RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 RBM19Q9Y4C8 960 aaKnown RBP11.64□□□□□ -0.55
VPS13A-203ENST00000360280 HSP90B1P14625 803 aaKnown RBP11.64□□□□□ -0.55
VPS13A-203ENST00000360280 KIF3AQ9Y496 699 aa11.64□□□□□ -0.55
VPS13A-203ENST00000360280 CALD1Q05682 793 aaKnown RBP11.64□□□□□ -0.55
VPS13A-203ENST00000360280 TSR1Q2NL82 804 aaKnown RBP11.64□□□□□ -0.55
VPS13A-203ENST00000360280 NOM1Q5C9Z4 860 aaKnown RBP11.63□□□□□ -0.55
VPS13A-203ENST00000360280 IPO8O15397 1037 aaKnown RBP11.63□□□□□ -0.55
VPS13A-203ENST00000360280 ZNF771Q7L3S4 317 aaPredicted RBP11.63□□□□□ -0.55
VPS13A-203ENST00000360280 GPATCH3Q96I76 525 aa11.63□□□□□ -0.55
VPS13A-203ENST00000360280 TEX35Q5T0J7 233 aa11.63□□□□□ -0.55
VPS13A-203ENST00000360280 DDX11L8A8MPP1 907 aa11.62□□□□□ -0.55
VPS13A-203ENST00000360280 RRP12Q5JTH9 1297 aaKnown RBP11.62□□□□□ -0.55
VPS13A-203ENST00000360280 U2SURPO15042 1029 aaKnown RBP11.61□□□□□ -0.55
VPS13A-203ENST00000360280 EEA1Q15075 1411 aa11.61□□□□□ -0.55
VPS13A-203ENST00000360280 TCERG1O14776 1098 aaKnown RBP11.61□□□□□ -0.55
VPS13A-203ENST00000360280 RASSF8Q8NHQ8 419 aa11.61□□□□□ -0.55
VPS13A-203ENST00000360280 TPM1P09493 284 aa11.6□□□□□ -0.55
VPS13A-203ENST00000360280 SLKQ9H2G2 1235 aaPredicted RBP11.6□□□□□ -0.55
VPS13A-203ENST00000360280 RRP7BPQ9NSQ0 103 aa11.59□□□□□ -0.55
VPS13A-203ENST00000360280 POGKQ9P215 609 aa11.59□□□□□ -0.55
VPS13A-203ENST00000360280 RWDD1Q9H446 243 aaPredicted RBP11.59□□□□□ -0.55
VPS13A-203ENST00000360280 CHMP4AQ9BY43 222 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 KIF16BQ96L93 1317 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 ATP6V1DQ9Y5K8 247 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 TPM2P07951 284 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 CEP162Q5TB80 1403 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 PMFBP1Q8TBY8 1022 aa11.58□□□□□ -0.56
VPS13A-203ENST00000360280 KTN1Q86UP2 1357 aaKnown RBP11.58□□□□□ -0.56
VPS13A-203ENST00000360280 CC2D1BQ5T0F9 858 aaKnown RBP11.57□□□□□ -0.56
VPS13A-203ENST00000360280 IPO9Q96P70 1041 aaKnown RBP11.57□□□□□ -0.56
VPS13A-203ENST00000360280 RGL3Q3MIN7 710 aa11.57□□□□□ -0.56
VPS13A-203ENST00000360280 GOLGA6L19H0YKK7 550 aa11.57□□□□□ -0.56
VPS13A-203ENST00000360280 HMMRO75330 724 aa11.57□□□□□ -0.56
VPS13A-203ENST00000360280 RTF1Q92541 710 aaKnown RBP11.56□□□□□ -0.56
VPS13A-203ENST00000360280 ST18O60284 1047 aa11.56□□□□□ -0.56
VPS13A-203ENST00000360280 PDE4CQ08493 712 aa11.56□□□□□ -0.56
VPS13A-203ENST00000360280 VSIG10Q8N0Z9 540 aa11.56□□□□□ -0.56
VPS13A-203ENST00000360280 PATL2C9JE40 543 aaKnown RBP11.56□□□□□ -0.56
VPS13A-203ENST00000360280 SKOR2Q2VWA4 1001 aaPredicted RBP11.55□□□□□ -0.56
VPS13A-203ENST00000360280 HDAC5Q9UQL6 1122 aa11.55□□□□□ -0.56
VPS13A-203ENST00000360280 TPD52L1Q16890 204 aaPredicted RBP11.55□□□□□ -0.56
VPS13A-203ENST00000360280 TMF1P82094 1093 aa11.55□□□□□ -0.56
VPS13A-203ENST00000360280 CHMP4CQ96CF2 233 aa11.54□□□□□ -0.56
VPS13A-203ENST00000360280 SENP3-EIF4A1A0A087X0R7 540 aa11.54□□□□□ -0.56
VPS13A-203ENST00000360280 CCER2I3L3R5 266 aa11.54□□□□□ -0.56
VPS13A-203ENST00000360280 KANK1Q14678 1352 aa11.54□□□□□ -0.56
VPS13A-203ENST00000360280 CDR1P51861 262 aa11.53□□□□□ -0.56
VPS13A-203ENST00000360280 PES1O00541 588 aaKnown RBP11.53□□□□□ -0.56
VPS13A-203ENST00000360280 CREBRFQ8IUR6 639 aa11.53□□□□□ -0.56
VPS13A-203ENST00000360280 IPO7O95373 1038 aaKnown RBP11.53□□□□□ -0.56
VPS13A-203ENST00000360280 LMOD2Q6P5Q4 547 aa11.53□□□□□ -0.56
VPS13A-203ENST00000360280 CCAR2Q8N163 923 aaKnown RBP11.53□□□□□ -0.56
VPS13A-203ENST00000360280 ITPRIPQ8IWB1 547 aa11.52□□□□□ -0.56
VPS13A-203ENST00000360280 APPP05067 770 aa11.52□□□□□ -0.57
VPS13A-203ENST00000360280 SPAG9O60271 1321 aaKnown RBP11.52□□□□□ -0.57
VPS13A-203ENST00000360280 RUFY1Q96T51 708 aa11.52□□□□□ -0.57
VPS13A-203ENST00000360280 TMX4Q9H1E5 349 aaPredicted RBP11.52□□□□□ -0.57
VPS13A-203ENST00000360280 SENP3Q9H4L4 574 aaPredicted RBP11.51□□□□□ -0.57
VPS13A-203ENST00000360280 GORABQ5T7V8 394 aa11.51□□□□□ -0.57
VPS13A-203ENST00000360280 CWC15Q9P013 229 aaKnown RBP11.51□□□□□ -0.57
VPS13A-203ENST00000360280 AK7Q96M32 723 aa11.51□□□□□ -0.57
VPS13A-203ENST00000360280 TRIM6-TRIM34B2RNG4 842 aa11.51□□□□□ -0.57
VPS13A-203ENST00000360280 CEP164Q9UPV0 1460 aa11.51□□□□□ -0.57
VPS13A-203ENST00000360280 ACBD3Q9H3P7 528 aa11.5□□□□□ -0.57
VPS13A-203ENST00000360280 CCDC191Q8NCU4 936 aa11.5□□□□□ -0.57
VPS13A-203ENST00000360280 MTERF4Q7Z6M4 381 aaKnown RBP11.5□□□□□ -0.57
VPS13A-203ENST00000360280 MFAP1P55081 439 aaKnown RBP11.5□□□□□ -0.57
VPS13A-203ENST00000360280 APBB1O00213 710 aa11.49□□□□□ -0.57
VPS13A-203ENST00000360280 SF3A1Q15459 793 aaKnown RBP11.49□□□□□ -0.57
VPS13A-203ENST00000360280 EIF3AQ14152 1382 aaKnown RBP11.49□□□□□ -0.57
VPS13A-203ENST00000360280 MAP7D2Q96T17 732 aa11.49□□□□□ -0.57
VPS13A-203ENST00000360280 ARGLU1Q9NWB6 273 aaPredicted RBP11.49□□□□□ -0.57
VPS13A-203ENST00000360280 BECN2A8MW95 431 aa11.49□□□□□ -0.57
VPS13A-203ENST00000360280 DCTN1Q14203 1278 aa11.49□□□□□ -0.57
VPS13A-203ENST00000360280 GSE1Q14687 1217 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 ANKRD20A12PQ8NF67 263 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 RCAN3Q9UKA8 241 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 CHMP7Q8WUX9 453 aaPredicted RBP11.48□□□□□ -0.57
VPS13A-203ENST00000360280 CFDP1Q9UEE9 299 aaPredicted RBP11.48□□□□□ -0.57
VPS13A-203ENST00000360280 PLEKHD1A6NEE1 506 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 PHLDB1Q86UU1 1377 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 MORC1Q86VD1 984 aa11.48□□□□□ -0.57
VPS13A-203ENST00000360280 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.48□□□□□ -0.57
VPS13A-203ENST00000360280 HSP90B2PQ58FF3 399 aa11.47□□□□□ -0.57
VPS13A-203ENST00000360280 H3BQV1 296 aa11.47□□□□□ -0.57
VPS13A-203ENST00000360280 IFFO2Q5TF58 517 aa11.47□□□□□ -0.57
VPS13A-203ENST00000360280 HOOK1Q9UJC3 728 aaKnown RBP11.47□□□□□ -0.57
VPS13A-203ENST00000360280 FHAD1B1AJZ9 1412 aa11.47□□□□□ -0.57
VPS13A-203ENST00000360280 RDXP35241 583 aaKnown RBP11.46□□□□□ -0.58
VPS13A-203ENST00000360280 CCDC66A2RUB6 948 aa11.45□□□□□ -0.58
VPS13A-203ENST00000360280 SRPK2P78362 688 aaKnown RBP11.44□□□□□ -0.58
VPS13A-203ENST00000360280 DDX49Q9Y6V7 483 aaKnown RBP11.44□□□□□ -0.58
VPS13A-203ENST00000360280 STK31Q9BXU1 1019 aa11.44□□□□□ -0.58
VPS13A-203ENST00000360280 VPS53Q5VIR6 699 aa11.44□□□□□ -0.58
VPS13A-203ENST00000360280 HDGFP51858 240 aaKnown RBP11.44□□□□□ -0.58
VPS13A-203ENST00000360280 MARCH6O60337 910 aa11.44□□□□□ -0.58
VPS13A-203ENST00000360280 ZNF592Q92610 1267 aa11.43□□□□□ -0.58
VPS13A-203ENST00000360280 H0YHG0 523 aa11.43□□□□□ -0.58
VPS13A-203ENST00000360280 HOMER1Q86YM7 354 aa11.43□□□□□ -0.58
VPS13A-203ENST00000360280 TCEAL9Q9UHQ7 104 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms