RNA–Protein interactions for RNA: ENST00000373198.8

PTPRT-206, Transcript of protein tyrosine phosphatase, receptor type T, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRT, Length 12,746 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRT-206ENST00000373198 CDCA8Q53HL2 280 aa11.48□□□□□ -0.57
PTPRT-206ENST00000373198 SUPT16HQ9Y5B9 1047 aaKnown RBP11.48□□□□□ -0.57
PTPRT-206ENST00000373198 CSB-PGBD3P0DP91 1061 aa11.47□□□□□ -0.57
PTPRT-206ENST00000373198 CHMP4BQ9H444 224 aaKnown RBP11.47□□□□□ -0.57
PTPRT-206ENST00000373198 SAFB2Q14151 953 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPRT-206ENST00000373198 TAF7LQ5H9L4 462 aa11.47□□□□□ -0.57
PTPRT-206ENST00000373198 RTF1Q92541 710 aaKnown RBP11.47□□□□□ -0.57
PTPRT-206ENST00000373198 GORABQ5T7V8 394 aa11.46□□□□□ -0.57
PTPRT-206ENST00000373198 MARCH6O60337 910 aa11.46□□□□□ -0.58
PTPRT-206ENST00000373198 PES1O00541 588 aaKnown RBP11.44□□□□□ -0.58
PTPRT-206ENST00000373198 TPM4P67936 248 aa11.44□□□□□ -0.58
PTPRT-206ENST00000373198 GZF1Q9H116 711 aaPredicted RBP11.44□□□□□ -0.58
PTPRT-206ENST00000373198 CALRP27797 417 aaKnown RBP11.43□□□□□ -0.58
PTPRT-206ENST00000373198 SRPK2P78362 688 aaKnown RBP11.42□□□□□ -0.58
PTPRT-206ENST00000373198 CARD11Q9BXL7 1154 aa11.42□□□□□ -0.58
PTPRT-206ENST00000373198 FRAT2O75474 233 aaPredicted RBP11.42□□□□□ -0.58
PTPRT-206ENST00000373198 SCRIBQ14160 1630 aa11.42□□□□□ -0.58
PTPRT-206ENST00000373198 TCEAL9Q9UHQ7 104 aa11.42□□□□□ -0.58
PTPRT-206ENST00000373198 MS4A1P11836 297 aa11.41□□□□□ -0.58
PTPRT-206ENST00000373198 TOMM22Q9NS69 142 aa11.41□□□□□ -0.58
PTPRT-206ENST00000373198 B4GALNT3Q6L9W6 998 aa11.4□□□□□ -0.58
PTPRT-206ENST00000373198 RAD21O60216 631 aa11.4□□□□□ -0.59
PTPRT-206ENST00000373198 GPATCH3Q96I76 525 aa11.39□□□□□ -0.59
PTPRT-206ENST00000373198 NOL8Q76FK4 1167 aaKnown RBP11.38□□□□□ -0.59
PTPRT-206ENST00000373198 STK26Q9P289 416 aa11.38□□□□□ -0.59
PTPRT-206ENST00000373198 TRIM6-TRIM34B2RNG4 842 aa11.38□□□□□ -0.59
PTPRT-206ENST00000373198 TPM3P06753 285 aa11.38□□□□□ -0.59
PTPRT-206ENST00000373198 PLEKHD1A6NEE1 506 aa11.37□□□□□ -0.59
PTPRT-206ENST00000373198 GTF2E1P29083 439 aaPredicted RBP11.37□□□□□ -0.59
PTPRT-206ENST00000373198 CCDC34Q96HJ3 373 aa11.37□□□□□ -0.59
PTPRT-206ENST00000373198 MSH5O43196 834 aa11.37□□□□□ -0.59
PTPRT-206ENST00000373198 CCAR2Q8N163 923 aaKnown RBP11.37□□□□□ -0.59
PTPRT-206ENST00000373198 HTATSF1O43719 755 aaKnown RBP11.36□□□□□ -0.59
PTPRT-206ENST00000373198 SETQ01105 290 aaPredicted RBP11.36□□□□□ -0.59
PTPRT-206ENST00000373198 TPD52L1Q16890 204 aaPredicted RBP11.36□□□□□ -0.59
PTPRT-206ENST00000373198 KLHL34Q8N239 644 aa11.36□□□□□ -0.59
PTPRT-206ENST00000373198 CWC22Q9HCG8 908 aaKnown RBP11.36□□□□□ -0.59
PTPRT-206ENST00000373198 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.35□□□□□ -0.59
PTPRT-206ENST00000373198 CTDP1Q9Y5B0 961 aaPredicted RBP11.34□□□□□ -0.59
PTPRT-206ENST00000373198 FOXD4L5Q5VV16 416 aaPredicted RBP11.34□□□□□ -0.59
PTPRT-206ENST00000373198 FOXD4L4Q8WXT5 416 aaPredicted RBP11.34□□□□□ -0.59
PTPRT-206ENST00000373198 GBP4Q96PP9 640 aa11.34□□□□□ -0.59
PTPRT-206ENST00000373198 TRIM34Q9BYJ4 488 aa11.33□□□□□ -0.6
PTPRT-206ENST00000373198 MORC1Q86VD1 984 aa11.33□□□□□ -0.6
PTPRT-206ENST00000373198 SLKQ9H2G2 1235 aaPredicted RBP11.33□□□□□ -0.6
PTPRT-206ENST00000373198 ITPRIPQ8IWB1 547 aa11.33□□□□□ -0.6
PTPRT-206ENST00000373198 FOXD4L1Q9NU39 408 aa11.33□□□□□ -0.6
PTPRT-206ENST00000373198 PTMSP20962 102 aa11.32□□□□□ -0.6
PTPRT-206ENST00000373198 FBXW7Q969H0 707 aa11.32□□□□□ -0.6
PTPRT-206ENST00000373198 SYAP1Q96A49 352 aaPredicted RBP11.32□□□□□ -0.6
PTPRT-206ENST00000373198 PPP4R2Q9NY27 417 aa11.32□□□□□ -0.6
PTPRT-206ENST00000373198 USP35Q9P2H5 1018 aa11.31□□□□□ -0.6
PTPRT-206ENST00000373198 RRP12Q5JTH9 1297 aaKnown RBP11.31□□□□□ -0.6
PTPRT-206ENST00000373198 TSR1Q2NL82 804 aaKnown RBP11.3□□□□□ -0.6
PTPRT-206ENST00000373198 SF3A1Q15459 793 aaKnown RBP11.3□□□□□ -0.6
PTPRT-206ENST00000373198 SAMD1Q6SPF0 538 aaPredicted RBP11.3□□□□□ -0.6
PTPRT-206ENST00000373198 CFDP1Q9UEE9 299 aaPredicted RBP11.29□□□□□ -0.6
PTPRT-206ENST00000373198 HSP90AA2PQ14568 343 aaPredicted RBP11.29□□□□□ -0.6
PTPRT-206ENST00000373198 VSIG10Q8N0Z9 540 aa11.28□□□□□ -0.6
PTPRT-206ENST00000373198 HDGFP51858 240 aaKnown RBP11.28□□□□□ -0.6
PTPRT-206ENST00000373198 PCMTD1Q96MG8 357 aaPredicted RBP11.28□□□□□ -0.6
PTPRT-206ENST00000373198 SLC4A10Q6U841 1118 aa11.28□□□□□ -0.6
PTPRT-206ENST00000373198 LTV1Q96GA3 475 aaPredicted RBP11.28□□□□□ -0.6
PTPRT-206ENST00000373198 KANK1Q14678 1352 aa11.27□□□□□ -0.6
PTPRT-206ENST00000373198 PHF23Q9BUL5 403 aaPredicted RBP11.27□□□□□ -0.61
PTPRT-206ENST00000373198 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.61
PTPRT-206ENST00000373198 AKAP17AQ02040 695 aaKnown RBP11.26□□□□□ -0.61
PTPRT-206ENST00000373198 CFAP44Q96MT7 982 aa11.26□□□□□ -0.61
PTPRT-206ENST00000373198 TPM2P07951 284 aa11.26□□□□□ -0.61
PTPRT-206ENST00000373198 IPO8O15397 1037 aaKnown RBP11.26□□□□□ -0.61
PTPRT-206ENST00000373198 MFAP1P55081 439 aaKnown RBP11.26□□□□□ -0.61
PTPRT-206ENST00000373198 H3BQV1 296 aa11.26□□□□□ -0.61
PTPRT-206ENST00000373198 IFFO2Q5TF58 517 aa11.26□□□□□ -0.61
PTPRT-206ENST00000373198 FOXD4L6Q3SYB3 417 aaPredicted RBP11.25□□□□□ -0.61
PTPRT-206ENST00000373198 FOXD4L3Q6VB84 417 aaPredicted RBP11.25□□□□□ -0.61
PTPRT-206ENST00000373198 STK31Q9BXU1 1019 aa11.25□□□□□ -0.61
PTPRT-206ENST00000373198 KIF16BQ96L93 1317 aa11.25□□□□□ -0.61
PTPRT-206ENST00000373198 TMF1P82094 1093 aa11.25□□□□□ -0.61
PTPRT-206ENST00000373198 SPAG9O60271 1321 aaKnown RBP11.25□□□□□ -0.61
PTPRT-206ENST00000373198 CSPP1Q1MSJ5 1256 aa11.25□□□□□ -0.61
PTPRT-206ENST00000373198 MEX3CQ5U5Q3 659 aaKnown RBP11.25□□□□□ -0.61
PTPRT-206ENST00000373198 HDGFL2Q7Z4V5 671 aaPredicted RBP11.24□□□□□ -0.61
PTPRT-206ENST00000373198 PAF1Q8N7H5 531 aa11.24□□□□□ -0.61
PTPRT-206ENST00000373198 RSF1Q96T23 1441 aaPredicted RBP11.24□□□□□ -0.61
PTPRT-206ENST00000373198 CCDC43Q96MW1 224 aaKnown RBP11.24□□□□□ -0.61
PTPRT-206ENST00000373198 ZNF771Q7L3S4 317 aaPredicted RBP11.24□□□□□ -0.61
PTPRT-206ENST00000373198 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.23□□□□□ -0.61
PTPRT-206ENST00000373198 NOL10Q9BSC4 688 aaKnown RBP11.23□□□□□ -0.61
PTPRT-206ENST00000373198 DHX16O60231 1041 aaKnown RBP11.23□□□□□ -0.61
PTPRT-206ENST00000373198 MCTP1Q6DN14 999 aa11.23□□□□□ -0.61
PTPRT-206ENST00000373198 CCDC70Q6NSX1 233 aa11.23□□□□□ -0.61
PTPRT-206ENST00000373198 GOLGA6L3A6NEY3 463 aa11.23□□□□□ -0.61
PTPRT-206ENST00000373198 DCAF11Q8TEB1 546 aa11.22□□□□□ -0.61
PTPRT-206ENST00000373198 ERCC6Q03468 1493 aa11.22□□□□□ -0.61
PTPRT-206ENST00000373198 U2AF1L5P0DN76 240 aaPredicted RBP11.22□□□□□ -0.61
PTPRT-206ENST00000373198 U2AF1Q01081 240 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRT-206ENST00000373198 TPM1P09493 284 aa11.22□□□□□ -0.61
PTPRT-206ENST00000373198 RBM19Q9Y4C8 960 aaKnown RBP11.21□□□□□ -0.61
PTPRT-206ENST00000373198 PHF14O94880 888 aa11.21□□□□□ -0.62
PTPRT-206ENST00000373198 ODF2Q5BJF6 829 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms