RNA–Protein interactions for RNA: ENST00000372417.1

YIPF3-201, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 406 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-201ENST00000372417 MAGI2Q86UL8 1455 aa14.02□□□□□ -0.16
YIPF3-201ENST00000372417 C3P01024 1663 aa14.01□□□□□ -0.17
YIPF3-201ENST00000372417 RAPGEF6Q8TEU7 1601 aa14.01□□□□□ -0.17
YIPF3-201ENST00000372417 CEBPAP49715 358 aaPredicted RBP13.98□□□□□ -0.17
YIPF3-201ENST00000372417 FAM9AQ8IZU1 332 aaPredicted RBP13.98□□□□□ -0.17
YIPF3-201ENST00000372417 UBAP1LF5GYI3 381 aa13.97□□□□□ -0.17
YIPF3-201ENST00000372417 SUPT6HQ7KZ85 1726 aaKnown RBP13.96□□□□□ -0.17
YIPF3-201ENST00000372417 C9orf84Q5VXU9 1444 aa13.95□□□□□ -0.18
YIPF3-201ENST00000372417 NCOA1Q15788 1441 aa13.94□□□□□ -0.18
YIPF3-201ENST00000372417 ATP10AO60312 1499 aa13.93□□□□□ -0.18
YIPF3-201ENST00000372417 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.92□□□□□ -0.18
YIPF3-201ENST00000372417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.92□□□□□ -0.18
YIPF3-201ENST00000372417 HNRNPUL2Q1KMD3 747 aaKnown RBP13.92□□□□□ -0.18
YIPF3-201ENST00000372417 CAMSAP1Q5T5Y3 1602 aa13.9□□□□□ -0.18
YIPF3-201ENST00000372417 PHF23Q9BUL5 403 aaPredicted RBP13.9□□□□□ -0.18
YIPF3-201ENST00000372417 SAMD9Q5K651 1589 aa13.88□□□□□ -0.19
YIPF3-201ENST00000372417 MYO5CQ9NQX4 1742 aa13.87□□□□□ -0.19
YIPF3-201ENST00000372417 NUP153P49790 1475 aaKnown RBP13.87□□□□□ -0.19
YIPF3-201ENST00000372417 HSPA1LP34931 641 aa13.86□□□□□ -0.19
YIPF3-201ENST00000372417 P3H3Q8IVL6 736 aa13.86□□□□□ -0.19
YIPF3-201ENST00000372417 ZNF335Q9H4Z2 1342 aaPredicted RBP13.86□□□□□ -0.19
YIPF3-201ENST00000372417 SCAPERQ9BY12 1400 aa13.85□□□□□ -0.19
YIPF3-201ENST00000372417 TRAPPC8Q9Y2L5 1435 aa13.84□□□□□ -0.19
YIPF3-201ENST00000372417 ZNF142P52746 1687 aaPredicted RBP13.84□□□□□ -0.19
YIPF3-201ENST00000372417 SCAF1Q9H7N4 1312 aaKnown RBP13.84□□□□□ -0.19
YIPF3-201ENST00000372417 REREQ9P2R6 1566 aa13.83□□□□□ -0.19
YIPF3-201ENST00000372417 DIP2CQ9Y2E4 1556 aa13.83□□□□□ -0.2
YIPF3-201ENST00000372417 MROH2AA6NES4 1674 aa13.82□□□□□ -0.2
YIPF3-201ENST00000372417 PLEKHD1A6NEE1 506 aa13.81□□□□□ -0.2
YIPF3-201ENST00000372417 ABCA6Q8N139 1617 aa13.8□□□□□ -0.2
YIPF3-201ENST00000372417 KDM5CP41229 1560 aa13.79□□□□□ -0.2
YIPF3-201ENST00000372417 PIP4K2BP78356 416 aa13.79□□□□□ -0.2
YIPF3-201ENST00000372417 AGLP35573 1532 aa13.79□□□□□ -0.2
YIPF3-201ENST00000372417 MYO3AQ8NEV4 1616 aa13.79□□□□□ -0.2
YIPF3-201ENST00000372417 ESF1Q9H501 851 aaKnown RBP13.78□□□□□ -0.2
YIPF3-201ENST00000372417 ZNF518AQ6AHZ1 1483 aa13.78□□□□□ -0.2
YIPF3-201ENST00000372417 POLR1AO95602 1720 aaPredicted RBP13.78□□□□□ -0.2
YIPF3-201ENST00000372417 NCKAP5LQ9HCH0 1330 aa13.77□□□□□ -0.21
YIPF3-201ENST00000372417 PLA2R1Q13018 1463 aa13.76□□□□□ -0.21
YIPF3-201ENST00000372417 PLCH2O75038 1416 aa13.76□□□□□ -0.21
YIPF3-201ENST00000372417 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
YIPF3-201ENST00000372417 CNTLNQ9NXG0 1405 aa13.75□□□□□ -0.21
YIPF3-201ENST00000372417 TOM1O60784 492 aa13.75□□□□□ -0.21
YIPF3-201ENST00000372417 NPATQ14207 1427 aa13.74□□□□□ -0.21
YIPF3-201ENST00000372417 CPS1P31327 1500 aa13.74□□□□□ -0.21
YIPF3-201ENST00000372417 TCOF1Q13428 1488 aaKnown RBP13.74□□□□□ -0.21
YIPF3-201ENST00000372417 PKD2Q13563 968 aa13.73□□□□□ -0.21
YIPF3-201ENST00000372417 CEP170BQ9Y4F5 1589 aaPredicted RBP13.73□□□□□ -0.21
YIPF3-201ENST00000372417 MYT1LQ9UL68 1186 aa13.71□□□□□ -0.21
YIPF3-201ENST00000372417 CLTCQ00610 1675 aaKnown RBP13.71□□□□□ -0.21
YIPF3-201ENST00000372417 SETD1AO15047 1707 aaKnown RBP13.7□□□□□ -0.22
YIPF3-201ENST00000372417 PPP6R1Q9UPN7 881 aa13.7□□□□□ -0.22
YIPF3-201ENST00000372417 ALKQ9UM73 1620 aa13.69□□□□□ -0.22
YIPF3-201ENST00000372417 CDK13Q14004 1512 aaKnown RBP13.69□□□□□ -0.22
YIPF3-201ENST00000372417 PTPRKQ15262 1439 aa13.68□□□□□ -0.22
YIPF3-201ENST00000372417 EFCAB2Q5VUJ9 269 aa13.68□□□□□ -0.22
YIPF3-201ENST00000372417 ITSN2Q9NZM3 1697 aa13.68□□□□□ -0.22
YIPF3-201ENST00000372417 KIDINS220Q9ULH0 1771 aa13.68□□□□□ -0.22
YIPF3-201ENST00000372417 CDC42BPBQ9Y5S2 1711 aa13.67□□□□□ -0.22
YIPF3-201ENST00000372417 ARHGAP5Q13017 1502 aa13.67□□□□□ -0.22
YIPF3-201ENST00000372417 MLH3Q9UHC1 1453 aa13.67□□□□□ -0.22
YIPF3-201ENST00000372417 KIF14Q15058 1648 aa13.66□□□□□ -0.22
YIPF3-201ENST00000372417 AFAP1Q8N556 730 aa13.65□□□□□ -0.22
YIPF3-201ENST00000372417 SHANK2Q9UPX8 1470 aa13.65□□□□□ -0.22
YIPF3-201ENST00000372417 DNMT1P26358 1616 aaKnown RBP13.64□□□□□ -0.23
YIPF3-201ENST00000372417 NEURL4Q96JN8 1562 aa13.63□□□□□ -0.23
YIPF3-201ENST00000372417 RGS17Q9UGC6 210 aaPredicted RBP13.63□□□□□ -0.23
YIPF3-201ENST00000372417 RNF17Q9BXT8 1623 aaKnown RBP13.63□□□□□ -0.23
YIPF3-201ENST00000372417 ZMYM3Q14202 1370 aa13.62□□□□□ -0.23
YIPF3-201ENST00000372417 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
YIPF3-201ENST00000372417 VWDEQ8N2E2 1590 aa13.61□□□□□ -0.23
YIPF3-201ENST00000372417 ABCC1P33527 1531 aa13.59□□□□□ -0.23
YIPF3-201ENST00000372417 STRCP1A6NGW2 1772 aa13.59□□□□□ -0.23
YIPF3-201ENST00000372417 PREX2Q70Z35 1606 aa13.59□□□□□ -0.23
YIPF3-201ENST00000372417 SYNMO15061 1565 aa13.58□□□□□ -0.23
YIPF3-201ENST00000372417 A2ML1A8K2U0 1454 aa13.58□□□□□ -0.24
YIPF3-201ENST00000372417 RANGAP1P46060 587 aaPredicted RBP13.56□□□□□ -0.24
YIPF3-201ENST00000372417 IQGAP1P46940 1657 aa13.54□□□□□ -0.24
YIPF3-201ENST00000372417 POTEAQ6S8J7 498 aa13.54□□□□□ -0.24
YIPF3-201ENST00000372417 CDC42BPAQ5VT25 1732 aa13.53□□□□□ -0.24
YIPF3-201ENST00000372417 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
YIPF3-201ENST00000372417 DEPDC5O75140 1603 aa13.52□□□□□ -0.25
YIPF3-201ENST00000372417 XIRP1Q702N8 1843 aaKnown RBP13.52□□□□□ -0.25
YIPF3-201ENST00000372417 PLXNC1O60486 1568 aa13.51□□□□□ -0.25
YIPF3-201ENST00000372417 SAMD9LQ8IVG5 1584 aa13.51□□□□□ -0.25
YIPF3-201ENST00000372417 CLIP1P30622 1438 aa13.5□□□□□ -0.25
YIPF3-201ENST00000372417 LRRC7Q96NW7 1537 aa13.49□□□□□ -0.25
YIPF3-201ENST00000372417 TROQ12816 1431 aaPredicted RBP13.49□□□□□ -0.25
YIPF3-201ENST00000372417 CDK11AQ9UQ88 783 aaPredicted RBP13.49□□□□□ -0.25
YIPF3-201ENST00000372417 ADGBQ8N7X0 1667 aa13.48□□□□□ -0.25
YIPF3-201ENST00000372417 INO80Q9ULG1 1556 aaPredicted RBP13.46□□□□□ -0.25
YIPF3-201ENST00000372417 ATP7AQ04656 1500 aa13.46□□□□□ -0.25
YIPF3-201ENST00000372417 MED14O60244 1454 aa13.46□□□□□ -0.25
YIPF3-201ENST00000372417 NPHP4O75161 1426 aaPredicted RBP13.46□□□□□ -0.26
YIPF3-201ENST00000372417 SRCAPQ6ZRS2 3230 aa13.45□□□□□ -0.26
YIPF3-201ENST00000372417 ANKLE2Q86XL3 938 aa13.44□□□□□ -0.26
YIPF3-201ENST00000372417 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
YIPF3-201ENST00000372417 A2MP01023 1474 aa13.43□□□□□ -0.26
YIPF3-201ENST00000372417 ZC3H13Q5T200 1668 aaKnown RBP13.43□□□□□ -0.26
YIPF3-201ENST00000372417 SYCP2Q9BX26 1530 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms