RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 CDC42BPBQ9Y5S2 1711 aa18.04■□□□□ 0.48
SSBP3-206ENST00000420121 CCDC18Q5T9S5 1454 aa18.04■□□□□ 0.48
SSBP3-206ENST00000420121 FYCO1Q9BQS8 1478 aa18.04■□□□□ 0.48
SSBP3-206ENST00000420121 CDK11AQ9UQ88 783 aaPredicted RBP18.02■□□□□ 0.48
SSBP3-206ENST00000420121 POGZQ7Z3K3 1410 aa18■□□□□ 0.47
SSBP3-206ENST00000420121 SCAPERQ9BY12 1400 aa18■□□□□ 0.47
SSBP3-206ENST00000420121 PREX2Q70Z35 1606 aa18■□□□□ 0.47
SSBP3-206ENST00000420121 YEATS2Q9ULM3 1422 aa17.99■□□□□ 0.47
SSBP3-206ENST00000420121 CDC42BPAQ5VT25 1732 aa17.99■□□□□ 0.47
SSBP3-206ENST00000420121 ZFYVE16Q7Z3T8 1539 aa17.98■□□□□ 0.47
SSBP3-206ENST00000420121 MADDQ8WXG6 1647 aa17.98■□□□□ 0.47
SSBP3-206ENST00000420121 HECW2Q9P2P5 1572 aa17.97■□□□□ 0.47
SSBP3-206ENST00000420121 MAGI2Q86UL8 1455 aa17.97■□□□□ 0.47
SSBP3-206ENST00000420121 ARHGAP5Q13017 1502 aa17.97■□□□□ 0.47
SSBP3-206ENST00000420121 EFCAB2Q5VUJ9 269 aa17.95■□□□□ 0.46
SSBP3-206ENST00000420121 KDM5CP41229 1560 aa17.95■□□□□ 0.46
SSBP3-206ENST00000420121 PTPRMP28827 1452 aa17.94■□□□□ 0.46
SSBP3-206ENST00000420121 ITSN2Q9NZM3 1697 aa17.92■□□□□ 0.46
SSBP3-206ENST00000420121 ABCC1P33527 1531 aa17.92■□□□□ 0.46
SSBP3-206ENST00000420121 CEP162Q5TB80 1403 aa17.91■□□□□ 0.46
SSBP3-206ENST00000420121 RIMS1Q86UR5 1692 aaKnown RBP17.91■□□□□ 0.46
SSBP3-206ENST00000420121 ARHGEF12Q9NZN5 1544 aa17.91■□□□□ 0.46
SSBP3-206ENST00000420121 ZNF518AQ6AHZ1 1483 aa17.9■□□□□ 0.46
SSBP3-206ENST00000420121 ARID4BQ4LE39 1312 aaPredicted RBP17.88■□□□□ 0.45
SSBP3-206ENST00000420121 ATP10AO60312 1499 aa17.87■□□□□ 0.45
SSBP3-206ENST00000420121 SAMD9LQ8IVG5 1584 aa17.87■□□□□ 0.45
SSBP3-206ENST00000420121 DIP2CQ9Y2E4 1556 aa17.87■□□□□ 0.45
SSBP3-206ENST00000420121 TRAPPC8Q9Y2L5 1435 aa17.86■□□□□ 0.45
SSBP3-206ENST00000420121 GPATCH8Q9UKJ3 1502 aaKnown RBP17.86■□□□□ 0.45
SSBP3-206ENST00000420121 ABCA6Q8N139 1617 aa17.86■□□□□ 0.45
SSBP3-206ENST00000420121 FER1L4A9Z1Z3 1794 aa17.85■□□□□ 0.45
SSBP3-206ENST00000420121 C9orf84Q5VXU9 1444 aa17.85■□□□□ 0.45
SSBP3-206ENST00000420121 AFAP1Q8N556 730 aa17.85■□□□□ 0.45
SSBP3-206ENST00000420121 KIDINS220Q9ULH0 1771 aa17.84■□□□□ 0.45
SSBP3-206ENST00000420121 REREQ9P2R6 1566 aa17.83■□□□□ 0.45
SSBP3-206ENST00000420121 MLH3Q9UHC1 1453 aa17.83■□□□□ 0.45
SSBP3-206ENST00000420121 EHBP1L1Q8N3D4 1523 aa17.81■□□□□ 0.44
SSBP3-206ENST00000420121 TIAM1Q13009 1591 aa17.8■□□□□ 0.44
SSBP3-206ENST00000420121 SYCP2Q9BX26 1530 aa17.8■□□□□ 0.44
SSBP3-206ENST00000420121 LOC105371045A0A1W2PR82 267 aa17.79■□□□□ 0.44
SSBP3-206ENST00000420121 MTUS2Q5JR59 1369 aa17.79■□□□□ 0.44
SSBP3-206ENST00000420121 LMTK3Q96Q04 1460 aa17.77■□□□□ 0.44
SSBP3-206ENST00000420121 MLECQ14165 292 aa17.75■□□□□ 0.43
SSBP3-206ENST00000420121 AGLP35573 1532 aa17.75■□□□□ 0.43
SSBP3-206ENST00000420121 CCNB3Q8WWL7 1395 aa17.74■□□□□ 0.43
SSBP3-206ENST00000420121 INO80Q9ULG1 1556 aaPredicted RBP17.74■□□□□ 0.43
SSBP3-206ENST00000420121 KIAA1107Q9UPP5 1409 aa17.73■□□□□ 0.43
SSBP3-206ENST00000420121 ZNF777Q9ULD5 760 aaPredicted RBP17.73■□□□□ 0.43
SSBP3-206ENST00000420121 SUPT6HQ7KZ85 1726 aaKnown RBP17.72■□□□□ 0.43
SSBP3-206ENST00000420121 VPS8Q8N3P4 1428 aa17.72■□□□□ 0.43
SSBP3-206ENST00000420121 PLEKHH2Q8IVE3 1493 aa17.71■□□□□ 0.43
SSBP3-206ENST00000420121 HNRNPMP52272 730 aaKnown RBP eCLIP17.71■□□□□ 0.43
SSBP3-206ENST00000420121 CFDP1Q9UEE9 299 aaPredicted RBP17.71■□□□□ 0.43
SSBP3-206ENST00000420121 ATP7AQ04656 1500 aa17.71■□□□□ 0.43
SSBP3-206ENST00000420121 NCOA2Q15596 1464 aa17.69■□□□□ 0.42
SSBP3-206ENST00000420121 MBD5Q9P267 1494 aa17.69■□□□□ 0.42
SSBP3-206ENST00000420121 C3P01024 1663 aa17.68■□□□□ 0.42
SSBP3-206ENST00000420121 PLXNC1O60486 1568 aa17.68■□□□□ 0.42
SSBP3-206ENST00000420121 MYT1LQ9UL68 1186 aa17.68■□□□□ 0.42
SSBP3-206ENST00000420121 ZNF644Q9H582 1327 aaPredicted RBP17.68■□□□□ 0.42
SSBP3-206ENST00000420121 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
SSBP3-206ENST00000420121 PREX1Q8TCU6 1659 aa17.67■□□□□ 0.42
SSBP3-206ENST00000420121 SPAG9O60271 1321 aaKnown RBP17.66■□□□□ 0.42
SSBP3-206ENST00000420121 LRRC9Q6ZRR7 1453 aa17.65■□□□□ 0.42
SSBP3-206ENST00000420121 MAP3K1Q13233 1512 aa17.64■□□□□ 0.41
SSBP3-206ENST00000420121 ADGBQ8N7X0 1667 aa17.64■□□□□ 0.41
SSBP3-206ENST00000420121 CEBPAP49715 358 aaPredicted RBP17.63■□□□□ 0.41
SSBP3-206ENST00000420121 SETD1BQ9UPS6 1966 aaKnown RBP17.62■□□□□ 0.41
SSBP3-206ENST00000420121 CAMSAP2Q08AD1 1489 aa17.62■□□□□ 0.41
SSBP3-206ENST00000420121 MROH2AA6NES4 1674 aa17.61■□□□□ 0.41
SSBP3-206ENST00000420121 HSPA2P54652 639 aa17.61■□□□□ 0.41
SSBP3-206ENST00000420121 A2MP01023 1474 aa17.61■□□□□ 0.41
SSBP3-206ENST00000420121 RTEL1-TNFRSF6BF6WH68 1400 aa17.58■□□□□ 0.41
SSBP3-206ENST00000420121 ARHGEF5Q12774 1597 aa17.57■□□□□ 0.4
SSBP3-206ENST00000420121 CCDC141Q6ZP82 1450 aa17.57■□□□□ 0.4
SSBP3-206ENST00000420121 KANK4Q5T7N3 995 aaPredicted RBP17.57■□□□□ 0.4
SSBP3-206ENST00000420121 CLTCQ00610 1675 aaKnown RBP17.57■□□□□ 0.4
SSBP3-206ENST00000420121 ILDR1Q86SU0 546 aaPredicted RBP17.56■□□□□ 0.4
SSBP3-206ENST00000420121 STRCQ7RTU9 1775 aa17.56■□□□□ 0.4
SSBP3-206ENST00000420121 CNTLNQ9NXG0 1405 aa17.55■□□□□ 0.4
SSBP3-206ENST00000420121 UHRF1BP1Q6BDS2 1440 aa17.52■□□□□ 0.4
SSBP3-206ENST00000420121 MAST1Q9Y2H9 1570 aa17.5■□□□□ 0.39
SSBP3-206ENST00000420121 MYOM3Q5VTT5 1437 aa17.5■□□□□ 0.39
SSBP3-206ENST00000420121 DHX29Q7Z478 1369 aaKnown RBP17.5■□□□□ 0.39
SSBP3-206ENST00000420121 ZMYM3Q14202 1370 aa17.49■□□□□ 0.39
SSBP3-206ENST00000420121 NPATQ14207 1427 aa17.48■□□□□ 0.39
SSBP3-206ENST00000420121 MIA2Q96PC5 1412 aa17.48■□□□□ 0.39
SSBP3-206ENST00000420121 RSPH4AQ5TD94 716 aa17.48■□□□□ 0.39
SSBP3-206ENST00000420121 ESF1Q9H501 851 aaKnown RBP17.48■□□□□ 0.39
SSBP3-206ENST00000420121 MYO3AQ8NEV4 1616 aa17.46■□□□□ 0.39
SSBP3-206ENST00000420121 PTPRKQ15262 1439 aa17.46■□□□□ 0.39
SSBP3-206ENST00000420121 ZNF142P52746 1687 aaPredicted RBP17.45■□□□□ 0.38
SSBP3-206ENST00000420121 GGT6Q6P531 493 aa17.45■□□□□ 0.38
SSBP3-206ENST00000420121 CROCC2H7BZ55 1655 aa17.44■□□□□ 0.38
SSBP3-206ENST00000420121 PPP6R1Q9UPN7 881 aa17.43■□□□□ 0.38
SSBP3-206ENST00000420121 RNF17Q9BXT8 1623 aaKnown RBP17.43■□□□□ 0.38
SSBP3-206ENST00000420121 PTPN23Q9H3S7 1636 aa17.43■□□□□ 0.38
SSBP3-206ENST00000420121 FAM135AQ9P2D6 1515 aa17.42■□□□□ 0.38
SSBP3-206ENST00000420121 KDM5DQ9BY66 1539 aa17.41■□□□□ 0.38
SSBP3-206ENST00000420121 EIF2AK4Q9P2K8 1649 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms