RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RUFY1Q96T51 708 aa10.93□□□□□ -0.66
LIG3-202ENST00000378526 PES1O00541 588 aaKnown RBP10.93□□□□□ -0.66
LIG3-202ENST00000378526 ZBTB7CA1YPR0 619 aa10.92□□□□□ -0.66
LIG3-202ENST00000378526 TCERG1O14776 1098 aaKnown RBP10.92□□□□□ -0.66
LIG3-202ENST00000378526 PRM3Q9NNZ6 103 aa10.92□□□□□ -0.66
LIG3-202ENST00000378526 KIF16BQ96L93 1317 aa10.92□□□□□ -0.66
LIG3-202ENST00000378526 RRP9O43818 475 aaKnown RBP10.92□□□□□ -0.66
LIG3-202ENST00000378526 CLSTN1O94985 981 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 CAGE1Q8TC20 777 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 FAM43AQ8N2R8 423 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 TPM1P09493 284 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 LEKR1Q6ZMV7 388 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 DIAPH3Q9NSV4 1193 aa10.91□□□□□ -0.66
LIG3-202ENST00000378526 HSP90AB3PQ58FF7 597 aa10.89□□□□□ -0.67
LIG3-202ENST00000378526 GOLGA6L7A0A1B0GV03 622 aa10.89□□□□□ -0.67
LIG3-202ENST00000378526 ERCC4Q92889 916 aaPredicted RBP10.89□□□□□ -0.67
LIG3-202ENST00000378526 NAP1L2Q9ULW6 460 aaPredicted RBP10.89□□□□□ -0.67
LIG3-202ENST00000378526 CFAP53Q96M91 514 aa10.88□□□□□ -0.67
LIG3-202ENST00000378526 KIF3AQ9Y496 699 aa10.87□□□□□ -0.67
LIG3-202ENST00000378526 GOLGA6L19H0YKK7 550 aa10.87□□□□□ -0.67
LIG3-202ENST00000378526 EIF4G2P78344 907 aaKnown RBP eCLIP10.87□□□□□ -0.67
LIG3-202ENST00000378526 KIAA1211Q6ZU35 1233 aa10.87□□□□□ -0.67
LIG3-202ENST00000378526 CCAR2Q8N163 923 aaKnown RBP10.86□□□□□ -0.67
LIG3-202ENST00000378526 NCBP3Q53F19 620 aaKnown RBP10.85□□□□□ -0.67
LIG3-202ENST00000378526 B4GALNT3Q6L9W6 998 aa10.84□□□□□ -0.67
LIG3-202ENST00000378526 HMGN5P82970 282 aaKnown RBP10.84□□□□□ -0.67
LIG3-202ENST00000378526 ATP6V1DQ9Y5K8 247 aa10.84□□□□□ -0.67
LIG3-202ENST00000378526 MYO6Q9UM54 1294 aa10.83□□□□□ -0.68
LIG3-202ENST00000378526 KIAA0754O94854 1291 aa10.83□□□□□ -0.68
LIG3-202ENST00000378526 CC2D1BQ5T0F9 858 aaKnown RBP10.83□□□□□ -0.68
LIG3-202ENST00000378526 IPO7O95373 1038 aaKnown RBP10.83□□□□□ -0.68
LIG3-202ENST00000378526 SPRYD3Q8NCJ5 442 aa10.83□□□□□ -0.68
LIG3-202ENST00000378526 HAP1P54257 671 aaPredicted RBP10.83□□□□□ -0.68
LIG3-202ENST00000378526 CDCA8Q53HL2 280 aa10.83□□□□□ -0.68
LIG3-202ENST00000378526 GIMAP7Q8NHV1 300 aa10.83□□□□□ -0.68
LIG3-202ENST00000378526 OS9Q13438 667 aaPredicted RBP10.82□□□□□ -0.68
LIG3-202ENST00000378526 SLKQ9H2G2 1235 aaPredicted RBP10.81□□□□□ -0.68
LIG3-202ENST00000378526 SSR1P43307 286 aaKnown RBP10.81□□□□□ -0.68
LIG3-202ENST00000378526 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIG3-202ENST00000378526 PLCD4Q9BRC7 762 aa10.81□□□□□ -0.68
LIG3-202ENST00000378526 CHMP4CQ96CF2 233 aa10.81□□□□□ -0.68
LIG3-202ENST00000378526 MNS1Q8NEH6 495 aa10.8□□□□□ -0.68
LIG3-202ENST00000378526 ST18O60284 1047 aa10.79□□□□□ -0.68
LIG3-202ENST00000378526 ZNF592Q92610 1267 aa10.79□□□□□ -0.68
LIG3-202ENST00000378526 GOLGA2Q08379 1002 aa10.78□□□□□ -0.68
LIG3-202ENST00000378526 HOMER1Q86YM7 354 aa10.78□□□□□ -0.68
LIG3-202ENST00000378526 BECN2A8MW95 431 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 FANCIQ9NVI1 1328 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 UBE2Q2Q8WVN8 375 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 DDX11Q96FC9 970 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 GOLGA6L10A6NI86 522 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 HOMEZQ8IX15 550 aa10.77□□□□□ -0.69
LIG3-202ENST00000378526 CCDC39Q9UFE4 941 aa10.76□□□□□ -0.69
LIG3-202ENST00000378526 TPD52L1Q16890 204 aaPredicted RBP10.76□□□□□ -0.69
LIG3-202ENST00000378526 C14orf37Q86TY3 774 aa10.76□□□□□ -0.69
LIG3-202ENST00000378526 CAVIN1Q6NZI2 390 aaKnown RBP10.76□□□□□ -0.69
LIG3-202ENST00000378526 TSHZ2Q9NRE2 1034 aa10.76□□□□□ -0.69
LIG3-202ENST00000378526 CCP110O43303 1012 aa10.76□□□□□ -0.69
LIG3-202ENST00000378526 ANKRD20A12PQ8NF67 263 aa10.76□□□□□ -0.69
LIG3-202ENST00000378526 MAPK8IP3Q9UPT6 1336 aa10.75□□□□□ -0.69
LIG3-202ENST00000378526 KNSTRNQ9Y448 316 aa10.75□□□□□ -0.69
LIG3-202ENST00000378526 FAM107BQ9H098 131 aa10.75□□□□□ -0.69
LIG3-202ENST00000378526 CCDC173Q0VFZ6 552 aa10.74□□□□□ -0.69
LIG3-202ENST00000378526 DHX8Q14562 1220 aaKnown RBP10.74□□□□□ -0.69
LIG3-202ENST00000378526 SETSIPP0DME0 302 aa10.74□□□□□ -0.69
LIG3-202ENST00000378526 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
LIG3-202ENST00000378526 DDX49Q9Y6V7 483 aaKnown RBP10.74□□□□□ -0.69
LIG3-202ENST00000378526 CLASRPQ8N2M8 674 aaKnown RBP10.74□□□□□ -0.69
LIG3-202ENST00000378526 PMFBP1Q8TBY8 1022 aa10.74□□□□□ -0.69
LIG3-202ENST00000378526 HOOK1Q9UJC3 728 aaKnown RBP10.73□□□□□ -0.69
LIG3-202ENST00000378526 SPATA24Q86W54 205 aa10.73□□□□□ -0.69
LIG3-202ENST00000378526 CALCOCO1Q9P1Z2 691 aa10.73□□□□□ -0.69
LIG3-202ENST00000378526 FRAT1Q92837 279 aaPredicted RBP10.73□□□□□ -0.69
LIG3-202ENST00000378526 RSPH4AQ5TD94 716 aa10.73□□□□□ -0.69
LIG3-202ENST00000378526 STAG3Q9UJ98 1225 aa10.73□□□□□ -0.69
LIG3-202ENST00000378526 EIF3JO75822 258 aaKnown RBP10.73□□□□□ -0.69
LIG3-202ENST00000378526 RWDD1Q9H446 243 aaPredicted RBP10.73□□□□□ -0.69
LIG3-202ENST00000378526 CCER2I3L3R5 266 aa10.72□□□□□ -0.69
LIG3-202ENST00000378526 IRX3P78415 501 aaPredicted RBP10.72□□□□□ -0.69
LIG3-202ENST00000378526 PDCL2Q8N4E4 241 aa10.72□□□□□ -0.69
LIG3-202ENST00000378526 NUDCQ9Y266 331 aa10.72□□□□□ -0.69
LIG3-202ENST00000378526 RALBP1Q15311 655 aa10.72□□□□□ -0.69
LIG3-202ENST00000378526 IPO8O15397 1037 aaKnown RBP10.71□□□□□ -0.69
LIG3-202ENST00000378526 CHMP3Q9Y3E7 222 aa10.71□□□□□ -0.69
LIG3-202ENST00000378526 GPATCH3Q96I76 525 aa10.71□□□□□ -0.69
LIG3-202ENST00000378526 ZNF526Q8TF50 670 aaPredicted RBP10.7□□□□□ -0.7
LIG3-202ENST00000378526 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIG3-202ENST00000378526 ESF1Q9H501 851 aaKnown RBP10.7□□□□□ -0.7
LIG3-202ENST00000378526 MRE11P49959 708 aa10.69□□□□□ -0.7
LIG3-202ENST00000378526 IFT57Q9NWB7 429 aa10.69□□□□□ -0.7
LIG3-202ENST00000378526 RASSF8Q8NHQ8 419 aa10.69□□□□□ -0.7
LIG3-202ENST00000378526 SF3A1Q15459 793 aaKnown RBP10.69□□□□□ -0.7
LIG3-202ENST00000378526 ANKRD18AQ8IVF6 992 aa10.68□□□□□ -0.7
LIG3-202ENST00000378526 DNAJC2Q99543 621 aaKnown RBP10.68□□□□□ -0.7
LIG3-202ENST00000378526 ANO8Q9HCE9 1232 aaPredicted RBP10.68□□□□□ -0.7
LIG3-202ENST00000378526 EEA1Q15075 1411 aa10.68□□□□□ -0.7
LIG3-202ENST00000378526 CT47B1P0C2W7 299 aaPredicted RBP10.68□□□□□ -0.7
LIG3-202ENST00000378526 AXDND1Q5T1B0 1012 aaPredicted RBP10.68□□□□□ -0.7
LIG3-202ENST00000378526 PAIP2Q9BPZ3 127 aaKnown RBP10.68□□□□□ -0.7
LIG3-202ENST00000378526 R3HCC1Q9Y3T6 440 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms