RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 MIA2Q96PC5 1412 aa15.85■□□□□ 0.13
TCOF1-203ENST00000394269 TSPY4P0CV99 314 aa15.83■□□□□ 0.13
TCOF1-203ENST00000394269 TSPY10P0CW01 314 aa15.83■□□□□ 0.13
TCOF1-203ENST00000394269 ZNF326Q5BKZ1 582 aaKnown RBP15.82■□□□□ 0.12
TCOF1-203ENST00000394269 ARHGEF11O15085 1522 aa15.82■□□□□ 0.12
TCOF1-203ENST00000394269 ABCC5O15440 1437 aa15.81■□□□□ 0.12
TCOF1-203ENST00000394269 DAPK1P53355 1430 aa15.81■□□□□ 0.12
TCOF1-203ENST00000394269 TIMELESSQ9UNS1 1208 aa15.81■□□□□ 0.12
TCOF1-203ENST00000394269 ATP10BO94823 1461 aa15.8■□□□□ 0.12
TCOF1-203ENST00000394269 L3MBTL2Q969R5 705 aa15.78■□□□□ 0.12
TCOF1-203ENST00000394269 TCOF1Q13428 1488 aaKnown RBP15.78■□□□□ 0.12
TCOF1-203ENST00000394269 GPATCH8Q9UKJ3 1502 aaKnown RBP15.77■□□□□ 0.12
TCOF1-203ENST00000394269 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.112e-8■■■■□ 22.6
TCOF1-203ENST00000394269 KDM6BO15054 1643 aa15.75■□□□□ 0.11
TCOF1-203ENST00000394269 CNGB1Q14028 1251 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-203ENST00000394269 PKD2Q13563 968 aa15.74■□□□□ 0.11
TCOF1-203ENST00000394269 KIF14Q15058 1648 aa15.73■□□□□ 0.11
TCOF1-203ENST00000394269 CAMSAP2Q08AD1 1489 aa15.73■□□□□ 0.11
TCOF1-203ENST00000394269 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
TCOF1-203ENST00000394269 MYT1LQ9UL68 1186 aa15.72■□□□□ 0.11
TCOF1-203ENST00000394269 POLR3GLQ9BT43 218 aa15.72■□□□□ 0.11
TCOF1-203ENST00000394269 ANKRD30AQ9BXX3 1397 aa15.71■□□□□ 0.1
TCOF1-203ENST00000394269 KDM2AQ9Y2K7 1162 aa15.69■□□□□ 0.1
TCOF1-203ENST00000394269 NUP155O75694 1391 aa15.69■□□□□ 0.1
TCOF1-203ENST00000394269 NCOA1Q15788 1441 aa15.68■□□□□ 0.1
TCOF1-203ENST00000394269 ERCC6L2Q5T890 1561 aa15.68■□□□□ 0.1
TCOF1-203ENST00000394269 AKNAQ7Z591 1439 aa15.68■□□□□ 0.1
TCOF1-203ENST00000394269 HSPA5P11021 654 aaKnown RBP15.68■□□□□ 0.1
TCOF1-203ENST00000394269 ROCK1Q13464 1354 aa15.67■□□□□ 0.1
TCOF1-203ENST00000394269 ANP32CO43423 234 aa15.66■□□□□ 0.1
TCOF1-203ENST00000394269 CHD1O14646 1710 aa15.66■□□□□ 0.1
TCOF1-203ENST00000394269 EIF4G2P78344 907 aaKnown RBP eCLIP15.65■□□□□ 0.1
TCOF1-203ENST00000394269 ABCA8O94911 1581 aa15.65■□□□□ 0.1
TCOF1-203ENST00000394269 PLPPR3Q6T4P5 718 aa15.65■□□□□ 0.1
TCOF1-203ENST00000394269 ANKRD50Q9ULJ7 1429 aa15.64■□□□□ 0.09
TCOF1-203ENST00000394269 NBPF8Q3BBV2 869 aa15.64■□□□□ 0.09
TCOF1-203ENST00000394269 DENND4BO75064 1496 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-203ENST00000394269 C9orf84Q5VXU9 1444 aa15.62■□□□□ 0.09
TCOF1-203ENST00000394269 RGL3Q3MIN7 710 aa15.62■□□□□ 0.09
TCOF1-203ENST00000394269 ANKRD30BQ9BXX2 1392 aa15.62■□□□□ 0.09
TCOF1-203ENST00000394269 KIF15Q9NS87 1388 aa15.62■□□□□ 0.09
TCOF1-203ENST00000394269 DNMT1P26358 1616 aaKnown RBP15.61■□□□□ 0.09
TCOF1-203ENST00000394269 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-203ENST00000394269 ABCC10Q5T3U5 1492 aa15.59■□□□□ 0.09
TCOF1-203ENST00000394269 EFCAB2Q5VUJ9 269 aa15.58■□□□□ 0.08
TCOF1-203ENST00000394269 AFAP1Q8N556 730 aa15.58■□□□□ 0.08
TCOF1-203ENST00000394269 ARHGAP5Q13017 1502 aa15.57■□□□□ 0.08
TCOF1-203ENST00000394269 DCAF11Q8TEB1 546 aa15.56■□□□□ 0.08
TCOF1-203ENST00000394269 GCC2Q8IWJ2 1684 aa15.55■□□□□ 0.08
TCOF1-203ENST00000394269 OSCARQ8IYS5 282 aa15.55■□□□□ 0.08
TCOF1-203ENST00000394269 C11orf95C9JLR9 678 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-203ENST00000394269 WASHC2AQ641Q2 1341 aa15.55■□□□□ 0.08
TCOF1-203ENST00000394269 NPM1P06748 294 aaKnown RBP eCLIP15.54■□□□□ 0.08
TCOF1-203ENST00000394269 ITSN2Q9NZM3 1697 aa15.53■□□□□ 0.08
TCOF1-203ENST00000394269 RSPH4AQ5TD94 716 aa15.53■□□□□ 0.08
TCOF1-203ENST00000394269 PZPP20742 1482 aa15.52■□□□□ 0.08
TCOF1-203ENST00000394269 KIAA1107Q9UPP5 1409 aa15.51■□□□□ 0.07
TCOF1-203ENST00000394269 RPRD2Q5VT52 1461 aaKnown RBP15.5■□□□□ 0.07
TCOF1-203ENST00000394269 CDC42BPAQ5VT25 1732 aa15.5■□□□□ 0.07
TCOF1-203ENST00000394269 MBD5Q9P267 1494 aa15.49■□□□□ 0.07
TCOF1-203ENST00000394269 ABCC2Q92887 1545 aa15.49■□□□□ 0.07
TCOF1-203ENST00000394269 SENP3Q9H4L4 574 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-203ENST00000394269 CARD11Q9BXL7 1154 aa15.49■□□□□ 0.07
TCOF1-203ENST00000394269 CCDC141Q6ZP82 1450 aa15.48■□□□□ 0.07
TCOF1-203ENST00000394269 SYCP2Q9BX26 1530 aa15.48■□□□□ 0.07
TCOF1-203ENST00000394269 SPAG9O60271 1321 aaKnown RBP15.47■□□□□ 0.07
TCOF1-203ENST00000394269 ADCY10Q96PN6 1610 aa15.47■□□□□ 0.07
TCOF1-203ENST00000394269 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.47■□□□□ 0.07
TCOF1-203ENST00000394269 KDM5BQ9UGL1 1544 aa15.47■□□□□ 0.07
TCOF1-203ENST00000394269 ADGRL2O95490 1459 aa15.46■□□□□ 0.07
TCOF1-203ENST00000394269 TTC37Q6PGP7 1564 aa15.45■□□□□ 0.06
TCOF1-203ENST00000394269 PELP1Q8IZL8 1130 aaKnown RBP15.44■□□□□ 0.06
TCOF1-203ENST00000394269 SAMD9LQ8IVG5 1584 aa15.44■□□□□ 0.06
TCOF1-203ENST00000394269 PLEKHH2Q8IVE3 1493 aa15.43■□□□□ 0.06
TCOF1-203ENST00000394269 SENP3-EIF4A1A0A087X0R7 540 aa15.43■□□□□ 0.06
TCOF1-203ENST00000394269 FAM9BQ8IZU0 186 aa15.42■□□□□ 0.06
TCOF1-203ENST00000394269 SHROOM2Q13796 1616 aa15.42■□□□□ 0.06
TCOF1-203ENST00000394269 PLCH2O75038 1416 aa15.41■□□□□ 0.06
TCOF1-203ENST00000394269 TRAPPC8Q9Y2L5 1435 aa15.41■□□□□ 0.06
TCOF1-203ENST00000394269 KIF7Q2M1P5 1343 aa15.41■□□□□ 0.06
TCOF1-203ENST00000394269 KIF3BO15066 747 aa15.41■□□□□ 0.06
TCOF1-203ENST00000394269 HNRNPUQ00839 825 aaKnown RBP eCLIP15.41■□□□□ 0.06
TCOF1-203ENST00000394269 BCANQ96GW7 911 aa15.41■□□□□ 0.06
TCOF1-203ENST00000394269 ST20-MTHFSA0A0A6YYL1 179 aa15.4■□□□□ 0.06
TCOF1-203ENST00000394269 TEX14Q8IWB6 1497 aa15.4■□□□□ 0.06
TCOF1-203ENST00000394269 CCER2I3L3R5 266 aa15.4■□□□□ 0.06
TCOF1-203ENST00000394269 CLASP1Q7Z460 1538 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 CCDC184Q52MB2 194 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 ARHGEF12Q9NZN5 1544 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 CDC42BPBQ9Y5S2 1711 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 USP47Q96K76 1375 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 CCDC7Q96M83 1385 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 SHANK2Q9UPX8 1470 aa15.39■□□□□ 0.05
TCOF1-203ENST00000394269 CCDC144AA2RUR9 1427 aa15.38■□□□□ 0.05
TCOF1-203ENST00000394269 NBPF1Q3BBV0 1214 aa15.38■□□□□ 0.05
TCOF1-203ENST00000394269 ADGBQ8N7X0 1667 aa15.37■□□□□ 0.05
TCOF1-203ENST00000394269 MRS2Q9HD23 443 aa15.37■□□□□ 0.05
TCOF1-203ENST00000394269 SCAPERQ9BY12 1400 aa15.36■□□□□ 0.05
TCOF1-203ENST00000394269 ZCCHC11Q5TAX3 1644 aaKnown RBP15.35■□□□□ 0.05
TCOF1-203ENST00000394269 PREX2Q70Z35 1606 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms