RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KDM5BQ9UGL1 1544 aa13.37□□□□□ -0.27
UPF2-202ENST00000357604 NCOA2Q15596 1464 aa13.37□□□□□ -0.27
UPF2-202ENST00000357604 MYOM3Q5VTT5 1437 aa13.37□□□□□ -0.27
UPF2-202ENST00000357604 ZCCHC11Q5TAX3 1644 aaKnown RBP13.37□□□□□ -0.27
UPF2-202ENST00000357604 DENND4BO75064 1496 aaPredicted RBP13.36□□□□□ -0.27
UPF2-202ENST00000357604 ITSN2Q9NZM3 1697 aa13.36□□□□□ -0.27
UPF2-202ENST00000357604 AKNAQ7Z591 1439 aa13.35□□□□□ -0.27
UPF2-202ENST00000357604 MIA2Q96PC5 1412 aa13.35□□□□□ -0.27
UPF2-202ENST00000357604 ADGRL1O94910 1474 aa13.34□□□□□ -0.27
UPF2-202ENST00000357604 HNRNPMP52272 730 aaKnown RBP eCLIP13.34□□□□□ -0.273e-6■□□□□ 9.1
UPF2-202ENST00000357604 MAPKBP1O60336 1514 aa13.34□□□□□ -0.27
UPF2-202ENST00000357604 FANCAO15360 1455 aa13.33□□□□□ -0.27
UPF2-202ENST00000357604 HDGFP51858 240 aaKnown RBP13.33□□□□□ -0.27
UPF2-202ENST00000357604 CCER1Q8TC90 406 aaPredicted RBP13.33□□□□□ -0.28
UPF2-202ENST00000357604 ABCC10Q5T3U5 1492 aa13.33□□□□□ -0.28
UPF2-202ENST00000357604 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
UPF2-202ENST00000357604 ERCC6L2Q5T890 1561 aa13.32□□□□□ -0.28
UPF2-202ENST00000357604 MLECQ14165 292 aa13.32□□□□□ -0.28
UPF2-202ENST00000357604 PLCH2O75038 1416 aa13.31□□□□□ -0.28
UPF2-202ENST00000357604 NEO1Q92859 1461 aa13.31□□□□□ -0.28
UPF2-202ENST00000357604 PCGF6Q9BYE7 350 aa13.31□□□□□ -0.28
UPF2-202ENST00000357604 KANK4Q5T7N3 995 aaPredicted RBP13.29□□□□□ -0.28
UPF2-202ENST00000357604 ADCY10Q96PN6 1610 aa13.29□□□□□ -0.28
UPF2-202ENST00000357604 CFAP43Q8NDM7 1665 aa13.28□□□□□ -0.28
UPF2-202ENST00000357604 RRP7BPQ9NSQ0 103 aa13.28□□□□□ -0.28
UPF2-202ENST00000357604 ZEB1P37275 1124 aaPredicted RBP13.26□□□□□ -0.29
UPF2-202ENST00000357604 FGD6Q6ZV73 1430 aa13.26□□□□□ -0.29
UPF2-202ENST00000357604 CHGAP10645 457 aaKnown RBP13.26□□□□□ -0.29
UPF2-202ENST00000357604 GGT6Q6P531 493 aa13.26□□□□□ -0.29
UPF2-202ENST00000357604 ZNF518AQ6AHZ1 1483 aa13.25□□□□□ -0.29
UPF2-202ENST00000357604 PPP1R15AO75807 674 aaPredicted RBP13.25□□□□□ -0.29
UPF2-202ENST00000357604 CCDC141Q6ZP82 1450 aa13.24□□□□□ -0.29
UPF2-202ENST00000357604 KIF3BO15066 747 aa13.23□□□□□ -0.29
UPF2-202ENST00000357604 GLI2P10070 1586 aa13.23□□□□□ -0.29
UPF2-202ENST00000357604 WASHC2CQ9Y4E1 1318 aa13.23□□□□□ -0.29
UPF2-202ENST00000357604 PPP6R1Q9UPN7 881 aa13.23□□□□□ -0.29
UPF2-202ENST00000357604 CAMSAP2Q08AD1 1489 aa13.22□□□□□ -0.29
UPF2-202ENST00000357604 MYO5CQ9NQX4 1742 aa13.21□□□□□ -0.29
UPF2-202ENST00000357604 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
UPF2-202ENST00000357604 MAGI3Q5TCQ9 1506 aa13.21□□□□□ -0.29
UPF2-202ENST00000357604 KIAA1107Q9UPP5 1409 aa13.21□□□□□ -0.29
UPF2-202ENST00000357604 SLC4A1APQ9BWU0 796 aaKnown RBP13.2□□□□□ -0.3
UPF2-202ENST00000357604 KDM6BO15054 1643 aa13.19□□□□□ -0.3
UPF2-202ENST00000357604 C9orf84Q5VXU9 1444 aa13.18□□□□□ -0.3
UPF2-202ENST00000357604 ARAP3Q8WWN8 1544 aa13.17□□□□□ -0.3
UPF2-202ENST00000357604 PTPN23Q9H3S7 1636 aa13.16□□□□□ -0.3
UPF2-202ENST00000357604 RAPGEF3O95398 923 aa13.16□□□□□ -0.3
UPF2-202ENST00000357604 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.16□□□□□ -0.3
UPF2-202ENST00000357604 KIF15Q9NS87 1388 aa13.16□□□□□ -0.3
UPF2-202ENST00000357604 GPATCH8Q9UKJ3 1502 aaKnown RBP13.16□□□□□ -0.3
UPF2-202ENST00000357604 ZFYVE16Q7Z3T8 1539 aa13.15□□□□□ -0.3
UPF2-202ENST00000357604 EID1Q9Y6B2 187 aa13.14□□□□□ -0.31
UPF2-202ENST00000357604 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.14□□□□□ -0.31
UPF2-202ENST00000357604 MAGI2Q86UL8 1455 aa13.14□□□□□ -0.31
UPF2-202ENST00000357604 SETD5Q9C0A6 1442 aa13.14□□□□□ -0.31
UPF2-202ENST00000357604 AFAP1Q8N556 730 aa13.13□□□□□ -0.31
UPF2-202ENST00000357604 DAPK1P53355 1430 aa13.13□□□□□ -0.31
UPF2-202ENST00000357604 ABCA9Q8IUA7 1624 aa13.13□□□□□ -0.31
UPF2-202ENST00000357604 RTEL1-TNFRSF6BF6WH68 1400 aa13.12□□□□□ -0.31
UPF2-202ENST00000357604 DIP2BQ9P265 1576 aa13.12□□□□□ -0.31
UPF2-202ENST00000357604 NUP155O75694 1391 aa13.11□□□□□ -0.31
UPF2-202ENST00000357604 TSPOAP1O95153 1857 aa13.11□□□□□ -0.31
UPF2-202ENST00000357604 ATP10AO60312 1499 aa13.11□□□□□ -0.31
UPF2-202ENST00000357604 CNTLNQ9NXG0 1405 aa13.11□□□□□ -0.31
UPF2-202ENST00000357604 PREX2Q70Z35 1606 aa13.1□□□□□ -0.31
UPF2-202ENST00000357604 SYCP2Q9BX26 1530 aa13.1□□□□□ -0.31
UPF2-202ENST00000357604 ROCK1Q13464 1354 aa13.09□□□□□ -0.31
UPF2-202ENST00000357604 SHANK2Q9UPX8 1470 aa13.08□□□□□ -0.32
UPF2-202ENST00000357604 ZNF644Q9H582 1327 aaPredicted RBP13.08□□□□□ -0.32
UPF2-202ENST00000357604 DUOX2Q9NRD8 1548 aa13.08□□□□□ -0.32
UPF2-202ENST00000357604 RRBP1Q9P2E9 1410 aaKnown RBP13.07□□□□□ -0.32
UPF2-202ENST00000357604 NEUROD1Q13562 356 aa13.07□□□□□ -0.32
UPF2-202ENST00000357604 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
UPF2-202ENST00000357604 TTC37Q6PGP7 1564 aa13.07□□□□□ -0.32
UPF2-202ENST00000357604 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.07□□□□□ -0.32
UPF2-202ENST00000357604 ERBINQ96RT1 1412 aa13.06□□□□□ -0.32
UPF2-202ENST00000357604 DHX29Q7Z478 1369 aaKnown RBP13.05□□□□□ -0.32
UPF2-202ENST00000357604 TONSLQ96HA7 1378 aa13.05□□□□□ -0.32
UPF2-202ENST00000357604 A2MP01023 1474 aa13.05□□□□□ -0.32
UPF2-202ENST00000357604 TCOF1Q13428 1488 aaKnown RBP13.05□□□□□ -0.32
UPF2-202ENST00000357604 ARHGEF5Q12774 1597 aa13.05□□□□□ -0.32
UPF2-202ENST00000357604 ATP7AQ04656 1500 aa13.04□□□□□ -0.32
UPF2-202ENST00000357604 HECW2Q9P2P5 1572 aa13.03□□□□□ -0.32
UPF2-202ENST00000357604 HRCP23327 699 aa13.02□□□□□ -0.32
UPF2-202ENST00000357604 C14orf37Q86TY3 774 aa13.02□□□□□ -0.32
UPF2-202ENST00000357604 MAP3K4Q9Y6R4 1608 aa13.02□□□□□ -0.32
UPF2-202ENST00000357604 ABCC1P33527 1531 aa13.02□□□□□ -0.33
UPF2-202ENST00000357604 DMRT2Q9Y5R5 561 aa13.01□□□□□ -0.33
UPF2-202ENST00000357604 ABCC5O15440 1437 aa13□□□□□ -0.33
UPF2-202ENST00000357604 PKD2Q13563 968 aa13□□□□□ -0.33
UPF2-202ENST00000357604 THEMISQ8N1K5 641 aaPredicted RBP12.99□□□□□ -0.33
UPF2-202ENST00000357604 TRAPPC8Q9Y2L5 1435 aa12.99□□□□□ -0.33
UPF2-202ENST00000357604 MLH3Q9UHC1 1453 aa12.98□□□□□ -0.33
UPF2-202ENST00000357604 DNMT1P26358 1616 aaKnown RBP12.97□□□□□ -0.33
UPF2-202ENST00000357604 MPHOSPH9Q99550 1183 aa12.96□□□□□ -0.34
UPF2-202ENST00000357604 SAMD9LQ8IVG5 1584 aa12.96□□□□□ -0.34
UPF2-202ENST00000357604 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.34
UPF2-202ENST00000357604 CCDC144AA2RUR9 1427 aa12.95□□□□□ -0.34
UPF2-202ENST00000357604 SLC52A1Q9NWF4 448 aa12.94□□□□□ -0.34
UPF2-202ENST00000357604 RAB3GAP2Q9H2M9 1393 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms