RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 POGZQ7Z3K3 1410 aa22.2■■□□□ 1.15
TNFRSF1A-202ENST00000366159 MAGI2Q86UL8 1455 aa22.2■■□□□ 1.14
TNFRSF1A-202ENST00000366159 BCORL1Q5H9F3 1711 aa22.18■■□□□ 1.14
TNFRSF1A-202ENST00000366159 YEATS2Q9ULM3 1422 aa22.17■■□□□ 1.14
TNFRSF1A-202ENST00000366159 CDC42BPBQ9Y5S2 1711 aa22.17■■□□□ 1.14
TNFRSF1A-202ENST00000366159 ZFYVE16Q7Z3T8 1539 aa22.16■■□□□ 1.14
TNFRSF1A-202ENST00000366159 ARHGAP5Q13017 1502 aa22.15■■□□□ 1.14
TNFRSF1A-202ENST00000366159 SIGLEC1Q9BZZ2 1709 aa22.14■■□□□ 1.13
TNFRSF1A-202ENST00000366159 PREX2Q70Z35 1606 aa22.13■■□□□ 1.13
TNFRSF1A-202ENST00000366159 PTPRMP28827 1452 aa22.13■■□□□ 1.13
TNFRSF1A-202ENST00000366159 HECW2Q9P2P5 1572 aa22.12■■□□□ 1.13
TNFRSF1A-202ENST00000366159 KDM5CP41229 1560 aa22.11■■□□□ 1.13
TNFRSF1A-202ENST00000366159 ZNF518AQ6AHZ1 1483 aa22.1■■□□□ 1.13
TNFRSF1A-202ENST00000366159 MADDQ8WXG6 1647 aa22.1■■□□□ 1.13
TNFRSF1A-202ENST00000366159 ARID4BQ4LE39 1312 aaPredicted RBP22.09■■□□□ 1.13
TNFRSF1A-202ENST00000366159 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
TNFRSF1A-202ENST00000366159 CDC42BPAQ5VT25 1732 aa22.08■■□□□ 1.13
TNFRSF1A-202ENST00000366159 AFAP1Q8N556 730 aa22.07■■□□□ 1.12
TNFRSF1A-202ENST00000366159 ARHGEF12Q9NZN5 1544 aa22.07■■□□□ 1.12
TNFRSF1A-202ENST00000366159 ATP10AO60312 1499 aa22.07■■□□□ 1.12
TNFRSF1A-202ENST00000366159 ABCC1P33527 1531 aa22.06■■□□□ 1.12
TNFRSF1A-202ENST00000366159 GPATCH8Q9UKJ3 1502 aaKnown RBP22.04■■□□□ 1.12
TNFRSF1A-202ENST00000366159 MLH3Q9UHC1 1453 aa22.03■■□□□ 1.12
TNFRSF1A-202ENST00000366159 C9orf84Q5VXU9 1444 aa22.02■■□□□ 1.12
TNFRSF1A-202ENST00000366159 TRAPPC8Q9Y2L5 1435 aa22.02■■□□□ 1.12
TNFRSF1A-202ENST00000366159 ITSN2Q9NZM3 1697 aa22.01■■□□□ 1.11
TNFRSF1A-202ENST00000366159 RIMS1Q86UR5 1692 aaKnown RBP22■■□□□ 1.11
TNFRSF1A-202ENST00000366159 LOC105371045A0A1W2PR82 267 aa21.99■■□□□ 1.11
TNFRSF1A-202ENST00000366159 SAMD9LQ8IVG5 1584 aa21.98■■□□□ 1.11
TNFRSF1A-202ENST00000366159 DIP2CQ9Y2E4 1556 aa21.98■■□□□ 1.11
TNFRSF1A-202ENST00000366159 REREQ9P2R6 1566 aa21.97■■□□□ 1.11
TNFRSF1A-202ENST00000366159 MTUS2Q5JR59 1369 aa21.96■■□□□ 1.11
TNFRSF1A-202ENST00000366159 ABCA6Q8N139 1617 aa21.96■■□□□ 1.11
TNFRSF1A-202ENST00000366159 CCNB3Q8WWL7 1395 aa21.93■■□□□ 1.1
TNFRSF1A-202ENST00000366159 KIDINS220Q9ULH0 1771 aa21.93■■□□□ 1.1
TNFRSF1A-202ENST00000366159 EHBP1L1Q8N3D4 1523 aa21.93■■□□□ 1.1
TNFRSF1A-202ENST00000366159 KIAA1107Q9UPP5 1409 aa21.93■■□□□ 1.1
TNFRSF1A-202ENST00000366159 MLECQ14165 292 aa21.92■■□□□ 1.1
TNFRSF1A-202ENST00000366159 FER1L4A9Z1Z3 1794 aa21.92■■□□□ 1.1
TNFRSF1A-202ENST00000366159 SYCP2Q9BX26 1530 aa21.92■■□□□ 1.1
TNFRSF1A-202ENST00000366159 CFDP1Q9UEE9 299 aaPredicted RBP21.91■■□□□ 1.1
TNFRSF1A-202ENST00000366159 ZNF777Q9ULD5 760 aaPredicted RBP21.91■■□□□ 1.1
TNFRSF1A-202ENST00000366159 TIAM1Q13009 1591 aa21.9■■□□□ 1.1
TNFRSF1A-202ENST00000366159 LMTK3Q96Q04 1460 aa21.9■■□□□ 1.1
TNFRSF1A-202ENST00000366159 AGLP35573 1532 aa21.9■■□□□ 1.1
TNFRSF1A-202ENST00000366159 PLEKHH2Q8IVE3 1493 aa21.88■■□□□ 1.09
TNFRSF1A-202ENST00000366159 HNRNPMP52272 730 aaKnown RBP eCLIP21.88■■□□□ 1.09
TNFRSF1A-202ENST00000366159 VPS8Q8N3P4 1428 aa21.87■■□□□ 1.09
TNFRSF1A-202ENST00000366159 MYT1LQ9UL68 1186 aa21.86■■□□□ 1.09
TNFRSF1A-202ENST00000366159 MBD5Q9P267 1494 aa21.83■■□□□ 1.08
TNFRSF1A-202ENST00000366159 SPAG9O60271 1321 aaKnown RBP21.82■■□□□ 1.08
TNFRSF1A-202ENST00000366159 ZNF644Q9H582 1327 aaPredicted RBP21.82■■□□□ 1.08
TNFRSF1A-202ENST00000366159 INO80Q9ULG1 1556 aaPredicted RBP21.82■■□□□ 1.08
TNFRSF1A-202ENST00000366159 NCOA2Q15596 1464 aa21.81■■□□□ 1.08
TNFRSF1A-202ENST00000366159 ATP7AQ04656 1500 aa21.8■■□□□ 1.08
TNFRSF1A-202ENST00000366159 SUPT6HQ7KZ85 1726 aaKnown RBP21.8■■□□□ 1.08
TNFRSF1A-202ENST00000366159 MAP3K1Q13233 1512 aa21.78■■□□□ 1.08
TNFRSF1A-202ENST00000366159 LRRC9Q6ZRR7 1453 aa21.78■■□□□ 1.08
TNFRSF1A-202ENST00000366159 CEBPAP49715 358 aaPredicted RBP21.78■■□□□ 1.08
TNFRSF1A-202ENST00000366159 PLPPR3Q6T4P5 718 aa21.77■■□□□ 1.07
TNFRSF1A-202ENST00000366159 PLXNC1O60486 1568 aa21.76■■□□□ 1.07
TNFRSF1A-202ENST00000366159 RTEL1-TNFRSF6BF6WH68 1400 aa21.73■■□□□ 1.07
TNFRSF1A-202ENST00000366159 HSPA2P54652 639 aa21.73■■□□□ 1.07
TNFRSF1A-202ENST00000366159 A2MP01023 1474 aa21.73■■□□□ 1.07
TNFRSF1A-202ENST00000366159 C3P01024 1663 aa21.73■■□□□ 1.07
TNFRSF1A-202ENST00000366159 KANK4Q5T7N3 995 aaPredicted RBP21.72■■□□□ 1.07
TNFRSF1A-202ENST00000366159 PREX1Q8TCU6 1659 aa21.72■■□□□ 1.07
TNFRSF1A-202ENST00000366159 CAMSAP2Q08AD1 1489 aa21.71■■□□□ 1.07
TNFRSF1A-202ENST00000366159 CNTLNQ9NXG0 1405 aa21.7■■□□□ 1.06
TNFRSF1A-202ENST00000366159 ILDR1Q86SU0 546 aaPredicted RBP21.69■■□□□ 1.06
TNFRSF1A-202ENST00000366159 ADGBQ8N7X0 1667 aa21.69■■□□□ 1.06
TNFRSF1A-202ENST00000366159 SETD1BQ9UPS6 1966 aaKnown RBP21.69■■□□□ 1.06
TNFRSF1A-202ENST00000366159 RSPH4AQ5TD94 716 aa21.68■■□□□ 1.06
TNFRSF1A-202ENST00000366159 CCDC141Q6ZP82 1450 aa21.67■■□□□ 1.06
TNFRSF1A-202ENST00000366159 MROH2AA6NES4 1674 aa21.66■■□□□ 1.06
TNFRSF1A-202ENST00000366159 ARHGEF5Q12774 1597 aa21.66■■□□□ 1.06
TNFRSF1A-202ENST00000366159 ESF1Q9H501 851 aaKnown RBP21.65■■□□□ 1.06
TNFRSF1A-202ENST00000366159 DHX29Q7Z478 1369 aaKnown RBP21.64■■□□□ 1.05
TNFRSF1A-202ENST00000366159 ZMYM3Q14202 1370 aa21.62■■□□□ 1.05
TNFRSF1A-202ENST00000366159 UHRF1BP1Q6BDS2 1440 aa21.62■■□□□ 1.05
TNFRSF1A-202ENST00000366159 MIA2Q96PC5 1412 aa21.61■■□□□ 1.05
TNFRSF1A-202ENST00000366159 PPP6R1Q9UPN7 881 aa21.6■■□□□ 1.05
TNFRSF1A-202ENST00000366159 NPATQ14207 1427 aa21.59■■□□□ 1.05
TNFRSF1A-202ENST00000366159 MYOM3Q5VTT5 1437 aa21.59■■□□□ 1.05
TNFRSF1A-202ENST00000366159 CLTCQ00610 1675 aaKnown RBP21.59■■□□□ 1.05
TNFRSF1A-202ENST00000366159 GGT6Q6P531 493 aa21.58■■□□□ 1.05
TNFRSF1A-202ENST00000366159 STRCQ7RTU9 1775 aa21.58■■□□□ 1.05
TNFRSF1A-202ENST00000366159 MAST1Q9Y2H9 1570 aa21.55■■□□□ 1.04
TNFRSF1A-202ENST00000366159 TSPY4P0CV99 314 aa21.55■■□□□ 1.04
TNFRSF1A-202ENST00000366159 TSPY10P0CW01 314 aa21.55■■□□□ 1.04
TNFRSF1A-202ENST00000366159 PTPRKQ15262 1439 aa21.54■■□□□ 1.04
TNFRSF1A-202ENST00000366159 KIF3BO15066 747 aa21.51■■□□□ 1.03
TNFRSF1A-202ENST00000366159 FAM135AQ9P2D6 1515 aa21.5■■□□□ 1.03
TNFRSF1A-202ENST00000366159 APLP2Q06481 763 aa21.49■■□□□ 1.03
TNFRSF1A-202ENST00000366159 FBXO41Q8TF61 875 aa21.49■■□□□ 1.03
TNFRSF1A-202ENST00000366159 DMRT2Q9Y5R5 561 aa21.48■■□□□ 1.03
TNFRSF1A-202ENST00000366159 NCOA1Q15788 1441 aa21.46■■□□□ 1.03
TNFRSF1A-202ENST00000366159 PTPRTO14522 1441 aa21.46■■□□□ 1.03
TNFRSF1A-202ENST00000366159 ZNF142P52746 1687 aaPredicted RBP21.45■■□□□ 1.02
TNFRSF1A-202ENST00000366159 MYO3AQ8NEV4 1616 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms