RNA–Protein interactions for RNA: ENST00000423214.1

COL18A1-205, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 5

Gene COL18A1, Length 839 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-205ENST00000423214 PCF11O94913 1555 aaKnown RBP26.56■■□□□ 1.84
COL18A1-205ENST00000423214 CDK11AQ9UQ88 783 aaPredicted RBP26.56■■□□□ 1.84
COL18A1-205ENST00000423214 CLIP1P30622 1438 aa26.56■■□□□ 1.84
COL18A1-205ENST00000423214 POGZQ7Z3K3 1410 aa26.56■■□□□ 1.84
COL18A1-205ENST00000423214 MAGI2Q86UL8 1455 aa26.55■■□□□ 1.84
COL18A1-205ENST00000423214 TROQ12816 1431 aaPredicted RBP26.53■■□□□ 1.84
COL18A1-205ENST00000423214 SCAPERQ9BY12 1400 aa26.52■■□□□ 1.84
COL18A1-205ENST00000423214 YEATS2Q9ULM3 1422 aa26.52■■□□□ 1.84
COL18A1-205ENST00000423214 ARHGAP5Q13017 1502 aa26.51■■□□□ 1.83
COL18A1-205ENST00000423214 CDC42BPBQ9Y5S2 1711 aa26.5■■□□□ 1.83
COL18A1-205ENST00000423214 CCDC18Q5T9S5 1454 aa26.49■■□□□ 1.83
COL18A1-205ENST00000423214 PREX2Q70Z35 1606 aa26.48■■□□□ 1.83
COL18A1-205ENST00000423214 ILDR1Q86SU0 546 aaPredicted RBP26.48■■□□□ 1.83
COL18A1-205ENST00000423214 EFCAB2Q5VUJ9 269 aa26.45■■□□□ 1.82
COL18A1-205ENST00000423214 ZNF518AQ6AHZ1 1483 aa26.44■■□□□ 1.82
COL18A1-205ENST00000423214 KDM5CP41229 1560 aa26.42■■□□□ 1.82
COL18A1-205ENST00000423214 CASKIN1Q8WXD9 1431 aa26.42■■□□□ 1.82
COL18A1-205ENST00000423214 LMTK3Q96Q04 1460 aa26.42■■□□□ 1.82
COL18A1-205ENST00000423214 C9orf84Q5VXU9 1444 aa26.4■■□□□ 1.82
COL18A1-205ENST00000423214 CDC42BPAQ5VT25 1732 aa26.4■■□□□ 1.82
COL18A1-205ENST00000423214 FYCO1Q9BQS8 1478 aa26.4■■□□□ 1.82
COL18A1-205ENST00000423214 ITSN2Q9NZM3 1697 aa26.4■■□□□ 1.82
COL18A1-205ENST00000423214 ATP10AO60312 1499 aa26.39■■□□□ 1.82
COL18A1-205ENST00000423214 ABCC1P33527 1531 aa26.35■■□□□ 1.81
COL18A1-205ENST00000423214 MLECQ14165 292 aa26.35■■□□□ 1.81
COL18A1-205ENST00000423214 ARHGEF12Q9NZN5 1544 aa26.34■■□□□ 1.81
COL18A1-205ENST00000423214 DIP2CQ9Y2E4 1556 aa26.34■■□□□ 1.81
COL18A1-205ENST00000423214 ABCA6Q8N139 1617 aa26.33■■□□□ 1.81
COL18A1-205ENST00000423214 PLPPR3Q6T4P5 718 aa26.33■■□□□ 1.81
COL18A1-205ENST00000423214 PREX1Q8TCU6 1659 aa26.31■■□□□ 1.8
COL18A1-205ENST00000423214 REREQ9P2R6 1566 aa26.29■■□□□ 1.8
COL18A1-205ENST00000423214 MYT1LQ9UL68 1186 aa26.29■■□□□ 1.8
COL18A1-205ENST00000423214 AFAP1Q8N556 730 aa26.24■■□□□ 1.79
COL18A1-205ENST00000423214 KIDINS220Q9ULH0 1771 aa26.24■■□□□ 1.79
COL18A1-205ENST00000423214 MLH3Q9UHC1 1453 aa26.23■■□□□ 1.79
COL18A1-205ENST00000423214 SAMD9LQ8IVG5 1584 aa26.21■■□□□ 1.79
COL18A1-205ENST00000423214 TRAPPC8Q9Y2L5 1435 aa26.21■■□□□ 1.79
COL18A1-205ENST00000423214 SYCP2Q9BX26 1530 aa26.19■■□□□ 1.78
COL18A1-205ENST00000423214 C3P01024 1663 aa26.19■■□□□ 1.78
COL18A1-205ENST00000423214 HSPA2P54652 639 aa26.17■■□□□ 1.78
COL18A1-205ENST00000423214 SETD1BQ9UPS6 1966 aaKnown RBP26.16■■□□□ 1.78
COL18A1-205ENST00000423214 AGLP35573 1532 aa26.16■■□□□ 1.78
COL18A1-205ENST00000423214 FBXO41Q8TF61 875 aa26.13■■□□□ 1.77
COL18A1-205ENST00000423214 GPATCH8Q9UKJ3 1502 aaKnown RBP26.12■■□□□ 1.77
COL18A1-205ENST00000423214 SUPT6HQ7KZ85 1726 aaKnown RBP26.11■■□□□ 1.77
COL18A1-205ENST00000423214 ZNF777Q9ULD5 760 aaPredicted RBP26.1■■□□□ 1.77
COL18A1-205ENST00000423214 EHBP1L1Q8N3D4 1523 aa26.09■■□□□ 1.77
COL18A1-205ENST00000423214 MTUS2Q5JR59 1369 aa26.08■■□□□ 1.77
COL18A1-205ENST00000423214 INO80Q9ULG1 1556 aaPredicted RBP26.08■■□□□ 1.77
COL18A1-205ENST00000423214 UHRF1BP1Q6BDS2 1440 aa26.08■■□□□ 1.77
COL18A1-205ENST00000423214 PLEKHH2Q8IVE3 1493 aa26.08■■□□□ 1.77
COL18A1-205ENST00000423214 ATP7AQ04656 1500 aa26.08■■□□□ 1.77
COL18A1-205ENST00000423214 MROH2AA6NES4 1674 aa26.07■■□□□ 1.76
COL18A1-205ENST00000423214 CEBPAP49715 358 aaPredicted RBP26.07■■□□□ 1.76
COL18A1-205ENST00000423214 CCNB3Q8WWL7 1395 aa26.07■■□□□ 1.76
COL18A1-205ENST00000423214 ESF1Q9H501 851 aaKnown RBP26.06■■□□□ 1.76
COL18A1-205ENST00000423214 TIAM1Q13009 1591 aa26.06■■□□□ 1.76
COL18A1-205ENST00000423214 STRCQ7RTU9 1775 aa26.05■■□□□ 1.76
COL18A1-205ENST00000423214 ADGBQ8N7X0 1667 aa26.03■■□□□ 1.76
COL18A1-205ENST00000423214 CEP162Q5TB80 1403 aa26.02■■□□□ 1.76
COL18A1-205ENST00000423214 SPAG9O60271 1321 aaKnown RBP26.01■■□□□ 1.75
COL18A1-205ENST00000423214 CNTLNQ9NXG0 1405 aa26.01■■□□□ 1.75
COL18A1-205ENST00000423214 PLXNC1O60486 1568 aa26■■□□□ 1.75
COL18A1-205ENST00000423214 KIAA1107Q9UPP5 1409 aa26■■□□□ 1.75
COL18A1-205ENST00000423214 CFDP1Q9UEE9 299 aaPredicted RBP26■■□□□ 1.75
COL18A1-205ENST00000423214 CLTCQ00610 1675 aaKnown RBP25.99■■□□□ 1.75
COL18A1-205ENST00000423214 HNRNPMP52272 730 aaKnown RBP eCLIP25.97■■□□□ 1.75
COL18A1-205ENST00000423214 A2MP01023 1474 aa25.93■■□□□ 1.74
COL18A1-205ENST00000423214 ZNF142P52746 1687 aaPredicted RBP25.88■■□□□ 1.73
COL18A1-205ENST00000423214 MYO3AQ8NEV4 1616 aa25.88■■□□□ 1.73
COL18A1-205ENST00000423214 DMRT2Q9Y5R5 561 aa25.87■■□□□ 1.73
COL18A1-205ENST00000423214 NPATQ14207 1427 aa25.87■■□□□ 1.73
COL18A1-205ENST00000423214 CERKQ8TCT0 537 aa25.86■■□□□ 1.73
COL18A1-205ENST00000423214 NCOA2Q15596 1464 aa25.84■■□□□ 1.73
COL18A1-205ENST00000423214 CAMSAP2Q08AD1 1489 aa25.83■■□□□ 1.73
COL18A1-205ENST00000423214 MBD5Q9P267 1494 aa25.82■■□□□ 1.72
COL18A1-205ENST00000423214 ZNF644Q9H582 1327 aaPredicted RBP25.82■■□□□ 1.72
COL18A1-205ENST00000423214 CAMSAP1Q5T5Y3 1602 aa25.81■■□□□ 1.72
COL18A1-205ENST00000423214 ZMYM3Q14202 1370 aa25.81■■□□□ 1.72
COL18A1-205ENST00000423214 PTPRTO14522 1441 aa25.8■■□□□ 1.72
COL18A1-205ENST00000423214 CCDC141Q6ZP82 1450 aa25.8■■□□□ 1.72
COL18A1-205ENST00000423214 NCOA1Q15788 1441 aa25.8■■□□□ 1.72
COL18A1-205ENST00000423214 RTEL1-TNFRSF6BF6WH68 1400 aa25.79■■□□□ 1.72
COL18A1-205ENST00000423214 CEP170BQ9Y4F5 1589 aaPredicted RBP25.78■■□□□ 1.72
COL18A1-205ENST00000423214 GGT6Q6P531 493 aa25.76■■□□□ 1.71
COL18A1-205ENST00000423214 VPS8Q8N3P4 1428 aa25.75■■□□□ 1.71
COL18A1-205ENST00000423214 ARHGEF5Q12774 1597 aa25.74■■□□□ 1.71
COL18A1-205ENST00000423214 PTPRKQ15262 1439 aa25.71■■□□□ 1.71
COL18A1-205ENST00000423214 FAM135AQ9P2D6 1515 aa25.71■■□□□ 1.71
COL18A1-205ENST00000423214 KDM5DQ9BY66 1539 aa25.7■■□□□ 1.7
COL18A1-205ENST00000423214 LRRC9Q6ZRR7 1453 aa25.7■■□□□ 1.7
COL18A1-205ENST00000423214 DHX29Q7Z478 1369 aaKnown RBP25.69■■□□□ 1.7
COL18A1-205ENST00000423214 PPP6R1Q9UPN7 881 aa25.68■■□□□ 1.7
COL18A1-205ENST00000423214 POLR1AO95602 1720 aaPredicted RBP25.68■■□□□ 1.7
COL18A1-205ENST00000423214 LTBP4Q8N2S1 1624 aa25.66■■□□□ 1.7
COL18A1-205ENST00000423214 PLA2R1Q13018 1463 aa25.66■■□□□ 1.7
COL18A1-205ENST00000423214 RSPH4AQ5TD94 716 aa25.64■■□□□ 1.7
COL18A1-205ENST00000423214 MAST1Q9Y2H9 1570 aa25.63■■□□□ 1.69
COL18A1-205ENST00000423214 DNMT1P26358 1616 aaKnown RBP25.63■■□□□ 1.69
COL18A1-205ENST00000423214 MAP3K1Q13233 1512 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms