RNA–Protein interactions for RNA: ENST00000415428.5

LMBR1-204, Transcript of limb development membrane protein 1, humanhuman

TSL 1 (best)

Gene LMBR1, Length 3,457 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-204ENST00000415428 DEPDC5O75140 1603 aa11.53□□□□□ -0.56
LMBR1-204ENST00000415428 AKNAQ7Z591 1439 aa11.53□□□□□ -0.56
LMBR1-204ENST00000415428 MLH3Q9UHC1 1453 aa11.52□□□□□ -0.57
LMBR1-204ENST00000415428 PREX2Q70Z35 1606 aa11.52□□□□□ -0.57
LMBR1-204ENST00000415428 C9orf84Q5VXU9 1444 aa11.52□□□□□ -0.57
LMBR1-204ENST00000415428 POLR1AO95602 1720 aaPredicted RBP11.51□□□□□ -0.57
LMBR1-204ENST00000415428 DENND4BO75064 1496 aaPredicted RBP11.51□□□□□ -0.57
LMBR1-204ENST00000415428 SYNMO15061 1565 aa11.5□□□□□ -0.57
LMBR1-204ENST00000415428 SOCS7O14512 581 aa11.5□□□□□ -0.57
LMBR1-204ENST00000415428 YEATS2Q9ULM3 1422 aa11.49□□□□□ -0.57
LMBR1-204ENST00000415428 ABCA6Q8N139 1617 aa11.49□□□□□ -0.57
LMBR1-204ENST00000415428 KDM5AP29375 1690 aaKnown RBP11.49□□□□□ -0.57
LMBR1-204ENST00000415428 ATP10AO60312 1499 aa11.48□□□□□ -0.57
LMBR1-204ENST00000415428 MYO3AQ8NEV4 1616 aa11.48□□□□□ -0.57
LMBR1-204ENST00000415428 TCOF1Q13428 1488 aaKnown RBP11.47□□□□□ -0.57
LMBR1-204ENST00000415428 NCOA1Q15788 1441 aa11.47□□□□□ -0.57
LMBR1-204ENST00000415428 LRRIQ1Q96JM4 1722 aa11.47□□□□□ -0.57
LMBR1-204ENST00000415428 INO80Q9ULG1 1556 aaPredicted RBP11.47□□□□□ -0.57
LMBR1-204ENST00000415428 ALKQ9UM73 1620 aa11.46□□□□□ -0.57
LMBR1-204ENST00000415428 CDC42BPBQ9Y5S2 1711 aa11.46□□□□□ -0.57
LMBR1-204ENST00000415428 CNTLNQ9NXG0 1405 aa11.45□□□□□ -0.58
LMBR1-204ENST00000415428 ABCC1P33527 1531 aa11.45□□□□□ -0.58
LMBR1-204ENST00000415428 KIDINS220Q9ULH0 1771 aa11.44□□□□□ -0.58
LMBR1-204ENST00000415428 PLCH2O75038 1416 aa11.44□□□□□ -0.58
LMBR1-204ENST00000415428 CAMSAP2Q08AD1 1489 aa11.44□□□□□ -0.58
LMBR1-204ENST00000415428 CPS1P31327 1500 aa11.44□□□□□ -0.58
LMBR1-204ENST00000415428 ADGBQ8N7X0 1667 aa11.43□□□□□ -0.58
LMBR1-204ENST00000415428 EEA1Q15075 1411 aa11.41□□□□□ -0.58
LMBR1-204ENST00000415428 ZNF518AQ6AHZ1 1483 aa11.4□□□□□ -0.58
LMBR1-204ENST00000415428 ZC3H13Q5T200 1668 aaKnown RBP11.39□□□□□ -0.59
LMBR1-204ENST00000415428 MED14O60244 1454 aa11.39□□□□□ -0.59
LMBR1-204ENST00000415428 NEURL4Q96JN8 1562 aa11.39□□□□□ -0.59
LMBR1-204ENST00000415428 CERKQ8TCT0 537 aa11.39□□□□□ -0.59
LMBR1-204ENST00000415428 MED1Q15648 1581 aaPredicted RBP11.38□□□□□ -0.59
LMBR1-204ENST00000415428 KIF14Q15058 1648 aa11.37□□□□□ -0.59
LMBR1-204ENST00000415428 CDC42BPAQ5VT25 1732 aa11.36□□□□□ -0.59
LMBR1-204ENST00000415428 VWDEQ8N2E2 1590 aa11.36□□□□□ -0.59
LMBR1-204ENST00000415428 RNF17Q9BXT8 1623 aaKnown RBP11.35□□□□□ -0.59
LMBR1-204ENST00000415428 DMRT2Q9Y5R5 561 aa11.33□□□□□ -0.6
LMBR1-204ENST00000415428 CEP170BQ9Y4F5 1589 aaPredicted RBP11.32□□□□□ -0.6
LMBR1-204ENST00000415428 TRAPPC8Q9Y2L5 1435 aa11.32□□□□□ -0.6
LMBR1-204ENST00000415428 SUPT6HQ7KZ85 1726 aaKnown RBP11.31□□□□□ -0.6
LMBR1-204ENST00000415428 EIF2AK4Q9P2K8 1649 aaKnown RBP11.31□□□□□ -0.6
LMBR1-204ENST00000415428 KDM5DQ9BY66 1539 aa11.3□□□□□ -0.6
LMBR1-204ENST00000415428 DNMT1P26358 1616 aaKnown RBP11.3□□□□□ -0.6
LMBR1-204ENST00000415428 UHRF1BP1Q6BDS2 1440 aa11.3□□□□□ -0.6
LMBR1-204ENST00000415428 SAMD9LQ8IVG5 1584 aa11.29□□□□□ -0.6
LMBR1-204ENST00000415428 XIRP1Q702N8 1843 aaKnown RBP11.29□□□□□ -0.6
LMBR1-204ENST00000415428 MAST1Q9Y2H9 1570 aa11.27□□□□□ -0.6
LMBR1-204ENST00000415428 CAMSAP1Q5T5Y3 1602 aa11.26□□□□□ -0.61
LMBR1-204ENST00000415428 KIAA1107Q9UPP5 1409 aa11.26□□□□□ -0.61
LMBR1-204ENST00000415428 NWD1Q149M9 1564 aa11.25□□□□□ -0.61
LMBR1-204ENST00000415428 PPP6R1Q9UPN7 881 aa11.25□□□□□ -0.61
LMBR1-204ENST00000415428 CCDC18Q5T9S5 1454 aa11.24□□□□□ -0.61
LMBR1-204ENST00000415428 STRCP1A6NGW2 1772 aa11.23□□□□□ -0.61
LMBR1-204ENST00000415428 A2ML1A8K2U0 1454 aa11.23□□□□□ -0.61
LMBR1-204ENST00000415428 CLTCQ00610 1675 aaKnown RBP11.23□□□□□ -0.61
LMBR1-204ENST00000415428 PTPRKQ15262 1439 aa11.23□□□□□ -0.61
LMBR1-204ENST00000415428 LAMC1P11047 1609 aa11.21□□□□□ -0.62
LMBR1-204ENST00000415428 PLEKHH2Q8IVE3 1493 aa11.21□□□□□ -0.62
LMBR1-204ENST00000415428 RTEL1-TNFRSF6BF6WH68 1400 aa11.2□□□□□ -0.62
LMBR1-204ENST00000415428 IQGAP1P46940 1657 aa11.2□□□□□ -0.62
LMBR1-204ENST00000415428 TROQ12816 1431 aaPredicted RBP11.2□□□□□ -0.62
LMBR1-204ENST00000415428 ILDR2Q71H61 639 aa11.19□□□□□ -0.62
LMBR1-204ENST00000415428 ARHGEF5Q12774 1597 aa11.18□□□□□ -0.62
LMBR1-204ENST00000415428 SLIT1O75093 1534 aa11.16□□□□□ -0.62
LMBR1-204ENST00000415428 FMN1Q68DA7 1419 aa11.16□□□□□ -0.62
LMBR1-204ENST00000415428 ATP7AQ04656 1500 aa11.16□□□□□ -0.62
LMBR1-204ENST00000415428 NCOA2Q15596 1464 aa11.15□□□□□ -0.62
LMBR1-204ENST00000415428 NLRP1Q9C000 1473 aa11.15□□□□□ -0.62
LMBR1-204ENST00000415428 CDK13Q14004 1512 aaKnown RBP11.15□□□□□ -0.62
LMBR1-204ENST00000415428 PZPP20742 1482 aa11.14□□□□□ -0.63
LMBR1-204ENST00000415428 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
LMBR1-204ENST00000415428 UBR1Q8IWV7 1749 aa11.14□□□□□ -0.63
LMBR1-204ENST00000415428 SCAPERQ9BY12 1400 aa11.14□□□□□ -0.63
LMBR1-204ENST00000415428 UGGT1Q9NYU2 1555 aa11.13□□□□□ -0.63
LMBR1-204ENST00000415428 PKD2Q13563 968 aa11.13□□□□□ -0.63
LMBR1-204ENST00000415428 SHPRHQ149N8 1683 aa11.13□□□□□ -0.63
LMBR1-204ENST00000415428 MROH1Q8NDA8 1641 aa11.12□□□□□ -0.63
LMBR1-204ENST00000415428 PTPN23Q9H3S7 1636 aa11.12□□□□□ -0.63
LMBR1-204ENST00000415428 FYCO1Q9BQS8 1478 aa11.12□□□□□ -0.63
LMBR1-204ENST00000415428 ABCC3O15438 1527 aa11.11□□□□□ -0.63
LMBR1-204ENST00000415428 CDK12Q9NYV4 1490 aaPredicted RBP11.11□□□□□ -0.63
LMBR1-204ENST00000415428 CASKIN1Q8WXD9 1431 aa11.1□□□□□ -0.63
LMBR1-204ENST00000415428 SHANK2Q9UPX8 1470 aa11.09□□□□□ -0.63
LMBR1-204ENST00000415428 LRRC9Q6ZRR7 1453 aa11.08□□□□□ -0.64
LMBR1-204ENST00000415428 SETD1AO15047 1707 aaKnown RBP11.08□□□□□ -0.64
LMBR1-204ENST00000415428 LMTK2Q8IWU2 1503 aa11.08□□□□□ -0.64
LMBR1-204ENST00000415428 ARHGAP35Q9NRY4 1499 aa11.07□□□□□ -0.64
LMBR1-204ENST00000415428 CROCC2H7BZ55 1655 aa11.06□□□□□ -0.64
LMBR1-204ENST00000415428 CLIP1P30622 1438 aa11.05□□□□□ -0.64
LMBR1-204ENST00000415428 ARHGAP5Q13017 1502 aa11.05□□□□□ -0.64
LMBR1-204ENST00000415428 RAPGEF3O95398 923 aa11.04□□□□□ -0.64
LMBR1-204ENST00000415428 TET3O43151 1660 aa11.04□□□□□ -0.64
LMBR1-204ENST00000415428 ARHGAP31Q2M1Z3 1444 aa11.04□□□□□ -0.64
LMBR1-204ENST00000415428 MBD5Q9P267 1494 aa11.04□□□□□ -0.64
LMBR1-204ENST00000415428 PRDM15P57071 1507 aaPredicted RBP11.03□□□□□ -0.64
LMBR1-204ENST00000415428 DISP3Q9P2K9 1392 aa11.03□□□□□ -0.64
LMBR1-204ENST00000415428 AHDC1Q5TGY3 1603 aaPredicted RBP11.03□□□□□ -0.64
LMBR1-204ENST00000415428 TIAM1Q13009 1591 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms