RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 PLEKHD1A6NEE1 506 aa33.38■■■□□ 2.93
VPS16-201ENST00000380443 ATP10BO94823 1461 aa33.37■■■□□ 2.93
VPS16-201ENST00000380443 GPATCH8Q9UKJ3 1502 aaKnown RBP33.36■■■□□ 2.93
VPS16-201ENST00000380443 UHRF1BP1LA0JNW5 1464 aa33.35■■■□□ 2.93
VPS16-201ENST00000380443 SIN3AQ96ST3 1273 aa33.35■■■□□ 2.93
VPS16-201ENST00000380443 ABCC5O15440 1437 aa33.34■■■□□ 2.93
VPS16-201ENST00000380443 RRP7BPQ9NSQ0 103 aa33.32■■■□□ 2.93
VPS16-201ENST00000380443 ABCC2Q92887 1545 aa33.32■■■□□ 2.92
VPS16-201ENST00000380443 KIF14Q15058 1648 aa33.31■■■□□ 2.92
VPS16-201ENST00000380443 CFDP1Q9UEE9 299 aaPredicted RBP33.31■■■□□ 2.92
VPS16-201ENST00000380443 CHIC2Q9UKJ5 165 aa33.31■■■□□ 2.92
VPS16-201ENST00000380443 NEUROD1Q13562 356 aa33.3■■■□□ 2.92
VPS16-201ENST00000380443 CAMSAP2Q08AD1 1489 aa33.28■■■□□ 2.92
VPS16-201ENST00000380443 ABCC10Q5T3U5 1492 aa33.24■■■□□ 2.91
VPS16-201ENST00000380443 PPP1R15AO75807 674 aaPredicted RBP33.24■■■□□ 2.91
VPS16-201ENST00000380443 TONSLQ96HA7 1378 aa33.21■■■□□ 2.91
VPS16-201ENST00000380443 ZNF644Q9H582 1327 aaPredicted RBP33.2■■■□□ 2.91
VPS16-201ENST00000380443 TRHP20396 242 aaPredicted RBP33.19■■■□□ 2.9
VPS16-201ENST00000380443 ADGRL2O95490 1459 aa33.18■■■□□ 2.9
VPS16-201ENST00000380443 ADGBQ8N7X0 1667 aa33.18■■■□□ 2.9
VPS16-201ENST00000380443 KDM5BQ9UGL1 1544 aa33.18■■■□□ 2.9
VPS16-201ENST00000380443 CDC42BPAQ5VT25 1732 aa33.16■■■□□ 2.9
VPS16-201ENST00000380443 KDM6BO15054 1643 aa33.16■■■□□ 2.9
VPS16-201ENST00000380443 CENPBP07199 599 aaPredicted RBP33.16■■■□□ 2.9
VPS16-201ENST00000380443 TRIM52Q96A61 297 aa33.15■■■□□ 2.9
VPS16-201ENST00000380443 MIER1Q8N108 512 aa33.14■■■□□ 2.9
VPS16-201ENST00000380443 CROCC2H7BZ55 1655 aa33.14■■■□□ 2.9
VPS16-201ENST00000380443 SHANK2Q9UPX8 1470 aa33.11■■■□□ 2.89
VPS16-201ENST00000380443 MPHOSPH9Q99550 1183 aa33.11■■■□□ 2.89
VPS16-201ENST00000380443 NCOA1Q15788 1441 aa33.1■■■□□ 2.89
VPS16-201ENST00000380443 ZCCHC11Q5TAX3 1644 aaKnown RBP33.1■■■□□ 2.89
VPS16-201ENST00000380443 DENND4BO75064 1496 aaPredicted RBP33.08■■■□□ 2.89
VPS16-201ENST00000380443 ANKRD30AQ9BXX3 1397 aa33.06■■■□□ 2.88
VPS16-201ENST00000380443 ASXL2Q76L83 1435 aa33.04■■■□□ 2.88
VPS16-201ENST00000380443 ZNF777Q9ULD5 760 aaPredicted RBP33.03■■■□□ 2.88
VPS16-201ENST00000380443 ARHGEF5Q12774 1597 aa33.02■■■□□ 2.88
VPS16-201ENST00000380443 RSPH4AQ5TD94 716 aa33■■■□□ 2.87
VPS16-201ENST00000380443 PREX2Q70Z35 1606 aa32.97■■■□□ 2.87
VPS16-201ENST00000380443 FAM69CQ0P6D2 419 aa32.93■■■□□ 2.86
VPS16-201ENST00000380443 DIP2BQ9P265 1576 aa32.93■■■□□ 2.86
VPS16-201ENST00000380443 ANKRD30BQ9BXX2 1392 aa32.93■■■□□ 2.86
VPS16-201ENST00000380443 C9orf84Q5VXU9 1444 aa32.92■■■□□ 2.86
VPS16-201ENST00000380443 TSPY4P0CV99 314 aa32.92■■■□□ 2.86
VPS16-201ENST00000380443 TSPY10P0CW01 314 aa32.92■■■□□ 2.86
VPS16-201ENST00000380443 WDR7Q9Y4E6 1490 aa32.92■■■□□ 2.86
VPS16-201ENST00000380443 KIF13AQ9H1H9 1805 aa32.91■■■□□ 2.86
VPS16-201ENST00000380443 CDC42BPBQ9Y5S2 1711 aa32.89■■■□□ 2.86
VPS16-201ENST00000380443 ANKRD50Q9ULJ7 1429 aa32.88■■■□□ 2.85
VPS16-201ENST00000380443 SLC4A1APQ9BWU0 796 aaKnown RBP32.88■■■□□ 2.85
VPS16-201ENST00000380443 MBD5Q9P267 1494 aa32.88■■■□□ 2.85
VPS16-201ENST00000380443 PZPP20742 1482 aa32.86■■■□□ 2.85
VPS16-201ENST00000380443 RPRD2Q5VT52 1461 aaKnown RBP32.86■■■□□ 2.85
VPS16-201ENST00000380443 CCDC141Q6ZP82 1450 aa32.85■■■□□ 2.85
VPS16-201ENST00000380443 PLEKHH2Q8IVE3 1493 aa32.85■■■□□ 2.85
VPS16-201ENST00000380443 SAMD9LQ8IVG5 1584 aa32.84■■■□□ 2.85
VPS16-201ENST00000380443 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.84■■■□□ 2.85
VPS16-201ENST00000380443 GLI2P10070 1586 aa32.82■■■□□ 2.84
VPS16-201ENST00000380443 KIAA1107Q9UPP5 1409 aa32.79■■■□□ 2.84
VPS16-201ENST00000380443 TTC37Q6PGP7 1564 aa32.79■■■□□ 2.84
VPS16-201ENST00000380443 MYO5CQ9NQX4 1742 aa32.78■■■□□ 2.84
VPS16-201ENST00000380443 KDM5DQ9BY66 1539 aa32.78■■■□□ 2.84
VPS16-201ENST00000380443 MAST1Q9Y2H9 1570 aa32.78■■■□□ 2.84
VPS16-201ENST00000380443 KCNH8Q96L42 1107 aa32.77■■■□□ 2.84
VPS16-201ENST00000380443 ARHGAP5Q13017 1502 aa32.76■■■□□ 2.83
VPS16-201ENST00000380443 HNRNPMP52272 730 aaKnown RBP eCLIP32.75■■■□□ 2.83
VPS16-201ENST00000380443 KIF15Q9NS87 1388 aa32.73■■■□□ 2.83
VPS16-201ENST00000380443 SCAF1Q9H7N4 1312 aaKnown RBP32.71■■■□□ 2.83
VPS16-201ENST00000380443 L3MBTL2Q969R5 705 aa32.7■■■□□ 2.83
VPS16-201ENST00000380443 FOXD1Q16676 465 aa32.7■■■□□ 2.82
VPS16-201ENST00000380443 PLCH2O75038 1416 aa32.69■■■□□ 2.82
VPS16-201ENST00000380443 TEX14Q8IWB6 1497 aa32.68■■■□□ 2.82
VPS16-201ENST00000380443 MAP3K4Q9Y6R4 1608 aa32.66■■■□□ 2.82
VPS16-201ENST00000380443 SYCP2Q9BX26 1530 aa32.66■■■□□ 2.82
VPS16-201ENST00000380443 ARAP3Q8WWN8 1544 aa32.65■■■□□ 2.82
VPS16-201ENST00000380443 YTHDC1Q96MU7 727 aaKnown RBP32.64■■■□□ 2.82
VPS16-201ENST00000380443 NUP155O75694 1391 aa32.64■■■□□ 2.82
VPS16-201ENST00000380443 DDX10Q13206 875 aaKnown RBP32.63■■■□□ 2.81
VPS16-201ENST00000380443 TSPOAP1O95153 1857 aa32.63■■■□□ 2.81
VPS16-201ENST00000380443 PKD2Q13563 968 aa32.62■■■□□ 2.81
VPS16-201ENST00000380443 EFCAB2Q5VUJ9 269 aa32.62■■■□□ 2.81
VPS16-201ENST00000380443 PLXNC1O60486 1568 aa32.61■■■□□ 2.81
VPS16-201ENST00000380443 CD109Q6YHK3 1445 aa32.6■■■□□ 2.81
VPS16-201ENST00000380443 ABCA9Q8IUA7 1624 aa32.58■■■□□ 2.81
VPS16-201ENST00000380443 EIF4G2P78344 907 aaKnown RBP eCLIP32.58■■■□□ 2.81
VPS16-201ENST00000380443 PPRC1Q5VV67 1664 aaKnown RBP32.52■■■□□ 2.8
VPS16-201ENST00000380443 HIRIP3Q9BW71 556 aaPredicted RBP32.51■■■□□ 2.79
VPS16-201ENST00000380443 HSPA5P11021 654 aaKnown RBP32.5■■■□□ 2.79
VPS16-201ENST00000380443 ABCC1P33527 1531 aa32.5■■■□□ 2.79
VPS16-201ENST00000380443 UNC13BO14795 1591 aa32.5■■■□□ 2.79
VPS16-201ENST00000380443 DUOX2Q9NRD8 1548 aa32.49■■■□□ 2.79
VPS16-201ENST00000380443 ARHGEF12Q9NZN5 1544 aa32.46■■■□□ 2.79
VPS16-201ENST00000380443 CCER2I3L3R5 266 aa32.46■■■□□ 2.79
VPS16-201ENST00000380443 FAM135AQ9P2D6 1515 aa32.45■■■□□ 2.79
VPS16-201ENST00000380443 ANP32CO43423 234 aa32.45■■■□□ 2.79
VPS16-201ENST00000380443 ERBINQ96RT1 1412 aa32.45■■■□□ 2.78
VPS16-201ENST00000380443 NBPF8Q3BBV2 869 aa32.44■■■□□ 2.78
VPS16-201ENST00000380443 RTEL1-TNFRSF6BF6WH68 1400 aa32.42■■■□□ 2.78
VPS16-201ENST00000380443 GTF3C3Q9Y5Q9 886 aa32.41■■■□□ 2.78
VPS16-201ENST00000380443 UHRF1BP1Q6BDS2 1440 aa32.4■■■□□ 2.78
VPS16-201ENST00000380443 IQGAP3Q86VI3 1631 aa32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms