RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 EFCAB3Q8N7B9 438 aa11.15□□□□□ -0.62
CLCN3-202ENST00000360642 RBM26Q5T8P6 1007 aaKnown RBP11.15□□□□□ -0.62
CLCN3-202ENST00000360642 BIVM-ERCC5R4GMW8 1640 aa11.14□□□□□ -0.63
CLCN3-202ENST00000360642 CHRM1P11229 460 aaPredicted RBP11.14□□□□□ -0.63
CLCN3-202ENST00000360642 CABP2Q9NPB3 220 aa11.14□□□□□ -0.63
CLCN3-202ENST00000360642 NCKAP5LQ9HCH0 1330 aa11.13□□□□□ -0.63
CLCN3-202ENST00000360642 ARID3CA6NKF2 412 aa11.13□□□□□ -0.63
CLCN3-202ENST00000360642 RYDENQ9NUL5 291 aaKnown RBP11.12□□□□□ -0.63
CLCN3-202ENST00000360642 MLLT3P42568 568 aaPredicted RBP11.11□□□□□ -0.63
CLCN3-202ENST00000360642 LARP6Q9BRS8 491 aaKnown RBP11.11□□□□□ -0.63
CLCN3-202ENST00000360642 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
CLCN3-202ENST00000360642 CACNB1Q02641 598 aaPredicted RBP11.11□□□□□ -0.63
CLCN3-202ENST00000360642 TESPA1A2RU30 521 aaPredicted RBP11.1□□□□□ -0.63
CLCN3-202ENST00000360642 SGIP1Q9BQI5 828 aa11.09□□□□□ -0.63
CLCN3-202ENST00000360642 RAPGEF2Q9Y4G8 1499 aa11.09□□□□□ -0.63
CLCN3-202ENST00000360642 PSEN1P49768 467 aa11.09□□□□□ -0.63
CLCN3-202ENST00000360642 CLIP1P30622 1438 aa11.08□□□□□ -0.64
CLCN3-202ENST00000360642 CFTRP13569 1480 aa11.08□□□□□ -0.64
CLCN3-202ENST00000360642 PDAP1Q13442 181 aaKnown RBP11.07□□□□□ -0.64
CLCN3-202ENST00000360642 IFNL1Q8IU54 200 aa11.07□□□□□ -0.64
CLCN3-202ENST00000360642 ARHGEF1Q92888 912 aaKnown RBP11.06□□□□□ -0.64
CLCN3-202ENST00000360642 ZMYND10O75800 440 aa11.06□□□□□ -0.64
CLCN3-202ENST00000360642 CUX1P39880 1505 aa11.06□□□□□ -0.64
CLCN3-202ENST00000360642 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
CLCN3-202ENST00000360642 C1orf115Q9H7X2 142 aa11.05□□□□□ -0.64
CLCN3-202ENST00000360642 VPS8Q8N3P4 1428 aa11.05□□□□□ -0.64
CLCN3-202ENST00000360642 PRXQ9BXM0 1461 aa11.05□□□□□ -0.64
CLCN3-202ENST00000360642 ERICH3Q5RHP9 1530 aa11.04□□□□□ -0.64
CLCN3-202ENST00000360642 FBXO22Q8NEZ5 403 aa11.03□□□□□ -0.64
CLCN3-202ENST00000360642 ERICH6Q7L0X2 663 aa11.02□□□□□ -0.65
CLCN3-202ENST00000360642 ZNF467Q7Z7K2 595 aaPredicted RBP11.02□□□□□ -0.65
CLCN3-202ENST00000360642 PRDM2Q13029 1718 aa11□□□□□ -0.65
CLCN3-202ENST00000360642 CCDC61Q9Y6R9 512 aa10.99□□□□□ -0.65
CLCN3-202ENST00000360642 MAP3K13O43283 966 aa10.99□□□□□ -0.65
CLCN3-202ENST00000360642 RANGAP1P46060 587 aaPredicted RBP10.99□□□□□ -0.65
CLCN3-202ENST00000360642 AKT1S1Q96B36 256 aa10.99□□□□□ -0.65
CLCN3-202ENST00000360642 KRI1Q8N9T8 703 aaKnown RBP10.98□□□□□ -0.65
CLCN3-202ENST00000360642 MS4A4AQ96JQ5 239 aa10.97□□□□□ -0.65
CLCN3-202ENST00000360642 KIF27Q86VH2 1401 aa10.97□□□□□ -0.65
CLCN3-202ENST00000360642 MKRN3Q13064 507 aaKnown RBP10.97□□□□□ -0.65
CLCN3-202ENST00000360642 KDM4CQ9H3R0 1056 aa10.97□□□□□ -0.65
CLCN3-202ENST00000360642 FAM117AQ9C073 453 aa10.96□□□□□ -0.66
CLCN3-202ENST00000360642 CADPSQ9ULU8 1353 aa10.94□□□□□ -0.66
CLCN3-202ENST00000360642 ARAP1Q96P48 1450 aa10.94□□□□□ -0.66
CLCN3-202ENST00000360642 FARP1Q9Y4F1 1045 aaPredicted RBP10.93□□□□□ -0.66
CLCN3-202ENST00000360642 BARGINQ6ZT62 677 aa10.91□□□□□ -0.66
CLCN3-202ENST00000360642 GPIHBP1Q8IV16 184 aa10.91□□□□□ -0.66
CLCN3-202ENST00000360642 DDX27Q96GQ7 796 aaKnown RBP10.91□□□□□ -0.66
CLCN3-202ENST00000360642 TRPC6Q9Y210 931 aa10.9□□□□□ -0.66
CLCN3-202ENST00000360642 CC2D2AQ9P2K1 1620 aa10.9□□□□□ -0.66
CLCN3-202ENST00000360642 DPYSL4O14531 572 aa10.9□□□□□ -0.67
CLCN3-202ENST00000360642 IGF1RP08069 1367 aa10.88□□□□□ -0.67
CLCN3-202ENST00000360642 PDE4DQ08499 809 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 ZMYND15Q9H091 742 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 CUX2O14529 1486 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 APBB1O00213 710 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 ARHGAP35Q9NRY4 1499 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 NLRP6P59044 892 aa10.86□□□□□ -0.67
CLCN3-202ENST00000360642 RBM42Q9BTD8 480 aaKnown RBP10.85□□□□□ -0.67
CLCN3-202ENST00000360642 FGD5Q6ZNL6 1462 aa10.85□□□□□ -0.67
CLCN3-202ENST00000360642 TRIM66O15016 1216 aa10.84□□□□□ -0.67
CLCN3-202ENST00000360642 CRISPLD2Q9H0B8 497 aa10.84□□□□□ -0.67
CLCN3-202ENST00000360642 PRKAR2AP13861 404 aaKnown RBP10.84□□□□□ -0.67
CLCN3-202ENST00000360642 AK7Q96M32 723 aa10.83□□□□□ -0.68
CLCN3-202ENST00000360642 EMILIN3Q9NT22 766 aa10.83□□□□□ -0.68
CLCN3-202ENST00000360642 KANK4Q5T7N3 995 aaPredicted RBP10.83□□□□□ -0.68
CLCN3-202ENST00000360642 FECHP22830 423 aa10.82□□□□□ -0.68
CLCN3-202ENST00000360642 DIEXFQ68CQ4 756 aaKnown RBP10.82□□□□□ -0.68
CLCN3-202ENST00000360642 FANCD2Q9BXW9 1451 aa10.82□□□□□ -0.68
CLCN3-202ENST00000360642 RRBP1Q9P2E9 1410 aaKnown RBP10.81□□□□□ -0.68
CLCN3-202ENST00000360642 CARMIL1Q5VZK9 1371 aa10.81□□□□□ -0.68
CLCN3-202ENST00000360642 CLUAP1Q96AJ1 413 aa10.8□□□□□ -0.68
CLCN3-202ENST00000360642 ZNF316A6NFI3 1004 aaPredicted RBP10.8□□□□□ -0.68
CLCN3-202ENST00000360642 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
CLCN3-202ENST00000360642 PHF12Q96QT6 1004 aa10.8□□□□□ -0.68
CLCN3-202ENST00000360642 RSPH6AQ9H0K4 717 aa10.79□□□□□ -0.68
CLCN3-202ENST00000360642 KIF12Q96FN5 646 aa10.79□□□□□ -0.68
CLCN3-202ENST00000360642 DNMBPQ6XZF7 1577 aa10.78□□□□□ -0.68
CLCN3-202ENST00000360642 PLEKHG3A1L390 1219 aa10.78□□□□□ -0.68
CLCN3-202ENST00000360642 GRXCR2A6NFK2 248 aa10.78□□□□□ -0.68
CLCN3-202ENST00000360642 PDE4AP27815 886 aa10.78□□□□□ -0.68
CLCN3-202ENST00000360642 MAP3K1Q13233 1512 aa10.77□□□□□ -0.68
CLCN3-202ENST00000360642 DPY19L2Q6NUT2 758 aa10.77□□□□□ -0.69
CLCN3-202ENST00000360642 ABCA10Q8WWZ4 1543 aa10.76□□□□□ -0.69
CLCN3-202ENST00000360642 CLSPNQ9HAW4 1339 aa10.76□□□□□ -0.69
CLCN3-202ENST00000360642 TOPBP1Q92547 1522 aa10.75□□□□□ -0.69
CLCN3-202ENST00000360642 SMYD5Q6GMV2 418 aa10.75□□□□□ -0.69
CLCN3-202ENST00000360642 POLA1P09884 1462 aaPredicted RBP10.74□□□□□ -0.69
CLCN3-202ENST00000360642 DHX57Q6P158 1386 aaKnown RBP10.74□□□□□ -0.69
CLCN3-202ENST00000360642 DSG2Q14126 1118 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 MFSD10Q14728 455 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 PPP1R15BQ5SWA1 713 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 NESP48681 1621 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 RAD54L2Q9Y4B4 1467 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 TIAM1Q13009 1591 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 NUTM2FA1L443 756 aa10.73□□□□□ -0.69
CLCN3-202ENST00000360642 CCNB3Q8WWL7 1395 aa10.72□□□□□ -0.69
CLCN3-202ENST00000360642 GPR37O15354 613 aa10.72□□□□□ -0.69
CLCN3-202ENST00000360642 PARP9Q8IXQ6 854 aa10.72□□□□□ -0.69
CLCN3-202ENST00000360642 CCDC102AQ96A19 550 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms