RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 ITSN2Q9NZM3 1697 aa19.71■□□□□ 0.74
PRAME-202ENST00000398743 ADCY10Q96PN6 1610 aa19.7■□□□□ 0.74
PRAME-202ENST00000398743 ZNF644Q9H582 1327 aaPredicted RBP19.7■□□□□ 0.74
PRAME-202ENST00000398743 DDX10Q13206 875 aaKnown RBP19.7■□□□□ 0.74
PRAME-202ENST00000398743 KDM5BQ9UGL1 1544 aa19.69■□□□□ 0.74
PRAME-202ENST00000398743 MPHOSPH9Q99550 1183 aa19.68■□□□□ 0.74
PRAME-202ENST00000398743 CAMSAP2Q08AD1 1489 aa19.68■□□□□ 0.74
PRAME-202ENST00000398743 CFDP1Q9UEE9 299 aaPredicted RBP19.67■□□□□ 0.74
PRAME-202ENST00000398743 GPATCH8Q9UKJ3 1502 aaKnown RBP19.67■□□□□ 0.74
PRAME-202ENST00000398743 ABCA8O94911 1581 aa19.67■□□□□ 0.74
PRAME-202ENST00000398743 KIF14Q15058 1648 aa19.67■□□□□ 0.74
PRAME-202ENST00000398743 PELP1Q8IZL8 1130 aaKnown RBP19.66■□□□□ 0.74
PRAME-202ENST00000398743 HIRIP3Q9BW71 556 aaPredicted RBP19.66■□□□□ 0.74
PRAME-202ENST00000398743 PLEKHD1A6NEE1 506 aa19.61■□□□□ 0.73
PRAME-202ENST00000398743 ATP10BO94823 1461 aa19.6■□□□□ 0.73
PRAME-202ENST00000398743 ADGBQ8N7X0 1667 aa19.59■□□□□ 0.73
PRAME-202ENST00000398743 ADGRL2O95490 1459 aa19.58■□□□□ 0.72
PRAME-202ENST00000398743 NCOA1Q15788 1441 aa19.58■□□□□ 0.72
PRAME-202ENST00000398743 ZNF777Q9ULD5 760 aaPredicted RBP19.58■□□□□ 0.72
PRAME-202ENST00000398743 ANKRD30BQ9BXX2 1392 aa19.57■□□□□ 0.72
PRAME-202ENST00000398743 CROCC2H7BZ55 1655 aa19.57■□□□□ 0.72
PRAME-202ENST00000398743 FOXD1Q16676 465 aa19.56■□□□□ 0.72
PRAME-202ENST00000398743 ABCC10Q5T3U5 1492 aa19.55■□□□□ 0.72
PRAME-202ENST00000398743 KCNH8Q96L42 1107 aa19.55■□□□□ 0.72
PRAME-202ENST00000398743 SLC4A1APQ9BWU0 796 aaKnown RBP19.55■□□□□ 0.72
PRAME-202ENST00000398743 RPRD2Q5VT52 1461 aaKnown RBP19.55■□□□□ 0.72
PRAME-202ENST00000398743 PTPRGP23470 1445 aa19.54■□□□□ 0.72
PRAME-202ENST00000398743 ANP32CO43423 234 aa19.53■□□□□ 0.72
PRAME-202ENST00000398743 CDC42BPAQ5VT25 1732 aa19.53■□□□□ 0.72
PRAME-202ENST00000398743 ANKRD30AQ9BXX3 1397 aa19.53■□□□□ 0.72
PRAME-202ENST00000398743 L3MBTL2Q969R5 705 aa19.52■□□□□ 0.72
PRAME-202ENST00000398743 PZPP20742 1482 aa19.5■□□□□ 0.71
PRAME-202ENST00000398743 CHD1O14646 1710 aa19.5■□□□□ 0.71
PRAME-202ENST00000398743 SHANK2Q9UPX8 1470 aa19.5■□□□□ 0.71
PRAME-202ENST00000398743 CCER2I3L3R5 266 aa19.5■□□□□ 0.71
PRAME-202ENST00000398743 TEX14Q8IWB6 1497 aa19.48■□□□□ 0.71
PRAME-202ENST00000398743 HSPA5P11021 654 aaKnown RBP19.47■□□□□ 0.71
PRAME-202ENST00000398743 EIF4G2P78344 907 aaKnown RBP eCLIP19.47■□□□□ 0.71
PRAME-202ENST00000398743 C9orf84Q5VXU9 1444 aa19.46■□□□□ 0.71
PRAME-202ENST00000398743 ANKRD50Q9ULJ7 1429 aa19.46■□□□□ 0.71
PRAME-202ENST00000398743 SHROOM2Q13796 1616 aa19.45■□□□□ 0.7
PRAME-202ENST00000398743 KIAA1107Q9UPP5 1409 aa19.43■□□□□ 0.7
PRAME-202ENST00000398743 TSPY4P0CV99 314 aa19.42■□□□□ 0.7
PRAME-202ENST00000398743 TSPY10P0CW01 314 aa19.42■□□□□ 0.7
PRAME-202ENST00000398743 ARHGEF5Q12774 1597 aa19.41■□□□□ 0.7
PRAME-202ENST00000398743 WASHC2AQ641Q2 1341 aa19.41■□□□□ 0.7
PRAME-202ENST00000398743 PREX2Q70Z35 1606 aa19.39■□□□□ 0.69
PRAME-202ENST00000398743 NBPF8Q3BBV2 869 aa19.39■□□□□ 0.69
PRAME-202ENST00000398743 MBD5Q9P267 1494 aa19.38■□□□□ 0.69
PRAME-202ENST00000398743 PKD2Q13563 968 aa19.37■□□□□ 0.69
PRAME-202ENST00000398743 HNRNPMP52272 730 aaKnown RBP eCLIP19.36■□□□□ 0.693e-11■□□□□ 9.5
PRAME-202ENST00000398743 SAMD9LQ8IVG5 1584 aa19.36■□□□□ 0.69
PRAME-202ENST00000398743 CCDC141Q6ZP82 1450 aa19.36■□□□□ 0.69
PRAME-202ENST00000398743 KIF15Q9NS87 1388 aa19.36■□□□□ 0.69
PRAME-202ENST00000398743 NUP155O75694 1391 aa19.35■□□□□ 0.69
PRAME-202ENST00000398743 ABCC2Q92887 1545 aa19.35■□□□□ 0.69
PRAME-202ENST00000398743 KDM5DQ9BY66 1539 aa19.35■□□□□ 0.69
PRAME-202ENST00000398743 CDC42BPBQ9Y5S2 1711 aa19.35■□□□□ 0.69
PRAME-202ENST00000398743 RSPH4AQ5TD94 716 aa19.33■□□□□ 0.69
PRAME-202ENST00000398743 SUPT16HQ9Y5B9 1047 aaKnown RBP19.33■□□□□ 0.69
PRAME-202ENST00000398743 ERCC6L2Q5T890 1561 aa19.33■□□□□ 0.68
PRAME-202ENST00000398743 CNTLNQ9NXG0 1405 aa19.32■□□□□ 0.68
PRAME-202ENST00000398743 SPATA31E1Q6ZUB1 1445 aa19.31■□□□□ 0.68
PRAME-202ENST00000398743 CCDC7Q96M83 1385 aa19.31■□□□□ 0.68
PRAME-202ENST00000398743 TTC37Q6PGP7 1564 aa19.3■□□□□ 0.68
PRAME-202ENST00000398743 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.3■□□□□ 0.687e-13■□□□□ 11.3
PRAME-202ENST00000398743 ARHGAP5Q13017 1502 aa19.29■□□□□ 0.68
PRAME-202ENST00000398743 SYCP2Q9BX26 1530 aa19.28■□□□□ 0.68
PRAME-202ENST00000398743 C11orf95C9JLR9 678 aaPredicted RBP19.27■□□□□ 0.68
PRAME-202ENST00000398743 CLASP1Q7Z460 1538 aa19.27■□□□□ 0.67
PRAME-202ENST00000398743 MAST1Q9Y2H9 1570 aa19.25■□□□□ 0.67
PRAME-202ENST00000398743 PLEKHH2Q8IVE3 1493 aa19.24■□□□□ 0.67
PRAME-202ENST00000398743 MYO5CQ9NQX4 1742 aa19.23■□□□□ 0.67
PRAME-202ENST00000398743 POLR1AO95602 1720 aaPredicted RBP19.23■□□□□ 0.67
PRAME-202ENST00000398743 ARHGEF12Q9NZN5 1544 aa19.23■□□□□ 0.67
PRAME-202ENST00000398743 KIF7Q2M1P5 1343 aa19.22■□□□□ 0.67
PRAME-202ENST00000398743 UHRF1BP1Q6BDS2 1440 aa19.22■□□□□ 0.67
PRAME-202ENST00000398743 UHRF1BP1LA0JNW5 1464 aa19.21■□□□□ 0.67
PRAME-202ENST00000398743 FAM135AQ9P2D6 1515 aa19.21■□□□□ 0.67
PRAME-202ENST00000398743 ZNF326Q5BKZ1 582 aaKnown RBP19.21■□□□□ 0.67
PRAME-202ENST00000398743 USP47Q96K76 1375 aa19.2■□□□□ 0.66
PRAME-202ENST00000398743 ZCCHC11Q5TAX3 1644 aaKnown RBP19.19■□□□□ 0.66
PRAME-202ENST00000398743 PLXNC1O60486 1568 aa19.18■□□□□ 0.66
PRAME-202ENST00000398743 RALGAPBQ86X10 1494 aa19.18■□□□□ 0.66
PRAME-202ENST00000398743 PRKRIP1Q9H875 184 aaPredicted RBP19.17■□□□□ 0.66
PRAME-202ENST00000398743 UNC13BO14795 1591 aa19.17■□□□□ 0.66
PRAME-202ENST00000398743 PLCH2O75038 1416 aa19.17■□□□□ 0.66
PRAME-202ENST00000398743 KDM5CP41229 1560 aa19.16■□□□□ 0.66
PRAME-202ENST00000398743 HNRNPUQ00839 825 aaKnown RBP eCLIP19.13■□□□□ 0.65
PRAME-202ENST00000398743 DUOX2Q9NRD8 1548 aa19.12■□□□□ 0.65
PRAME-202ENST00000398743 ARID4BQ4LE39 1312 aaPredicted RBP19.12■□□□□ 0.65
PRAME-202ENST00000398743 EFCAB2Q5VUJ9 269 aa19.12■□□□□ 0.65
PRAME-202ENST00000398743 CCDC144AA2RUR9 1427 aa19.11■□□□□ 0.65
PRAME-202ENST00000398743 CARD11Q9BXL7 1154 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 BCORL1Q5H9F3 1711 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 ABCC1P33527 1531 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 FKBP8Q14318 412 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 DCAF11Q8TEB1 546 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 ERBINQ96RT1 1412 aa19.1■□□□□ 0.65
PRAME-202ENST00000398743 NEFLP07196 543 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms