RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PPRC1Q5VV67 1664 aaKnown RBP21.71■■□□□ 1.07
SKA1-202ENST00000398452 SUPT6HQ7KZ85 1726 aaKnown RBP21.71■■□□□ 1.07
SKA1-202ENST00000398452 MAGI3Q5TCQ9 1506 aa21.67■■□□□ 1.06
SKA1-202ENST00000398452 NCOA2Q15596 1464 aa21.67■■□□□ 1.06
SKA1-202ENST00000398452 WDR7Q9Y4E6 1490 aa21.67■■□□□ 1.06
SKA1-202ENST00000398452 CACNB1Q02641 598 aaPredicted RBP21.67■■□□□ 1.06
SKA1-202ENST00000398452 KDM4FA0A1W2PPD8 638 aa21.65■■□□□ 1.06
SKA1-202ENST00000398452 KIF14Q15058 1648 aa21.65■■□□□ 1.06
SKA1-202ENST00000398452 CCNB3Q8WWL7 1395 aa21.64■■□□□ 1.06
SKA1-202ENST00000398452 MAP3K4Q9Y6R4 1608 aa21.64■■□□□ 1.05
SKA1-202ENST00000398452 COL17A1Q9UMD9 1497 aaPredicted RBP21.62■■□□□ 1.05
SKA1-202ENST00000398452 TEX14Q8IWB6 1497 aa21.61■■□□□ 1.05
SKA1-202ENST00000398452 PHLDB1Q86UU1 1377 aa21.6■■□□□ 1.05
SKA1-202ENST00000398452 MYOM3Q5VTT5 1437 aa21.58■■□□□ 1.05
SKA1-202ENST00000398452 CD109Q6YHK3 1445 aa21.58■■□□□ 1.05
SKA1-202ENST00000398452 RNF39Q9H2S5 420 aa21.57■■□□□ 1.04
SKA1-202ENST00000398452 FAM50AQ14320 339 aaKnown RBP21.55■■□□□ 1.04
SKA1-202ENST00000398452 PCGF6Q9BYE7 350 aa21.54■■□□□ 1.04
SKA1-202ENST00000398452 CFDP1Q9UEE9 299 aaPredicted RBP21.54■■□□□ 1.04
SKA1-202ENST00000398452 FGD6Q6ZV73 1430 aa21.52■■□□□ 1.04
SKA1-202ENST00000398452 RRBP1Q9P2E9 1410 aaKnown RBP21.52■■□□□ 1.04
SKA1-202ENST00000398452 ITSN2Q9NZM3 1697 aa21.51■■□□□ 1.03
SKA1-202ENST00000398452 MIA2Q96PC5 1412 aa21.51■■□□□ 1.03
SKA1-202ENST00000398452 ZNF777Q9ULD5 760 aaPredicted RBP21.48■■□□□ 1.03
SKA1-202ENST00000398452 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.48■■□□□ 1.03
SKA1-202ENST00000398452 GPATCH8Q9UKJ3 1502 aaKnown RBP21.48■■□□□ 1.03
SKA1-202ENST00000398452 ADGRL1O94910 1474 aa21.45■■□□□ 1.03
SKA1-202ENST00000398452 EFCAB2Q5VUJ9 269 aa21.44■■□□□ 1.02
SKA1-202ENST00000398452 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.44■■□□□ 1.02
SKA1-202ENST00000398452 TTC37Q6PGP7 1564 aa21.44■■□□□ 1.02
SKA1-202ENST00000398452 ARHGAP5Q13017 1502 aa21.43■■□□□ 1.02
SKA1-202ENST00000398452 ITGAEP38570 1179 aa21.42■■□□□ 1.02
SKA1-202ENST00000398452 PTPN23Q9H3S7 1636 aa21.42■■□□□ 1.02
SKA1-202ENST00000398452 MYO5CQ9NQX4 1742 aa21.42■■□□□ 1.02
SKA1-202ENST00000398452 PLCH2O75038 1416 aa21.41■■□□□ 1.02
SKA1-202ENST00000398452 ABCA9Q8IUA7 1624 aa21.4■■□□□ 1.02
SKA1-202ENST00000398452 NPM3O75607 178 aaKnown RBP21.4■■□□□ 1.02
SKA1-202ENST00000398452 CDC42BPAQ5VT25 1732 aa21.39■■□□□ 1.01
SKA1-202ENST00000398452 PREX2Q70Z35 1606 aa21.39■■□□□ 1.01
SKA1-202ENST00000398452 TCOF1Q13428 1488 aaKnown RBP21.39■■□□□ 1.01
SKA1-202ENST00000398452 ARAP3Q8WWN8 1544 aa21.35■■□□□ 1.01
SKA1-202ENST00000398452 CAMSAP2Q08AD1 1489 aa21.35■■□□□ 1.01
SKA1-202ENST00000398452 PLEKHH2Q8IVE3 1493 aa21.35■■□□□ 1.01
SKA1-202ENST00000398452 RAPGEF3O95398 923 aa21.35■■□□□ 1.01
SKA1-202ENST00000398452 ZNF644Q9H582 1327 aaPredicted RBP21.33■■□□□ 1.01
SKA1-202ENST00000398452 RSPH4AQ5TD94 716 aa21.33■■□□□ 1.01
SKA1-202ENST00000398452 CDC42BPBQ9Y5S2 1711 aa21.32■■□□□ 1
SKA1-202ENST00000398452 FANCAO15360 1455 aa21.32■■□□□ 1
SKA1-202ENST00000398452 C1QBPQ07021 282 aaKnown RBP21.31■■□□□ 1
SKA1-202ENST00000398452 TSPY4P0CV99 314 aa21.29■■□□□ 1
SKA1-202ENST00000398452 TSPY10P0CW01 314 aa21.29■■□□□ 1
SKA1-202ENST00000398452 CFAP74Q9C0B2 1584 aa21.28■■□□□ 1
SKA1-202ENST00000398452 HNRNPMP52272 730 aaKnown RBP eCLIP21.27■■□□□ 14e-10■■■□□ 18.6
SKA1-202ENST00000398452 KIAA1107Q9UPP5 1409 aa21.26■□□□□ 0.99
SKA1-202ENST00000398452 DAPK1P53355 1430 aa21.25■□□□□ 0.99
SKA1-202ENST00000398452 SAMD9LQ8IVG5 1584 aa21.25■□□□□ 0.99
SKA1-202ENST00000398452 AKNAQ7Z591 1439 aa21.24■□□□□ 0.99
SKA1-202ENST00000398452 NEO1Q92859 1461 aa21.23■□□□□ 0.99
SKA1-202ENST00000398452 ARID4BQ4LE39 1312 aaPredicted RBP21.23■□□□□ 0.99
SKA1-202ENST00000398452 DNMT1P26358 1616 aaKnown RBP21.22■□□□□ 0.99
SKA1-202ENST00000398452 CCDC141Q6ZP82 1450 aa21.22■□□□□ 0.99
SKA1-202ENST00000398452 CHIC2Q9UKJ5 165 aa21.22■□□□□ 0.99
SKA1-202ENST00000398452 SYCP2Q9BX26 1530 aa21.22■□□□□ 0.99
SKA1-202ENST00000398452 ABCC5O15440 1437 aa21.21■□□□□ 0.99
SKA1-202ENST00000398452 SCAPERQ9BY12 1400 aa21.21■□□□□ 0.99
SKA1-202ENST00000398452 ARHGEF5Q12774 1597 aa21.2■□□□□ 0.98
SKA1-202ENST00000398452 MYT1LQ9UL68 1186 aa21.2■□□□□ 0.98
SKA1-202ENST00000398452 ABCC1P33527 1531 aa21.19■□□□□ 0.98
SKA1-202ENST00000398452 MBD5Q9P267 1494 aa21.17■□□□□ 0.98
SKA1-202ENST00000398452 SHANK2Q9UPX8 1470 aa21.16■□□□□ 0.98
SKA1-202ENST00000398452 ANKRD30AQ9BXX3 1397 aa21.16■□□□□ 0.98
SKA1-202ENST00000398452 DENND4BO75064 1496 aaPredicted RBP21.15■□□□□ 0.98
SKA1-202ENST00000398452 C9orf84Q5VXU9 1444 aa21.15■□□□□ 0.98
SKA1-202ENST00000398452 FRMPD1Q5SYB0 1578 aa21.14■□□□□ 0.98
SKA1-202ENST00000398452 ROCK1Q13464 1354 aa21.14■□□□□ 0.98
SKA1-202ENST00000398452 SPAG9O60271 1321 aaKnown RBP21.14■□□□□ 0.97
SKA1-202ENST00000398452 RRP7BPQ9NSQ0 103 aa21.14■□□□□ 0.97
SKA1-202ENST00000398452 PTPRKQ15262 1439 aa21.13■□□□□ 0.97
SKA1-202ENST00000398452 HECW2Q9P2P5 1572 aa21.13■□□□□ 0.97
SKA1-202ENST00000398452 ZNF518AQ6AHZ1 1483 aa21.12■□□□□ 0.97
SKA1-202ENST00000398452 SETD5Q9C0A6 1442 aa21.12■□□□□ 0.97
SKA1-202ENST00000398452 TRAPPC8Q9Y2L5 1435 aa21.12■□□□□ 0.97
SKA1-202ENST00000398452 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
SKA1-202ENST00000398452 AFAP1Q8N556 730 aa21.11■□□□□ 0.97
SKA1-202ENST00000398452 CROCC2H7BZ55 1655 aa21.11■□□□□ 0.97
SKA1-202ENST00000398452 HFM1A2PYH4 1435 aa21.1■□□□□ 0.97
SKA1-202ENST00000398452 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.09■□□□□ 0.972e-6■■■■□ 20.8
SKA1-202ENST00000398452 ACIN1Q9UKV3 1341 aaKnown RBP21.08■□□□□ 0.97
SKA1-202ENST00000398452 ADGBQ8N7X0 1667 aa21.08■□□□□ 0.96
SKA1-202ENST00000398452 ADGRL2O95490 1459 aa21.07■□□□□ 0.96
SKA1-202ENST00000398452 POGZQ7Z3K3 1410 aa21.07■□□□□ 0.96
SKA1-202ENST00000398452 RICTORQ6R327 1708 aa21.07■□□□□ 0.96
SKA1-202ENST00000398452 RTEL1-TNFRSF6BF6WH68 1400 aa21.06■□□□□ 0.96
SKA1-202ENST00000398452 NCOA1Q15788 1441 aa21.06■□□□□ 0.96
SKA1-202ENST00000398452 MLECQ14165 292 aa21.06■□□□□ 0.96
SKA1-202ENST00000398452 MAST1Q9Y2H9 1570 aa21.06■□□□□ 0.96
SKA1-202ENST00000398452 RAB3GAP2Q9H2M9 1393 aa21.04■□□□□ 0.96
SKA1-202ENST00000398452 KIF15Q9NS87 1388 aa21.04■□□□□ 0.96
SKA1-202ENST00000398452 PTPRMP28827 1452 aa21.04■□□□□ 0.96
SKA1-202ENST00000398452 NAIPQ13075 1403 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms