RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 U2SURPO15042 1029 aaKnown RBP10.35□□□□□ -0.75
USP47-203ENST00000399455 PHF23Q9BUL5 403 aaPredicted RBP10.35□□□□□ -0.75
USP47-203ENST00000399455 MS4A1P11836 297 aa10.34□□□□□ -0.75
USP47-203ENST00000399455 CC2D2AQ9P2K1 1620 aa10.34□□□□□ -0.75
USP47-203ENST00000399455 GAPVD1Q14C86 1478 aa10.34□□□□□ -0.75
USP47-203ENST00000399455 SAFB2Q14151 953 aaKnown RBP eCLIP10.34□□□□□ -0.759e-7■■■■□ 22.3
USP47-203ENST00000399455 G3V3G9 751 aa10.34□□□□□ -0.75
USP47-203ENST00000399455 DCAF8Q5TAQ9 597 aa10.34□□□□□ -0.75
USP47-203ENST00000399455 EVA1CP58658 441 aa10.33□□□□□ -0.76
USP47-203ENST00000399455 NGDNQ8NEJ9 315 aaKnown RBP10.33□□□□□ -0.76
USP47-203ENST00000399455 MORC1Q86VD1 984 aa10.32□□□□□ -0.76
USP47-203ENST00000399455 TNNT2P45379 298 aaPredicted RBP10.31□□□□□ -0.76
USP47-203ENST00000399455 CALD1Q05682 793 aaKnown RBP10.31□□□□□ -0.76
USP47-203ENST00000399455 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP47-203ENST00000399455 HNRNPMP52272 730 aaKnown RBP eCLIP10.3□□□□□ -0.76
USP47-203ENST00000399455 NUP155O75694 1391 aa10.3□□□□□ -0.76
USP47-203ENST00000399455 TERF2IPQ9NYB0 399 aa10.3□□□□□ -0.76
USP47-203ENST00000399455 IFT140Q96RY7 1462 aa10.29□□□□□ -0.76
USP47-203ENST00000399455 NCLP19338 710 aaKnown RBP10.28□□□□□ -0.76
USP47-203ENST00000399455 PKD2Q13563 968 aa10.28□□□□□ -0.76
USP47-203ENST00000399455 ATF3P18847 181 aa10.27□□□□□ -0.76
USP47-203ENST00000399455 CCDC136Q96JN2 1154 aa10.27□□□□□ -0.76
USP47-203ENST00000399455 ROCK2O75116 1388 aaKnown RBP10.27□□□□□ -0.76
USP47-203ENST00000399455 GRIN2BQ13224 1484 aa10.27□□□□□ -0.77
USP47-203ENST00000399455 CC2D1BQ5T0F9 858 aaKnown RBP10.26□□□□□ -0.77
USP47-203ENST00000399455 NCAPD3P42695 1498 aa10.26□□□□□ -0.77
USP47-203ENST00000399455 FGD5Q6ZNL6 1462 aa10.26□□□□□ -0.77
USP47-203ENST00000399455 ZRSR1Q15695 479 aaKnown RBP10.26□□□□□ -0.77
USP47-203ENST00000399455 ZNF330Q9Y3S2 320 aaPredicted RBP10.26□□□□□ -0.77
USP47-203ENST00000399455 POGZQ7Z3K3 1410 aa10.26□□□□□ -0.77
USP47-203ENST00000399455 NEUROD2Q15784 382 aa10.25□□□□□ -0.77
USP47-203ENST00000399455 ISY1Q9ULR0 285 aaKnown RBP10.25□□□□□ -0.77
USP47-203ENST00000399455 MSH5O43196 834 aa10.25□□□□□ -0.77
USP47-203ENST00000399455 FHOD3Q2V2M9 1422 aa10.25□□□□□ -0.77
USP47-203ENST00000399455 AMPHP49418 695 aa10.24□□□□□ -0.77
USP47-203ENST00000399455 SETD5Q9C0A6 1442 aa10.24□□□□□ -0.77
USP47-203ENST00000399455 TULP1O00294 542 aaPredicted RBP10.24□□□□□ -0.77
USP47-203ENST00000399455 SF3B2Q13435 895 aaKnown RBP10.24□□□□□ -0.77
USP47-203ENST00000399455 VPS8Q8N3P4 1428 aa10.24□□□□□ -0.77
USP47-203ENST00000399455 HDAC5Q9UQL6 1122 aa10.23□□□□□ -0.77
USP47-203ENST00000399455 VGFO15240 615 aaPredicted RBP10.23□□□□□ -0.77
USP47-203ENST00000399455 FGD1P98174 961 aa10.22□□□□□ -0.77
USP47-203ENST00000399455 GTF2E1P29083 439 aaPredicted RBP10.21□□□□□ -0.77
USP47-203ENST00000399455 TAF7LQ5H9L4 462 aa10.21□□□□□ -0.77
USP47-203ENST00000399455 KCNJ4P48050 445 aa10.21□□□□□ -0.78
USP47-203ENST00000399455 WASHC2AQ641Q2 1341 aa10.2□□□□□ -0.78
USP47-203ENST00000399455 BECN1Q14457 450 aa10.2□□□□□ -0.78
USP47-203ENST00000399455 HIRIP3Q9BW71 556 aaPredicted RBP10.19□□□□□ -0.78
USP47-203ENST00000399455 SYNJ2O15056 1496 aa10.19□□□□□ -0.78
USP47-203ENST00000399455 ARHGAP5Q13017 1502 aa10.19□□□□□ -0.78
USP47-203ENST00000399455 PSME1Q06323 249 aa10.19□□□□□ -0.78
USP47-203ENST00000399455 C1orf141Q5JVX7 400 aa10.19□□□□□ -0.78
USP47-203ENST00000399455 CFAP44Q96MT7 982 aa10.19□□□□□ -0.78
USP47-203ENST00000399455 KTN1Q86UP2 1357 aaKnown RBP10.19□□□□□ -0.78
USP47-203ENST00000399455 NUTM2DQ5VT03 806 aaPredicted RBP10.19□□□□□ -0.78
USP47-203ENST00000399455 LMOD3Q0VAK6 560 aa10.18□□□□□ -0.78
USP47-203ENST00000399455 FKBP8Q14318 412 aa10.18□□□□□ -0.78
USP47-203ENST00000399455 TIMELESSQ9UNS1 1208 aa10.18□□□□□ -0.78
USP47-203ENST00000399455 AQRO60306 1485 aaKnown RBP eCLIP10.18□□□□□ -0.781e-6■■■■□ 24.4
USP47-203ENST00000399455 HMGXB3Q12766 1538 aa10.17□□□□□ -0.78
USP47-203ENST00000399455 CCDC144AA2RUR9 1427 aa10.17□□□□□ -0.78
USP47-203ENST00000399455 CUX1P39880 1505 aa10.17□□□□□ -0.78
USP47-203ENST00000399455 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
USP47-203ENST00000399455 STK31Q9BXU1 1019 aa10.17□□□□□ -0.78
USP47-203ENST00000399455 GOLGA6L22H0YM25 854 aa10.16□□□□□ -0.78
USP47-203ENST00000399455 PRG4Q92954 1404 aaPredicted RBP10.16□□□□□ -0.78
USP47-203ENST00000399455 MPHOSPH9Q99550 1183 aa10.16□□□□□ -0.78
USP47-203ENST00000399455 CLSTN1O94985 981 aa10.16□□□□□ -0.78
USP47-203ENST00000399455 NAP1L2Q9ULW6 460 aaPredicted RBP10.16□□□□□ -0.78
USP47-203ENST00000399455 IPO8O15397 1037 aaKnown RBP10.16□□□□□ -0.78
USP47-203ENST00000399455 HMGB2P26583 209 aaKnown RBP10.16□□□□□ -0.78
USP47-203ENST00000399455 GORABQ5T7V8 394 aa10.16□□□□□ -0.78
USP47-203ENST00000399455 MCCP23508 829 aa10.15□□□□□ -0.78
USP47-203ENST00000399455 GPATCH3Q96I76 525 aa10.15□□□□□ -0.78
USP47-203ENST00000399455 FRAT1Q92837 279 aaPredicted RBP10.14□□□□□ -0.79
USP47-203ENST00000399455 EVC2Q86UK5 1308 aa10.14□□□□□ -0.79
USP47-203ENST00000399455 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
USP47-203ENST00000399455 COG3Q96JB2 828 aa10.14□□□□□ -0.79
USP47-203ENST00000399455 CHMP3Q9Y3E7 222 aa10.14□□□□□ -0.79
USP47-203ENST00000399455 KLHL34Q8N239 644 aa10.13□□□□□ -0.79
USP47-203ENST00000399455 DDRGK1Q96HY6 314 aa10.13□□□□□ -0.79
USP47-203ENST00000399455 LTV1Q96GA3 475 aaPredicted RBP10.13□□□□□ -0.79
USP47-203ENST00000399455 GTF3C3Q9Y5Q9 886 aa10.13□□□□□ -0.79
USP47-203ENST00000399455 TTC5Q8N0Z6 440 aa10.12□□□□□ -0.79
USP47-203ENST00000399455 NUTM2FA1L443 756 aa10.12□□□□□ -0.79
USP47-203ENST00000399455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.12□□□□□ -0.792e-6■■■□□ 18.9
USP47-203ENST00000399455 PLEKHH2Q8IVE3 1493 aa10.12□□□□□ -0.79
USP47-203ENST00000399455 U2AF1L5P0DN76 240 aaPredicted RBP10.12□□□□□ -0.79
USP47-203ENST00000399455 U2AF1Q01081 240 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP47-203ENST00000399455 SNAPC4Q5SXM2 1469 aa10.11□□□□□ -0.79
USP47-203ENST00000399455 FRAT2O75474 233 aaPredicted RBP10.11□□□□□ -0.79
USP47-203ENST00000399455 THEMISQ8N1K5 641 aaPredicted RBP10.11□□□□□ -0.79
USP47-203ENST00000399455 TRIM34Q9BYJ4 488 aa10.1□□□□□ -0.79
USP47-203ENST00000399455 SIN3AQ96ST3 1273 aa10.1□□□□□ -0.79
USP47-203ENST00000399455 GPRASP1Q5JY77 1395 aa10.1□□□□□ -0.79
USP47-203ENST00000399455 TAOK2Q9UL54 1235 aa10.09□□□□□ -0.79
USP47-203ENST00000399455 SYNJ1O43426 1573 aa10.09□□□□□ -0.79
USP47-203ENST00000399455 GNL2Q13823 731 aaKnown RBP10.09□□□□□ -0.79
USP47-203ENST00000399455 NOL10Q9BSC4 688 aaKnown RBP10.09□□□□□ -0.79
USP47-203ENST00000399455 DNMBPQ6XZF7 1577 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms