RNA–Protein interactions for RNA: ENST00000357235.5

CDC42SE1-201, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE1, Length 3,045 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-201ENST00000357235 SNAPC4Q5SXM2 1469 aa11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 URB2Q14146 1524 aaKnown RBP11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 ZBED9Q6R2W3 1325 aa11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 SLC24A1O60721 1099 aa11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 THOC2Q8NI27 1593 aaKnown RBP11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 KIF7Q2M1P5 1343 aa11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 TOPBP1Q92547 1522 aa11.13□□□□□ -0.63
CDC42SE1-201ENST00000357235 ABCA10Q8WWZ4 1543 aa11.12□□□□□ -0.63
CDC42SE1-201ENST00000357235 PAK3O75914 559 aaPredicted RBP11.11□□□□□ -0.63
CDC42SE1-201ENST00000357235 AKNAQ7Z591 1439 aa11.1□□□□□ -0.63
CDC42SE1-201ENST00000357235 ZNF777Q9ULD5 760 aaPredicted RBP11.1□□□□□ -0.63
CDC42SE1-201ENST00000357235 ZNF644Q9H582 1327 aaPredicted RBP11.1□□□□□ -0.63
CDC42SE1-201ENST00000357235 KDM5BQ9UGL1 1544 aa11.1□□□□□ -0.63
CDC42SE1-201ENST00000357235 NPM2Q86SE8 214 aaKnown RBP11.09□□□□□ -0.63
CDC42SE1-201ENST00000357235 WDR62O43379 1518 aa11.09□□□□□ -0.63
CDC42SE1-201ENST00000357235 ANP32AP39687 249 aaKnown RBP11.08□□□□□ -0.64
CDC42SE1-201ENST00000357235 TMC1Q8TDI8 760 aa11.08□□□□□ -0.64
CDC42SE1-201ENST00000357235 DNMBPQ6XZF7 1577 aa11.08□□□□□ -0.64
CDC42SE1-201ENST00000357235 PRDM2Q13029 1718 aa11.07□□□□□ -0.64
CDC42SE1-201ENST00000357235 NCOA1Q15788 1441 aa11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 SUPT6HQ7KZ85 1726 aaKnown RBP11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 DENND4BO75064 1496 aaPredicted RBP11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 GRIN2BQ13224 1484 aa11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 GAPVD1Q14C86 1478 aa11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 KDM6BO15054 1643 aa11.06□□□□□ -0.64
CDC42SE1-201ENST00000357235 KDM2AQ9Y2K7 1162 aa11.05□□□□□ -0.64
CDC42SE1-201ENST00000357235 MAGI3Q5TCQ9 1506 aa11.05□□□□□ -0.64
CDC42SE1-201ENST00000357235 EHBP1L1Q8N3D4 1523 aa11.05□□□□□ -0.64
CDC42SE1-201ENST00000357235 CTTNBP2Q8WZ74 1663 aa11.04□□□□□ -0.64
CDC42SE1-201ENST00000357235 NUDCQ9Y266 331 aa11.04□□□□□ -0.64
CDC42SE1-201ENST00000357235 ZBTB47Q9UFB7 747 aaPredicted RBP11.03□□□□□ -0.64
CDC42SE1-201ENST00000357235 CUL7Q14999 1698 aa11.03□□□□□ -0.64
CDC42SE1-201ENST00000357235 CDK13Q14004 1512 aaKnown RBP11.03□□□□□ -0.64
CDC42SE1-201ENST00000357235 UGGT2Q9NYU1 1516 aa11.03□□□□□ -0.64
CDC42SE1-201ENST00000357235 ANKRD30BQ9BXX2 1392 aa11.02□□□□□ -0.65
CDC42SE1-201ENST00000357235 PODXL2Q9NZ53 605 aa11.01□□□□□ -0.65
CDC42SE1-201ENST00000357235 PLEKHG5O94827 1062 aa11.01□□□□□ -0.65
CDC42SE1-201ENST00000357235 PKD2Q13563 968 aa11.01□□□□□ -0.65
CDC42SE1-201ENST00000357235 LRRIQ1Q96JM4 1722 aa11□□□□□ -0.65
CDC42SE1-201ENST00000357235 USP47Q96K76 1375 aa11□□□□□ -0.65
CDC42SE1-201ENST00000357235 GLIPR1L2Q4G1C9 344 aa11□□□□□ -0.65
CDC42SE1-201ENST00000357235 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
CDC42SE1-201ENST00000357235 IPO9Q96P70 1041 aaKnown RBP10.99□□□□□ -0.65
CDC42SE1-201ENST00000357235 CFDP1Q9UEE9 299 aaPredicted RBP10.99□□□□□ -0.65
CDC42SE1-201ENST00000357235 DAXXQ9UER7 740 aaPredicted RBP10.99□□□□□ -0.65
CDC42SE1-201ENST00000357235 EPRSP07814 1512 aaKnown RBP10.99□□□□□ -0.65
CDC42SE1-201ENST00000357235 ZNF608Q9ULD9 1512 aaPredicted RBP10.99□□□□□ -0.65
CDC42SE1-201ENST00000357235 RPRD2Q5VT52 1461 aaKnown RBP10.98□□□□□ -0.65
CDC42SE1-201ENST00000357235 IFT140Q96RY7 1462 aa10.98□□□□□ -0.65
CDC42SE1-201ENST00000357235 FBLN2P98095 1184 aa10.98□□□□□ -0.65
CDC42SE1-201ENST00000357235 LAS1LQ9Y4W2 734 aaKnown RBP10.98□□□□□ -0.65
CDC42SE1-201ENST00000357235 SAMD9Q5K651 1589 aa10.97□□□□□ -0.65
CDC42SE1-201ENST00000357235 SMG6Q86US8 1419 aaKnown RBP10.97□□□□□ -0.65
CDC42SE1-201ENST00000357235 DAPK1P53355 1430 aa10.96□□□□□ -0.65
CDC42SE1-201ENST00000357235 HECW1Q76N89 1606 aa10.96□□□□□ -0.65
CDC42SE1-201ENST00000357235 PNISRQ8TF01 805 aaKnown RBP10.96□□□□□ -0.65
CDC42SE1-201ENST00000357235 EXOC6Q8TAG9 804 aa10.96□□□□□ -0.66
CDC42SE1-201ENST00000357235 TCOF1Q13428 1488 aaKnown RBP10.96□□□□□ -0.66
CDC42SE1-201ENST00000357235 ST20-MTHFSA0A0A6YYL1 179 aa10.95□□□□□ -0.66
CDC42SE1-201ENST00000357235 MIA2Q96PC5 1412 aa10.95□□□□□ -0.66
CDC42SE1-201ENST00000357235 RSPH6AQ9H0K4 717 aa10.95□□□□□ -0.66
CDC42SE1-201ENST00000357235 ABCC5O15440 1437 aa10.95□□□□□ -0.66
CDC42SE1-201ENST00000357235 SPATA31E1Q6ZUB1 1445 aa10.95□□□□□ -0.66
CDC42SE1-201ENST00000357235 TEX14Q8IWB6 1497 aa10.94□□□□□ -0.66
CDC42SE1-201ENST00000357235 DCAF11Q8TEB1 546 aa10.94□□□□□ -0.66
CDC42SE1-201ENST00000357235 DHX29Q7Z478 1369 aaKnown RBP10.94□□□□□ -0.66
CDC42SE1-201ENST00000357235 ARHGEF11O15085 1522 aa10.93□□□□□ -0.66
CDC42SE1-201ENST00000357235 USP35Q9P2H5 1018 aa10.93□□□□□ -0.66
CDC42SE1-201ENST00000357235 WASHC2CQ9Y4E1 1318 aa10.93□□□□□ -0.66
CDC42SE1-201ENST00000357235 BRPF3Q9ULD4 1205 aa10.93□□□□□ -0.66
CDC42SE1-201ENST00000357235 GCC2Q8IWJ2 1684 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 PLIN1O60240 522 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 RGL3Q3MIN7 710 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 SKAP1Q86WV1 359 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 NEFMP07197 916 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 RCAN3Q9UKA8 241 aa10.92□□□□□ -0.66
CDC42SE1-201ENST00000357235 RRP1P56182 461 aaKnown RBP10.91□□□□□ -0.66
CDC42SE1-201ENST00000357235 ZMYND15Q9H091 742 aa10.91□□□□□ -0.66
CDC42SE1-201ENST00000357235 NUP155O75694 1391 aa10.9□□□□□ -0.66
CDC42SE1-201ENST00000357235 CC2D1BQ5T0F9 858 aaKnown RBP10.9□□□□□ -0.66
CDC42SE1-201ENST00000357235 VSIG10Q8N0Z9 540 aa10.9□□□□□ -0.66
CDC42SE1-201ENST00000357235 CDCA7LQ96GN5 454 aa10.9□□□□□ -0.66
CDC42SE1-201ENST00000357235 ROCK1Q13464 1354 aa10.9□□□□□ -0.67
CDC42SE1-201ENST00000357235 ABCA5Q8WWZ7 1642 aa10.89□□□□□ -0.67
CDC42SE1-201ENST00000357235 PRG4Q92954 1404 aaPredicted RBP10.89□□□□□ -0.67
CDC42SE1-201ENST00000357235 OSCARQ8IYS5 282 aa10.89□□□□□ -0.67
CDC42SE1-201ENST00000357235 CHMP7Q8WUX9 453 aaPredicted RBP10.89□□□□□ -0.67
CDC42SE1-201ENST00000357235 PDE4AP27815 886 aa10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 RNF123Q5XPI4 1314 aa10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 TARBP1Q13395 1621 aaKnown RBP10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 DNAJC5Q9H3Z4 198 aa10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 MYBBP1AQ9BQG0 1328 aaKnown RBP10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 IQGAP2Q13576 1575 aa10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 KIF15Q9NS87 1388 aa10.88□□□□□ -0.67
CDC42SE1-201ENST00000357235 KIAA1107Q9UPP5 1409 aa10.86□□□□□ -0.67
CDC42SE1-201ENST00000357235 TSPY4P0CV99 314 aa10.86□□□□□ -0.67
CDC42SE1-201ENST00000357235 TSPY10P0CW01 314 aa10.86□□□□□ -0.67
CDC42SE1-201ENST00000357235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.86□□□□□ -0.674e-8■■□□□ 14.5
CDC42SE1-201ENST00000357235 PZPP20742 1482 aa10.86□□□□□ -0.67
CDC42SE1-201ENST00000357235 ROCK2O75116 1388 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms