RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 GCC2Q8IWJ2 1684 aa19.27■□□□□ 0.68
SDC1-202ENST00000381150 SENP3-EIF4A1A0A087X0R7 540 aa19.26■□□□□ 0.67
SDC1-202ENST00000381150 AKNAQ7Z591 1439 aa19.26■□□□□ 0.67
SDC1-202ENST00000381150 ARID3CA6NKF2 412 aa19.24■□□□□ 0.67
SDC1-202ENST00000381150 DENND4BO75064 1496 aaPredicted RBP19.24■□□□□ 0.67
SDC1-202ENST00000381150 DEKP35659 375 aaKnown RBP19.24■□□□□ 0.67
SDC1-202ENST00000381150 KDM6BO15054 1643 aa19.23■□□□□ 0.67
SDC1-202ENST00000381150 NUP160Q12769 1436 aa19.23■□□□□ 0.67
SDC1-202ENST00000381150 CHMP7Q8WUX9 453 aaPredicted RBP19.22■□□□□ 0.67
SDC1-202ENST00000381150 RRP7BPQ9NSQ0 103 aa19.21■□□□□ 0.67
SDC1-202ENST00000381150 CHIC2Q9UKJ5 165 aa19.2■□□□□ 0.66
SDC1-202ENST00000381150 KDM5BQ9UGL1 1544 aa19.2■□□□□ 0.66
SDC1-202ENST00000381150 B4GALNT3Q6L9W6 998 aa19.17■□□□□ 0.66
SDC1-202ENST00000381150 PLB1Q6P1J6 1458 aa19.17■□□□□ 0.66
SDC1-202ENST00000381150 DNMT1P26358 1616 aaKnown RBP19.16■□□□□ 0.66
SDC1-202ENST00000381150 JPH4Q96JJ6 628 aa19.15■□□□□ 0.66
SDC1-202ENST00000381150 DAPK1P53355 1430 aa19.15■□□□□ 0.66
SDC1-202ENST00000381150 TONSLQ96HA7 1378 aa19.14■□□□□ 0.66
SDC1-202ENST00000381150 ABCC5O15440 1437 aa19.14■□□□□ 0.65
SDC1-202ENST00000381150 PRG4Q92954 1404 aaPredicted RBP19.13■□□□□ 0.65
SDC1-202ENST00000381150 ROCK1Q13464 1354 aa19.13■□□□□ 0.65
SDC1-202ENST00000381150 TROQ12816 1431 aaPredicted RBP19.13■□□□□ 0.65
SDC1-202ENST00000381150 ZNF644Q9H582 1327 aaPredicted RBP19.13■□□□□ 0.65
SDC1-202ENST00000381150 PRKCSHP14314 528 aaPredicted RBP19.13■□□□□ 0.65
SDC1-202ENST00000381150 FBLN2P98095 1184 aa19.12■□□□□ 0.65
SDC1-202ENST00000381150 FAM9BQ8IZU0 186 aa19.12■□□□□ 0.65
SDC1-202ENST00000381150 ADCY10Q96PN6 1610 aa19.11■□□□□ 0.65
SDC1-202ENST00000381150 CARMIL2Q6F5E8 1435 aa19.1■□□□□ 0.65
SDC1-202ENST00000381150 RTN4Q9NQC3 1192 aaKnown RBP19.1■□□□□ 0.65
SDC1-202ENST00000381150 KIF14Q15058 1648 aa19.08■□□□□ 0.64
SDC1-202ENST00000381150 GPATCH8Q9UKJ3 1502 aaKnown RBP19.07■□□□□ 0.64
SDC1-202ENST00000381150 ABCA8O94911 1581 aa19.07■□□□□ 0.64
SDC1-202ENST00000381150 MPHOSPH9Q99550 1183 aa19.07■□□□□ 0.64
SDC1-202ENST00000381150 CCER2I3L3R5 266 aa19.06■□□□□ 0.64
SDC1-202ENST00000381150 FANCIQ9NVI1 1328 aa19.06■□□□□ 0.64
SDC1-202ENST00000381150 ITSN2Q9NZM3 1697 aa19.04■□□□□ 0.64
SDC1-202ENST00000381150 ANO8Q9HCE9 1232 aaPredicted RBP19.04■□□□□ 0.64
SDC1-202ENST00000381150 CAMSAP2Q08AD1 1489 aa19.03■□□□□ 0.64
SDC1-202ENST00000381150 RTL5Q5HYW3 569 aaPredicted RBP19.02■□□□□ 0.64
SDC1-202ENST00000381150 ATP10BO94823 1461 aa19.01■□□□□ 0.63
SDC1-202ENST00000381150 POLR3GLQ9BT43 218 aa18.99■□□□□ 0.63
SDC1-202ENST00000381150 ANKRD30BQ9BXX2 1392 aa18.99■□□□□ 0.63
SDC1-202ENST00000381150 CFDP1Q9UEE9 299 aaPredicted RBP18.99■□□□□ 0.63
SDC1-202ENST00000381150 NCOA1Q15788 1441 aa18.99■□□□□ 0.63
SDC1-202ENST00000381150 ABCC10Q5T3U5 1492 aa18.98■□□□□ 0.63
SDC1-202ENST00000381150 PAK3O75914 559 aaPredicted RBP18.98■□□□□ 0.63
SDC1-202ENST00000381150 CROCC2H7BZ55 1655 aa18.98■□□□□ 0.63
SDC1-202ENST00000381150 CCDC136Q96JN2 1154 aa18.98■□□□□ 0.63
SDC1-202ENST00000381150 NOP58Q9Y2X3 529 aaKnown RBP18.98■□□□□ 0.63
SDC1-202ENST00000381150 NPM2Q86SE8 214 aaKnown RBP18.98■□□□□ 0.63
SDC1-202ENST00000381150 PPP4R2Q9NY27 417 aa18.98■□□□□ 0.63
SDC1-202ENST00000381150 CDC42BPAQ5VT25 1732 aa18.97■□□□□ 0.63
SDC1-202ENST00000381150 FOXD1Q16676 465 aa18.97■□□□□ 0.63
SDC1-202ENST00000381150 ADGRL2O95490 1459 aa18.97■□□□□ 0.63
SDC1-202ENST00000381150 ADGBQ8N7X0 1667 aa18.97■□□□□ 0.63
SDC1-202ENST00000381150 RPRD2Q5VT52 1461 aaKnown RBP18.94■□□□□ 0.62
SDC1-202ENST00000381150 PZPP20742 1482 aa18.93■□□□□ 0.62
SDC1-202ENST00000381150 L3MBTL2Q969R5 705 aa18.93■□□□□ 0.62
SDC1-202ENST00000381150 PLEKHD1A6NEE1 506 aa18.92■□□□□ 0.62
SDC1-202ENST00000381150 CHD1O14646 1710 aa18.91■□□□□ 0.62
SDC1-202ENST00000381150 CCDC184Q52MB2 194 aa18.91■□□□□ 0.62
SDC1-202ENST00000381150 MRS2Q9HD23 443 aa18.91■□□□□ 0.62
SDC1-202ENST00000381150 TEX14Q8IWB6 1497 aa18.9■□□□□ 0.62
SDC1-202ENST00000381150 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.89■□□□□ 0.61
SDC1-202ENST00000381150 ANP32AP39687 249 aaKnown RBP18.89■□□□□ 0.61
SDC1-202ENST00000381150 PTPRGP23470 1445 aa18.88■□□□□ 0.61
SDC1-202ENST00000381150 ZNF777Q9ULD5 760 aaPredicted RBP18.88■□□□□ 0.61
SDC1-202ENST00000381150 MYT1LQ9UL68 1186 aa18.88■□□□□ 0.61
SDC1-202ENST00000381150 SALL2Q9Y467 1007 aaPredicted RBP18.88■□□□□ 0.61
SDC1-202ENST00000381150 SHROOM2Q13796 1616 aa18.88■□□□□ 0.61
SDC1-202ENST00000381150 SLC4A1APQ9BWU0 796 aaKnown RBP18.87■□□□□ 0.61
SDC1-202ENST00000381150 HSPA5P11021 654 aaKnown RBP18.87■□□□□ 0.61
SDC1-202ENST00000381150 ZBTB47Q9UFB7 747 aaPredicted RBP18.85■□□□□ 0.61
SDC1-202ENST00000381150 SHANK2Q9UPX8 1470 aa18.85■□□□□ 0.61
SDC1-202ENST00000381150 NBPF8Q3BBV2 869 aa18.85■□□□□ 0.61
SDC1-202ENST00000381150 ANKRD30AQ9BXX3 1397 aa18.84■□□□□ 0.61
SDC1-202ENST00000381150 WASHC2AQ641Q2 1341 aa18.84■□□□□ 0.61
SDC1-202ENST00000381150 IL27Q8NEV9 243 aa18.83■□□□□ 0.61
SDC1-202ENST00000381150 ANKRD50Q9ULJ7 1429 aa18.82■□□□□ 0.6
SDC1-202ENST00000381150 LAS1LQ9Y4W2 734 aaKnown RBP18.82■□□□□ 0.6
SDC1-202ENST00000381150 MBD5Q9P267 1494 aa18.82■□□□□ 0.6
SDC1-202ENST00000381150 CDC42BPBQ9Y5S2 1711 aa18.81■□□□□ 0.6
SDC1-202ENST00000381150 EIF4G2P78344 907 aaKnown RBP eCLIP18.81■□□□□ 0.6
SDC1-202ENST00000381150 C9orf84Q5VXU9 1444 aa18.8■□□□□ 0.6
SDC1-202ENST00000381150 KIAA1107Q9UPP5 1409 aa18.8■□□□□ 0.6
SDC1-202ENST00000381150 ARHGEF5Q12774 1597 aa18.8■□□□□ 0.6
SDC1-202ENST00000381150 SPATA31E1Q6ZUB1 1445 aa18.79■□□□□ 0.6
SDC1-202ENST00000381150 ERCC6L2Q5T890 1561 aa18.78■□□□□ 0.6
SDC1-202ENST00000381150 SAMD9LQ8IVG5 1584 aa18.77■□□□□ 0.6
SDC1-202ENST00000381150 PREX2Q70Z35 1606 aa18.77■□□□□ 0.6
SDC1-202ENST00000381150 C11orf95C9JLR9 678 aaPredicted RBP18.77■□□□□ 0.6
SDC1-202ENST00000381150 KDM5DQ9BY66 1539 aa18.75■□□□□ 0.59
SDC1-202ENST00000381150 HNRNPMP52272 730 aaKnown RBP eCLIP18.75■□□□□ 0.59
SDC1-202ENST00000381150 PKD2Q13563 968 aa18.75■□□□□ 0.59
SDC1-202ENST00000381150 EIF5BO60841 1220 aaKnown RBP18.73■□□□□ 0.59
SDC1-202ENST00000381150 TSPY4P0CV99 314 aa18.71■□□□□ 0.59
SDC1-202ENST00000381150 TSPY10P0CW01 314 aa18.71■□□□□ 0.59
SDC1-202ENST00000381150 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.71■□□□□ 0.59
SDC1-202ENST00000381150 TTC37Q6PGP7 1564 aa18.71■□□□□ 0.59
SDC1-202ENST00000381150 CCDC7Q96M83 1385 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms