RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NUP153P49790 1475 aaKnown RBP19.92■□□□□ 0.78
SMARCB1-203ENST00000407082 ZFYVE16Q7Z3T8 1539 aa19.92■□□□□ 0.78
SMARCB1-203ENST00000407082 EFCAB5A4FU69 1503 aa19.92■□□□□ 0.78
SMARCB1-203ENST00000407082 ZEB1P37275 1124 aaPredicted RBP19.9■□□□□ 0.78
SMARCB1-203ENST00000407082 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
SMARCB1-203ENST00000407082 CLIP1P30622 1438 aa19.9■□□□□ 0.78
SMARCB1-203ENST00000407082 ARHGAP35Q9NRY4 1499 aa19.89■□□□□ 0.77
SMARCB1-203ENST00000407082 CEP162Q5TB80 1403 aa19.88■□□□□ 0.77
SMARCB1-203ENST00000407082 FER1L4A9Z1Z3 1794 aa19.88■□□□□ 0.77
SMARCB1-203ENST00000407082 SIGLEC1Q9BZZ2 1709 aa19.88■□□□□ 0.77
SMARCB1-203ENST00000407082 CFAP74Q9C0B2 1584 aa19.87■□□□□ 0.77
SMARCB1-203ENST00000407082 MYT1LQ9UL68 1186 aa19.86■□□□□ 0.77
SMARCB1-203ENST00000407082 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.86■□□□□ 0.773e-6■■■□□ 15.2
SMARCB1-203ENST00000407082 SCAPERQ9BY12 1400 aa19.85■□□□□ 0.77
SMARCB1-203ENST00000407082 ZMYM4Q5VZL5 1548 aa19.84■□□□□ 0.77
SMARCB1-203ENST00000407082 MAGI2Q86UL8 1455 aa19.84■□□□□ 0.77
SMARCB1-203ENST00000407082 HECW1Q76N89 1606 aa19.84■□□□□ 0.77
SMARCB1-203ENST00000407082 ATP1B4Q9UN42 357 aaPredicted RBP19.83■□□□□ 0.77
SMARCB1-203ENST00000407082 TTC37Q6PGP7 1564 aa19.82■□□□□ 0.76
SMARCB1-203ENST00000407082 ATP10AO60312 1499 aa19.8■□□□□ 0.76
SMARCB1-203ENST00000407082 PREX1Q8TCU6 1659 aa19.79■□□□□ 0.76
SMARCB1-203ENST00000407082 FMN1Q68DA7 1419 aa19.77■□□□□ 0.76
SMARCB1-203ENST00000407082 UHRF1BP1Q6BDS2 1440 aa19.77■□□□□ 0.76
SMARCB1-203ENST00000407082 EFCAB2Q5VUJ9 269 aa19.77■□□□□ 0.76
SMARCB1-203ENST00000407082 C9orf84Q5VXU9 1444 aa19.76■□□□□ 0.75
SMARCB1-203ENST00000407082 SPATA31D1Q6ZQQ2 1576 aa19.76■□□□□ 0.75
SMARCB1-203ENST00000407082 ARHGEF12Q9NZN5 1544 aa19.76■□□□□ 0.75
SMARCB1-203ENST00000407082 ESF1Q9H501 851 aaKnown RBP19.75■□□□□ 0.75
SMARCB1-203ENST00000407082 PLCH2O75038 1416 aa19.75■□□□□ 0.75
SMARCB1-203ENST00000407082 STRCQ7RTU9 1775 aa19.75■□□□□ 0.75
SMARCB1-203ENST00000407082 AFAP1Q8N556 730 aa19.73■□□□□ 0.75
SMARCB1-203ENST00000407082 CDK13Q14004 1512 aaKnown RBP19.72■□□□□ 0.75
SMARCB1-203ENST00000407082 SETD1BQ9UPS6 1966 aaKnown RBP19.68■□□□□ 0.74
SMARCB1-203ENST00000407082 PTPRTO14522 1441 aa19.68■□□□□ 0.74
SMARCB1-203ENST00000407082 CDK11AQ9UQ88 783 aaPredicted RBP19.66■□□□□ 0.74
SMARCB1-203ENST00000407082 CASKIN1Q8WXD9 1431 aa19.64■□□□□ 0.73
SMARCB1-203ENST00000407082 ZNF518AQ6AHZ1 1483 aa19.62■□□□□ 0.73
SMARCB1-203ENST00000407082 UBAP1LF5GYI3 381 aa19.62■□□□□ 0.73
SMARCB1-203ENST00000407082 MYO5CQ9NQX4 1742 aa19.62■□□□□ 0.73
SMARCB1-203ENST00000407082 VPS8Q8N3P4 1428 aa19.61■□□□□ 0.73
SMARCB1-203ENST00000407082 ARHGAP5Q13017 1502 aa19.61■□□□□ 0.73
SMARCB1-203ENST00000407082 FYCO1Q9BQS8 1478 aa19.6■□□□□ 0.73
SMARCB1-203ENST00000407082 TRAPPC8Q9Y2L5 1435 aa19.59■□□□□ 0.73
SMARCB1-203ENST00000407082 LTBP4Q8N2S1 1624 aa19.58■□□□□ 0.73
SMARCB1-203ENST00000407082 C3P01024 1663 aa19.58■□□□□ 0.72
SMARCB1-203ENST00000407082 NCKAP5LQ9HCH0 1330 aa19.57■□□□□ 0.72
SMARCB1-203ENST00000407082 DIP2CQ9Y2E4 1556 aa19.55■□□□□ 0.72
SMARCB1-203ENST00000407082 KIF14Q15058 1648 aa19.54■□□□□ 0.72
SMARCB1-203ENST00000407082 ZNF335Q9H4Z2 1342 aaPredicted RBP19.54■□□□□ 0.72
SMARCB1-203ENST00000407082 NCOA1Q15788 1441 aa19.54■□□□□ 0.72
SMARCB1-203ENST00000407082 IQSEC2Q5JU85 1478 aa19.54■□□□□ 0.72
SMARCB1-203ENST00000407082 APLP2Q06481 763 aa19.53■□□□□ 0.72
SMARCB1-203ENST00000407082 KDM5CP41229 1560 aa19.53■□□□□ 0.72
SMARCB1-203ENST00000407082 CCDC18Q5T9S5 1454 aa19.52■□□□□ 0.72
SMARCB1-203ENST00000407082 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
SMARCB1-203ENST00000407082 TROQ12816 1431 aaPredicted RBP19.51■□□□□ 0.71
SMARCB1-203ENST00000407082 LRRIQ1Q96JM4 1722 aa19.5■□□□□ 0.71
SMARCB1-203ENST00000407082 CAMSAP1Q5T5Y3 1602 aa19.5■□□□□ 0.71
SMARCB1-203ENST00000407082 ABCA6Q8N139 1617 aa19.5■□□□□ 0.71
SMARCB1-203ENST00000407082 MLH3Q9UHC1 1453 aa19.49■□□□□ 0.71
SMARCB1-203ENST00000407082 CNTLNQ9NXG0 1405 aa19.48■□□□□ 0.71
SMARCB1-203ENST00000407082 ZNF777Q9ULD5 760 aaPredicted RBP19.47■□□□□ 0.71
SMARCB1-203ENST00000407082 REREQ9P2R6 1566 aa19.47■□□□□ 0.71
SMARCB1-203ENST00000407082 PPARGC1BQ86YN6 1023 aaKnown RBP19.46■□□□□ 0.71
SMARCB1-203ENST00000407082 AGLP35573 1532 aa19.46■□□□□ 0.71
SMARCB1-203ENST00000407082 ZMYM3Q14202 1370 aa19.45■□□□□ 0.7
SMARCB1-203ENST00000407082 PIP4K2BP78356 416 aa19.45■□□□□ 0.7
SMARCB1-203ENST00000407082 PKD2Q13563 968 aa19.42■□□□□ 0.7
SMARCB1-203ENST00000407082 CDC42BPBQ9Y5S2 1711 aa19.42■□□□□ 0.7
SMARCB1-203ENST00000407082 HSPA1LP34931 641 aa19.41■□□□□ 0.7
SMARCB1-203ENST00000407082 NPATQ14207 1427 aa19.41■□□□□ 0.7
SMARCB1-203ENST00000407082 MTUS2Q5JR59 1369 aa19.4■□□□□ 0.7
SMARCB1-203ENST00000407082 GGT6Q6P531 493 aa19.39■□□□□ 0.69
SMARCB1-203ENST00000407082 PPP6R1Q9UPN7 881 aa19.39■□□□□ 0.69
SMARCB1-203ENST00000407082 TIAM1Q13009 1591 aa19.39■□□□□ 0.69
SMARCB1-203ENST00000407082 SPAG9O60271 1321 aaKnown RBP19.38■□□□□ 0.69
SMARCB1-203ENST00000407082 ABCC1P33527 1531 aa19.38■□□□□ 0.69
SMARCB1-203ENST00000407082 MAP3K1Q13233 1512 aa19.38■□□□□ 0.69
SMARCB1-203ENST00000407082 KIDINS220Q9ULH0 1771 aa19.37■□□□□ 0.69
SMARCB1-203ENST00000407082 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.69
SMARCB1-203ENST00000407082 ITSN2Q9NZM3 1697 aa19.36■□□□□ 0.69
SMARCB1-203ENST00000407082 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
SMARCB1-203ENST00000407082 PHF23Q9BUL5 403 aaPredicted RBP19.36■□□□□ 0.69
SMARCB1-203ENST00000407082 TOM1O60784 492 aa19.35■□□□□ 0.69
SMARCB1-203ENST00000407082 PREX2Q70Z35 1606 aa19.35■□□□□ 0.69
SMARCB1-203ENST00000407082 SUPT6HQ7KZ85 1726 aaKnown RBP19.34■□□□□ 0.69
SMARCB1-203ENST00000407082 SENP3Q9H4L4 574 aaPredicted RBP19.34■□□□□ 0.69
SMARCB1-203ENST00000407082 CCER1Q8TC90 406 aaPredicted RBP19.33■□□□□ 0.68
SMARCB1-203ENST00000407082 LRRC9Q6ZRR7 1453 aa19.33■□□□□ 0.68
SMARCB1-203ENST00000407082 MROH2AA6NES4 1674 aa19.33■□□□□ 0.68
SMARCB1-203ENST00000407082 CLTCQ00610 1675 aaKnown RBP19.32■□□□□ 0.68
SMARCB1-203ENST00000407082 MED1Q15648 1581 aaPredicted RBP19.31■□□□□ 0.68
SMARCB1-203ENST00000407082 EHBP1L1Q8N3D4 1523 aa19.3■□□□□ 0.68
SMARCB1-203ENST00000407082 PLA2R1Q13018 1463 aa19.3■□□□□ 0.68
SMARCB1-203ENST00000407082 SAMD9LQ8IVG5 1584 aa19.3■□□□□ 0.68
SMARCB1-203ENST00000407082 MYO3AQ8NEV4 1616 aa19.29■□□□□ 0.68
SMARCB1-203ENST00000407082 CEP170BQ9Y4F5 1589 aaPredicted RBP19.29■□□□□ 0.68
SMARCB1-203ENST00000407082 PTPRKQ15262 1439 aa19.29■□□□□ 0.68
SMARCB1-203ENST00000407082 TCOF1Q13428 1488 aaKnown RBP19.28■□□□□ 0.68
SMARCB1-203ENST00000407082 SYCP2Q9BX26 1530 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 165.2 ms