA1Q15788 1441 aa23.12■■□□□ 1.29
SDC1-204ENST00000429035 PTPRTO14522 1441 aa23.1■■□□□ 1.29
SDC1-204ENST00000429035 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
SDC1-204ENST00000429035 RTEL1-TNFRSF6BF6WH68 1400 aa23.09■■□□□ 1.29
SDC1-204ENST00000429035 CEP170BQ9Y4F5 1589 aaPredicted RBP23.09■■□□□ 1.29
SDC1-204ENST00000429035 LOC105371045A0A1W2PR82 267 aa23.08■■□□□ 1.29
SDC1-204ENST00000429035 PTPRKQ15262 1439 aa23.07■■□□□ 1.28
SDC1-204ENST00000429035 LRRC9Q6ZRR7 1453 aa23.05■■□□□ 1.28
SDC1-204ENST00000429035 ARHGEF5Q12774 1597 aa23.04■■□□□ 1.28
SDC1-204ENST00000429035 DHX29Q7Z478 1369 aaKnown RBP23.03■■□□□ 1.28
SDC1-204ENST00000429035 KDM5DQ9BY66 1539 aa23.02■■□□□ 1.28
SDC1-204ENST00000429035 KIF3BO15066 747 aa23.01■■□□□ 1.27
SDC1-204ENST00000429035 NCKAP5LQ9HCH0 1330 aa23■■□□□ 1.27
SDC1-204ENST00000429035 LTBP4Q8N2S1 1624 aa23■■□□□ 1.27
SDC1-204ENST00000429035 PPP6R1Q9UPN7 881 aa22.98■■□□□ 1.27
SDC1-204ENST00000429035 PLA2R1Q13018 1463 aa22.98■■□□□ 1.27
SDC1-204ENST00000429035 TSPY4P0CV99 314 aa22.96■■□□□ 1.27
SDC1-204ENST00000429035 TSPY10P0CW01 314 aa22.96■■□□□ 1.27
SDC1-204ENST00000429035 RSPH4AQ5TD94 716 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms