RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 MAGI1Q96QZ7 1491 aaPredicted RBP12.05□□□□□ -0.48
HMGN1-205ENST00000419378 TSHZ2Q9NRE2 1034 aa12.03□□□□□ -0.48
HMGN1-205ENST00000419378 PCDHB8Q9UN66 801 aa12.03□□□□□ -0.48
HMGN1-205ENST00000419378 PCDHB13Q9Y5F0 798 aa12.03□□□□□ -0.48
HMGN1-205ENST00000419378 SYNJ2O15056 1496 aa12.01□□□□□ -0.49
HMGN1-205ENST00000419378 CD44P16070 742 aaKnown RBP11.98□□□□□ -0.49
HMGN1-205ENST00000419378 PDAP1Q13442 181 aaKnown RBP11.98□□□□□ -0.49
HMGN1-205ENST00000419378 ZNF579Q8NAF0 562 aaKnown RBP11.98□□□□□ -0.49
HMGN1-205ENST00000419378 ZRANB1Q9UGI0 708 aa11.98□□□□□ -0.49
HMGN1-205ENST00000419378 KDM2AQ9Y2K7 1162 aa11.98□□□□□ -0.49
HMGN1-205ENST00000419378 GTPBP6O43824 516 aaPredicted RBP11.97□□□□□ -0.49
HMGN1-205ENST00000419378 RIMBP3CA6NJZ7 1639 aa11.97□□□□□ -0.49
HMGN1-205ENST00000419378 RIMBP3BA6NNM3 1639 aa11.97□□□□□ -0.49
HMGN1-205ENST00000419378 RIMBP3Q9UFD9 1639 aa11.97□□□□□ -0.49
HMGN1-205ENST00000419378 ADAMTS12P58397 1594 aa11.96□□□□□ -0.49
HMGN1-205ENST00000419378 MAP3K13O43283 966 aa11.96□□□□□ -0.49
HMGN1-205ENST00000419378 CHMP7Q8WUX9 453 aaPredicted RBP11.96□□□□□ -0.49
HMGN1-205ENST00000419378 KIF12Q96FN5 646 aa11.96□□□□□ -0.49
HMGN1-205ENST00000419378 ARHGEF11O15085 1522 aa11.96□□□□□ -0.5
HMGN1-205ENST00000419378 ERICH3Q5RHP9 1530 aa11.96□□□□□ -0.5
HMGN1-205ENST00000419378 CLASP1Q7Z460 1538 aa11.96□□□□□ -0.5
HMGN1-205ENST00000419378 PSEN1P49768 467 aa11.94□□□□□ -0.5
HMGN1-205ENST00000419378 IFNL1Q8IU54 200 aa11.94□□□□□ -0.5
HMGN1-205ENST00000419378 GRIN2AQ12879 1464 aa11.92□□□□□ -0.5
HMGN1-205ENST00000419378 FHAD1B1AJZ9 1412 aa11.92□□□□□ -0.5
HMGN1-205ENST00000419378 PHF12Q96QT6 1004 aa11.91□□□□□ -0.5
HMGN1-205ENST00000419378 KIF27Q86VH2 1401 aa11.88□□□□□ -0.51
HMGN1-205ENST00000419378 NUP160Q12769 1436 aa11.87□□□□□ -0.51
HMGN1-205ENST00000419378 CEP170Q5SW79 1584 aa11.87□□□□□ -0.51
HMGN1-205ENST00000419378 C19orf67A6NJJ6 358 aa11.86□□□□□ -0.51
HMGN1-205ENST00000419378 RYDENQ9NUL5 291 aaKnown RBP11.86□□□□□ -0.51
HMGN1-205ENST00000419378 ARAP1Q96P48 1450 aa11.86□□□□□ -0.51
HMGN1-205ENST00000419378 CUL7Q14999 1698 aa11.84□□□□□ -0.51
HMGN1-205ENST00000419378 IGF1RP08069 1367 aa11.83□□□□□ -0.52
HMGN1-205ENST00000419378 CYB5RLQ6IPT4 315 aa11.8□□□□□ -0.52
HMGN1-205ENST00000419378 RUSC2Q8N2Y8 1516 aa11.8□□□□□ -0.52
HMGN1-205ENST00000419378 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
HMGN1-205ENST00000419378 CABP2Q9NPB3 220 aa11.79□□□□□ -0.52
HMGN1-205ENST00000419378 BCANQ96GW7 911 aa11.78□□□□□ -0.52
HMGN1-205ENST00000419378 MFRPQ9BY79 579 aa11.78□□□□□ -0.52
HMGN1-205ENST00000419378 ERCC6L2Q5T890 1561 aa11.77□□□□□ -0.53
HMGN1-205ENST00000419378 EFCAB3Q8N7B9 438 aa11.77□□□□□ -0.53
HMGN1-205ENST00000419378 MS4A3Q96HJ5 214 aa11.77□□□□□ -0.53
HMGN1-205ENST00000419378 SP7Q8TDD2 431 aaPredicted RBP11.76□□□□□ -0.53
HMGN1-205ENST00000419378 CARMIL1Q5VZK9 1371 aa11.75□□□□□ -0.53
HMGN1-205ENST00000419378 TRPC6Q9Y210 931 aa11.74□□□□□ -0.53
HMGN1-205ENST00000419378 KIAA0586Q9BVV6 1533 aa11.72□□□□□ -0.53
HMGN1-205ENST00000419378 HAX1O00165 279 aa11.72□□□□□ -0.53
HMGN1-205ENST00000419378 TMEM106CQ9BVX2 250 aa11.72□□□□□ -0.53
HMGN1-205ENST00000419378 PRG4Q92954 1404 aaPredicted RBP11.71□□□□□ -0.53
HMGN1-205ENST00000419378 SOX12O15370 315 aa11.7□□□□□ -0.54
HMGN1-205ENST00000419378 JPH4Q96JJ6 628 aa11.7□□□□□ -0.54
HMGN1-205ENST00000419378 PHF8Q9UPP1 1060 aa11.7□□□□□ -0.54
HMGN1-205ENST00000419378 NLRP6P59044 892 aa11.69□□□□□ -0.54
HMGN1-205ENST00000419378 FBXO22Q8NEZ5 403 aa11.69□□□□□ -0.54
HMGN1-205ENST00000419378 RAPGEF2Q9Y4G8 1499 aa11.69□□□□□ -0.54
HMGN1-205ENST00000419378 EVX2Q03828 476 aa11.68□□□□□ -0.54
HMGN1-205ENST00000419378 PPP1R37O75864 691 aa11.67□□□□□ -0.54
HMGN1-205ENST00000419378 CADPS2Q86UW7 1296 aa11.66□□□□□ -0.54
HMGN1-205ENST00000419378 IQGAP2Q13576 1575 aa11.66□□□□□ -0.54
HMGN1-205ENST00000419378 GOLGA2Q08379 1002 aa11.65□□□□□ -0.54
HMGN1-205ENST00000419378 PRXQ9BXM0 1461 aa11.64□□□□□ -0.55
HMGN1-205ENST00000419378 GALR2O43603 387 aaPredicted RBP11.64□□□□□ -0.55
HMGN1-205ENST00000419378 TIE1P35590 1138 aa11.63□□□□□ -0.55
HMGN1-205ENST00000419378 TTLL13PA6NNM8 815 aa11.61□□□□□ -0.55
HMGN1-205ENST00000419378 CTTNBP2Q8WZ74 1663 aa11.61□□□□□ -0.55
HMGN1-205ENST00000419378 MKRN3Q13064 507 aaKnown RBP11.6□□□□□ -0.55
HMGN1-205ENST00000419378 MS4A4AQ96JQ5 239 aa11.6□□□□□ -0.55
HMGN1-205ENST00000419378 BMP2KQ9NSY1 1161 aaPredicted RBP11.6□□□□□ -0.55
HMGN1-205ENST00000419378 UGGT2Q9NYU1 1516 aa11.6□□□□□ -0.55
HMGN1-205ENST00000419378 EEA1Q15075 1411 aa11.6□□□□□ -0.55
HMGN1-205ENST00000419378 CARMIL2Q6F5E8 1435 aa11.59□□□□□ -0.55
HMGN1-205ENST00000419378 DISP1Q96F81 1524 aa11.58□□□□□ -0.56
HMGN1-205ENST00000419378 ADCY10Q96PN6 1610 aa11.57□□□□□ -0.56
HMGN1-205ENST00000419378 KIAA0556O60303 1618 aa11.57□□□□□ -0.56
HMGN1-205ENST00000419378 TNIKQ9UKE5 1360 aa11.56□□□□□ -0.56
HMGN1-205ENST00000419378 NBR1Q14596 966 aa11.56□□□□□ -0.56
HMGN1-205ENST00000419378 PTPRGP23470 1445 aa11.55□□□□□ -0.56
HMGN1-205ENST00000419378 CLCN6P51797 869 aa11.54□□□□□ -0.56
HMGN1-205ENST00000419378 WDR70Q9NW82 654 aa11.54□□□□□ -0.56
HMGN1-205ENST00000419378 TRIM35Q9UPQ4 493 aa11.54□□□□□ -0.56
HMGN1-205ENST00000419378 MAPKBP1O60336 1514 aa11.52□□□□□ -0.57
HMGN1-205ENST00000419378 TTBK1Q5TCY1 1321 aaPredicted RBP11.52□□□□□ -0.57
HMGN1-205ENST00000419378 GOLGA3Q08378 1498 aa11.51□□□□□ -0.57
HMGN1-205ENST00000419378 KIF21BO75037 1637 aa11.51□□□□□ -0.57
HMGN1-205ENST00000419378 FAM9AQ8IZU1 332 aaPredicted RBP11.51□□□□□ -0.57
HMGN1-205ENST00000419378 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.51□□□□□ -0.578e-8■■□□□ 13
HMGN1-205ENST00000419378 UACAQ9BZF9 1416 aa11.49□□□□□ -0.57
HMGN1-205ENST00000419378 UHRF1BP1LA0JNW5 1464 aa11.49□□□□□ -0.57
HMGN1-205ENST00000419378 ABCC2Q92887 1545 aa11.49□□□□□ -0.57
HMGN1-205ENST00000419378 PRKCSHP14314 528 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-205ENST00000419378 ATN1P54259 1190 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-205ENST00000419378 ILDR1Q86SU0 546 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-205ENST00000419378 KIF13AQ9H1H9 1805 aa11.48□□□□□ -0.57
HMGN1-205ENST00000419378 SAMD9Q5K651 1589 aa11.46□□□□□ -0.57
HMGN1-205ENST00000419378 DIP2BQ9P265 1576 aa11.46□□□□□ -0.57
HMGN1-205ENST00000419378 ABCC10Q5T3U5 1492 aa11.46□□□□□ -0.57
HMGN1-205ENST00000419378 ATMINO43313 823 aaPredicted RBP11.46□□□□□ -0.57
HMGN1-205ENST00000419378 P3H3Q8IVL6 736 aa11.46□□□□□ -0.57
HMGN1-205ENST00000419378 KCNV2Q8TDN2 545 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms