RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 MTUS2Q5JR59 1369 aa23.16■■□□□ 1.3
SEC13-208ENST00000397109 ZMYM4Q5VZL5 1548 aa23.12■■□□□ 1.29
SEC13-208ENST00000397109 POGZQ7Z3K3 1410 aa23.12■■□□□ 1.29
SEC13-208ENST00000397109 VPS8Q8N3P4 1428 aa23.12■■□□□ 1.29
SEC13-208ENST00000397109 CDC42BPBQ9Y5S2 1711 aa23.12■■□□□ 1.29
SEC13-208ENST00000397109 MAGI2Q86UL8 1455 aa23.11■■□□□ 1.29
SEC13-208ENST00000397109 PREX2Q70Z35 1606 aa23.11■■□□□ 1.29
SEC13-208ENST00000397109 ARHGEF40Q8TER5 1519 aa23.08■■□□□ 1.28
SEC13-208ENST00000397109 CDC42BPAQ5VT25 1732 aa23.07■■□□□ 1.28
SEC13-208ENST00000397109 EHBP1L1Q8N3D4 1523 aa23.07■■□□□ 1.28
SEC13-208ENST00000397109 ZNF518AQ6AHZ1 1483 aa23.06■■□□□ 1.28
SEC13-208ENST00000397109 GPATCH8Q9UKJ3 1502 aaKnown RBP23.05■■□□□ 1.28
SEC13-208ENST00000397109 CCNB3Q8WWL7 1395 aa23.05■■□□□ 1.28
SEC13-208ENST00000397109 ZFYVE16Q7Z3T8 1539 aa23.05■■□□□ 1.28
SEC13-208ENST00000397109 ARID4BQ4LE39 1312 aaPredicted RBP23.04■■□□□ 1.28
SEC13-208ENST00000397109 AFAP1Q8N556 730 aa23.02■■□□□ 1.28
SEC13-208ENST00000397109 CFDP1Q9UEE9 299 aaPredicted RBP23.02■■□□□ 1.28
SEC13-208ENST00000397109 YEATS2Q9ULM3 1422 aa23.02■■□□□ 1.28
SEC13-208ENST00000397109 ZNF777Q9ULD5 760 aaPredicted RBP23.01■■□□□ 1.27
SEC13-208ENST00000397109 ABCC1P33527 1531 aa23■■□□□ 1.27
SEC13-208ENST00000397109 TIAM1Q13009 1591 aa22.99■■□□□ 1.27
SEC13-208ENST00000397109 KDM5CP41229 1560 aa22.99■■□□□ 1.27
SEC13-208ENST00000397109 MYT1LQ9UL68 1186 aa22.98■■□□□ 1.27
SEC13-208ENST00000397109 ARHGEF12Q9NZN5 1544 aa22.97■■□□□ 1.27
SEC13-208ENST00000397109 TRAPPC8Q9Y2L5 1435 aa22.96■■□□□ 1.27
SEC13-208ENST00000397109 ATP10AO60312 1499 aa22.96■■□□□ 1.27
SEC13-208ENST00000397109 PLEKHH2Q8IVE3 1493 aa22.96■■□□□ 1.27
SEC13-208ENST00000397109 MAP3K1Q13233 1512 aa22.96■■□□□ 1.27
SEC13-208ENST00000397109 ITSN2Q9NZM3 1697 aa22.96■■□□□ 1.27
SEC13-208ENST00000397109 KIAA1107Q9UPP5 1409 aa22.95■■□□□ 1.26
SEC13-208ENST00000397109 MLH3Q9UHC1 1453 aa22.95■■□□□ 1.26
SEC13-208ENST00000397109 SAMD9LQ8IVG5 1584 aa22.95■■□□□ 1.26
SEC13-208ENST00000397109 BCORL1Q5H9F3 1711 aa22.94■■□□□ 1.26
SEC13-208ENST00000397109 ADAMTSL3P82987 1691 aa22.94■■□□□ 1.26
SEC13-208ENST00000397109 SUPT6HQ7KZ85 1726 aaKnown RBP22.94■■□□□ 1.26
SEC13-208ENST00000397109 C9orf84Q5VXU9 1444 aa22.93■■□□□ 1.26
SEC13-208ENST00000397109 HECW2Q9P2P5 1572 aa22.93■■□□□ 1.26
SEC13-208ENST00000397109 LRRC9Q6ZRR7 1453 aa22.92■■□□□ 1.26
SEC13-208ENST00000397109 NCOA2Q15596 1464 aa22.92■■□□□ 1.26
SEC13-208ENST00000397109 HNRNPMP52272 730 aaKnown RBP eCLIP22.92■■□□□ 1.26
SEC13-208ENST00000397109 APLP2Q06481 763 aa22.91■■□□□ 1.26
SEC13-208ENST00000397109 SYCP2Q9BX26 1530 aa22.9■■□□□ 1.26
SEC13-208ENST00000397109 SPAG9O60271 1321 aaKnown RBP22.87■■□□□ 1.25
SEC13-208ENST00000397109 KANK4Q5T7N3 995 aaPredicted RBP22.85■■□□□ 1.25
SEC13-208ENST00000397109 DIP2CQ9Y2E4 1556 aa22.85■■□□□ 1.25
SEC13-208ENST00000397109 PTPRMP28827 1452 aa22.85■■□□□ 1.25
SEC13-208ENST00000397109 SIGLEC1Q9BZZ2 1709 aa22.84■■□□□ 1.25
SEC13-208ENST00000397109 ZNF644Q9H582 1327 aaPredicted RBP22.84■■□□□ 1.25
SEC13-208ENST00000397109 MADDQ8WXG6 1647 aa22.84■■□□□ 1.25
SEC13-208ENST00000397109 REREQ9P2R6 1566 aa22.83■■□□□ 1.25
SEC13-208ENST00000397109 MLECQ14165 292 aa22.83■■□□□ 1.25
SEC13-208ENST00000397109 KIDINS220Q9ULH0 1771 aa22.82■■□□□ 1.24
SEC13-208ENST00000397109 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
SEC13-208ENST00000397109 RSPH4AQ5TD94 716 aa22.8■■□□□ 1.24
SEC13-208ENST00000397109 MBD5Q9P267 1494 aa22.8■■□□□ 1.24
SEC13-208ENST00000397109 AGLP35573 1532 aa22.78■■□□□ 1.24
SEC13-208ENST00000397109 RIMS1Q86UR5 1692 aaKnown RBP22.77■■□□□ 1.24
SEC13-208ENST00000397109 ATP7AQ04656 1500 aa22.77■■□□□ 1.24
SEC13-208ENST00000397109 CAMSAP2Q08AD1 1489 aa22.77■■□□□ 1.24
SEC13-208ENST00000397109 INO80Q9ULG1 1556 aaPredicted RBP22.74■■□□□ 1.23
SEC13-208ENST00000397109 MIA2Q96PC5 1412 aa22.74■■□□□ 1.23
SEC13-208ENST00000397109 FER1L4A9Z1Z3 1794 aa22.74■■□□□ 1.23
SEC13-208ENST00000397109 RTEL1-TNFRSF6BF6WH68 1400 aa22.73■■□□□ 1.23
SEC13-208ENST00000397109 MYOM3Q5VTT5 1437 aa22.73■■□□□ 1.23
SEC13-208ENST00000397109 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
SEC13-208ENST00000397109 A2MP01023 1474 aa22.69■■□□□ 1.22
SEC13-208ENST00000397109 TSPY4P0CV99 314 aa22.69■■□□□ 1.22
SEC13-208ENST00000397109 TSPY10P0CW01 314 aa22.69■■□□□ 1.22
SEC13-208ENST00000397109 ARHGEF5Q12774 1597 aa22.69■■□□□ 1.22
SEC13-208ENST00000397109 ESF1Q9H501 851 aaKnown RBP22.68■■□□□ 1.22
SEC13-208ENST00000397109 PLPPR3Q6T4P5 718 aa22.66■■□□□ 1.22
SEC13-208ENST00000397109 ADGBQ8N7X0 1667 aa22.65■■□□□ 1.22
SEC13-208ENST00000397109 PLXNC1O60486 1568 aa22.64■■□□□ 1.21
SEC13-208ENST00000397109 CNTLNQ9NXG0 1405 aa22.62■■□□□ 1.21
SEC13-208ENST00000397109 DHX29Q7Z478 1369 aaKnown RBP22.62■■□□□ 1.21
SEC13-208ENST00000397109 PPP6R1Q9UPN7 881 aa22.6■■□□□ 1.21
SEC13-208ENST00000397109 CEBPAP49715 358 aaPredicted RBP22.59■■□□□ 1.21
SEC13-208ENST00000397109 FGD6Q6ZV73 1430 aa22.58■■□□□ 1.2
SEC13-208ENST00000397109 GGT6Q6P531 493 aa22.57■■□□□ 1.2
SEC13-208ENST00000397109 SETD1BQ9UPS6 1966 aaKnown RBP22.57■■□□□ 1.2
SEC13-208ENST00000397109 PTPN23Q9H3S7 1636 aa22.56■■□□□ 1.2
SEC13-208ENST00000397109 MAST1Q9Y2H9 1570 aa22.56■■□□□ 1.2
SEC13-208ENST00000397109 LMTK3Q96Q04 1460 aa22.56■■□□□ 1.2
SEC13-208ENST00000397109 TCOF1Q13428 1488 aaKnown RBP22.54■■□□□ 1.2
SEC13-208ENST00000397109 KIF3BO15066 747 aa22.53■■□□□ 1.2
SEC13-208ENST00000397109 C3P01024 1663 aa22.52■■□□□ 1.2
SEC13-208ENST00000397109 MROH2AA6NES4 1674 aa22.51■■□□□ 1.19
SEC13-208ENST00000397109 ZMYM3Q14202 1370 aa22.51■■□□□ 1.19
SEC13-208ENST00000397109 ABCC5O15440 1437 aa22.5■■□□□ 1.19
SEC13-208ENST00000397109 SHANK2Q9UPX8 1470 aa22.49■■□□□ 1.19
SEC13-208ENST00000397109 PREX1Q8TCU6 1659 aa22.48■■□□□ 1.19
SEC13-208ENST00000397109 DAPK1P53355 1430 aa22.47■■□□□ 1.19
SEC13-208ENST00000397109 UHRF1BP1Q6BDS2 1440 aa22.46■■□□□ 1.19
SEC13-208ENST00000397109 CLTCQ00610 1675 aaKnown RBP22.46■■□□□ 1.19
SEC13-208ENST00000397109 DNMT1P26358 1616 aaKnown RBP22.46■■□□□ 1.19
SEC13-208ENST00000397109 NPATQ14207 1427 aa22.45■■□□□ 1.18
SEC13-208ENST00000397109 HSPA2P54652 639 aa22.45■■□□□ 1.18
SEC13-208ENST00000397109 FAM135AQ9P2D6 1515 aa22.45■■□□□ 1.18
SEC13-208ENST00000397109 CROCC2H7BZ55 1655 aa22.44■■□□□ 1.18
SEC13-208ENST00000397109 DUOX2Q9NRD8 1548 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms