RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 LRRIQ1Q96JM4 1722 aa12.99□□□□□ -0.33
SMG6-202ENST00000354901 MYOM3Q5VTT5 1437 aa12.98□□□□□ -0.33
SMG6-202ENST00000354901 CARMIL2Q6F5E8 1435 aa12.98□□□□□ -0.33
SMG6-202ENST00000354901 SUPT6HQ7KZ85 1726 aaKnown RBP12.98□□□□□ -0.33
SMG6-202ENST00000354901 RTL5Q5HYW3 569 aaPredicted RBP12.97□□□□□ -0.33
SMG6-202ENST00000354901 NAIPQ13075 1403 aa12.96□□□□□ -0.33
SMG6-202ENST00000354901 HFM1A2PYH4 1435 aa12.96□□□□□ -0.33
SMG6-202ENST00000354901 UACAQ9BZF9 1416 aa12.96□□□□□ -0.33
SMG6-202ENST00000354901 RAPGEF6Q8TEU7 1601 aa12.95□□□□□ -0.34
SMG6-202ENST00000354901 EPRSP07814 1512 aaKnown RBP12.94□□□□□ -0.34
SMG6-202ENST00000354901 CNGB1Q14028 1251 aaPredicted RBP12.93□□□□□ -0.34
SMG6-202ENST00000354901 PTPN23Q9H3S7 1636 aa12.93□□□□□ -0.34
SMG6-202ENST00000354901 ARHGEF11O15085 1522 aa12.93□□□□□ -0.34
SMG6-202ENST00000354901 CHD1O14646 1710 aa12.92□□□□□ -0.34
SMG6-202ENST00000354901 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
SMG6-202ENST00000354901 MAGI3Q5TCQ9 1506 aa12.91□□□□□ -0.34
SMG6-202ENST00000354901 MYT1LQ9UL68 1186 aa12.91□□□□□ -0.34
SMG6-202ENST00000354901 CDK13Q14004 1512 aaKnown RBP12.9□□□□□ -0.34
SMG6-202ENST00000354901 FANCIQ9NVI1 1328 aa12.9□□□□□ -0.34
SMG6-202ENST00000354901 HNRNPUQ00839 825 aaKnown RBP eCLIP12.9□□□□□ -0.34
SMG6-202ENST00000354901 CCER2I3L3R5 266 aa12.9□□□□□ -0.34
SMG6-202ENST00000354901 SHROOM2Q13796 1616 aa12.89□□□□□ -0.35
SMG6-202ENST00000354901 ZNF644Q9H582 1327 aaPredicted RBP12.89□□□□□ -0.35
SMG6-202ENST00000354901 JPH4Q96JJ6 628 aa12.89□□□□□ -0.35
SMG6-202ENST00000354901 PAK3O75914 559 aaPredicted RBP12.88□□□□□ -0.35
SMG6-202ENST00000354901 MPHOSPH9Q99550 1183 aa12.88□□□□□ -0.35
SMG6-202ENST00000354901 L3MBTL2Q969R5 705 aa12.87□□□□□ -0.35
SMG6-202ENST00000354901 FBLN2P98095 1184 aa12.87□□□□□ -0.35
SMG6-202ENST00000354901 NOP58Q9Y2X3 529 aaKnown RBP12.87□□□□□ -0.35
SMG6-202ENST00000354901 NUP153P49790 1475 aaKnown RBP12.86□□□□□ -0.35
SMG6-202ENST00000354901 ZNF777Q9ULD5 760 aaPredicted RBP12.86□□□□□ -0.35
SMG6-202ENST00000354901 ABCA8O94911 1581 aa12.86□□□□□ -0.35
SMG6-202ENST00000354901 WASHC2AQ641Q2 1341 aa12.85□□□□□ -0.35
SMG6-202ENST00000354901 EIF4G2P78344 907 aaKnown RBP eCLIP12.85□□□□□ -0.35
SMG6-202ENST00000354901 UBE2Q2Q8WVN8 375 aa12.85□□□□□ -0.35
SMG6-202ENST00000354901 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
SMG6-202ENST00000354901 MIA2Q96PC5 1412 aa12.85□□□□□ -0.35
SMG6-202ENST00000354901 TCOF1Q13428 1488 aaKnown RBP12.85□□□□□ -0.35
SMG6-202ENST00000354901 ADCY10Q96PN6 1610 aa12.84□□□□□ -0.35
SMG6-202ENST00000354901 ZNF326Q5BKZ1 582 aaKnown RBP12.84□□□□□ -0.35
SMG6-202ENST00000354901 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
SMG6-202ENST00000354901 KDM6BO15054 1643 aa12.83□□□□□ -0.36
SMG6-202ENST00000354901 CCDC184Q52MB2 194 aa12.82□□□□□ -0.36
SMG6-202ENST00000354901 B4GALNT3Q6L9W6 998 aa12.82□□□□□ -0.36
SMG6-202ENST00000354901 FAM9BQ8IZU0 186 aa12.82□□□□□ -0.36
SMG6-202ENST00000354901 C11orf95C9JLR9 678 aaPredicted RBP12.81□□□□□ -0.36
SMG6-202ENST00000354901 CLASP1Q7Z460 1538 aa12.81□□□□□ -0.36
SMG6-202ENST00000354901 PRG4Q92954 1404 aaPredicted RBP12.8□□□□□ -0.36
SMG6-202ENST00000354901 ERICH6BQ5W0A0 696 aa12.8□□□□□ -0.36
SMG6-202ENST00000354901 TROQ12816 1431 aaPredicted RBP12.8□□□□□ -0.36
SMG6-202ENST00000354901 ITSN2Q9NZM3 1697 aa12.79□□□□□ -0.36
SMG6-202ENST00000354901 DENND4BO75064 1496 aaPredicted RBP12.79□□□□□ -0.36
SMG6-202ENST00000354901 SENP3-EIF4A1A0A087X0R7 540 aa12.79□□□□□ -0.36
SMG6-202ENST00000354901 NBPF8Q3BBV2 869 aa12.79□□□□□ -0.36
SMG6-202ENST00000354901 NPM2Q86SE8 214 aaKnown RBP12.78□□□□□ -0.36
SMG6-202ENST00000354901 KDM5BQ9UGL1 1544 aa12.78□□□□□ -0.36
SMG6-202ENST00000354901 PLB1Q6P1J6 1458 aa12.78□□□□□ -0.36
SMG6-202ENST00000354901 AKNAQ7Z591 1439 aa12.77□□□□□ -0.36
SMG6-202ENST00000354901 PLEKHG5O94827 1062 aa12.77□□□□□ -0.37
SMG6-202ENST00000354901 CFDP1Q9UEE9 299 aaPredicted RBP12.76□□□□□ -0.37
SMG6-202ENST00000354901 LAS1LQ9Y4W2 734 aaKnown RBP12.76□□□□□ -0.37
SMG6-202ENST00000354901 PTPRGP23470 1445 aa12.76□□□□□ -0.37
SMG6-202ENST00000354901 MRS2Q9HD23 443 aa12.76□□□□□ -0.37
SMG6-202ENST00000354901 PKNOX2Q96KN3 472 aa12.74□□□□□ -0.37
SMG6-202ENST00000354901 DAPK1P53355 1430 aa12.73□□□□□ -0.37
SMG6-202ENST00000354901 KIF14Q15058 1648 aa12.73□□□□□ -0.37
SMG6-202ENST00000354901 ABCC5O15440 1437 aa12.72□□□□□ -0.37
SMG6-202ENST00000354901 GCC2Q8IWJ2 1684 aa12.72□□□□□ -0.37
SMG6-202ENST00000354901 ZBTB47Q9UFB7 747 aaPredicted RBP12.72□□□□□ -0.37
SMG6-202ENST00000354901 ATP10BO94823 1461 aa12.72□□□□□ -0.37
SMG6-202ENST00000354901 ANP32AP39687 249 aaKnown RBP12.72□□□□□ -0.37
SMG6-202ENST00000354901 PRKRIP1Q9H875 184 aaPredicted RBP12.71□□□□□ -0.37
SMG6-202ENST00000354901 UHRF1BP1LA0JNW5 1464 aa12.71□□□□□ -0.37
SMG6-202ENST00000354901 CCDC7Q96M83 1385 aa12.71□□□□□ -0.38
SMG6-202ENST00000354901 ANKRD30BQ9BXX2 1392 aa12.71□□□□□ -0.38
SMG6-202ENST00000354901 ABCC2Q92887 1545 aa12.71□□□□□ -0.38
SMG6-202ENST00000354901 DNMT1P26358 1616 aaKnown RBP12.7□□□□□ -0.38
SMG6-202ENST00000354901 CNTLNQ9NXG0 1405 aa12.69□□□□□ -0.38
SMG6-202ENST00000354901 KIF7Q2M1P5 1343 aa12.69□□□□□ -0.38
SMG6-202ENST00000354901 PKD2Q13563 968 aa12.69□□□□□ -0.38
SMG6-202ENST00000354901 BRPF3Q9ULD4 1205 aa12.69□□□□□ -0.38
SMG6-202ENST00000354901 ROCK1Q13464 1354 aa12.69□□□□□ -0.38
SMG6-202ENST00000354901 PLEKHD1A6NEE1 506 aa12.68□□□□□ -0.38
SMG6-202ENST00000354901 PODXL2Q9NZ53 605 aa12.68□□□□□ -0.38
SMG6-202ENST00000354901 KDM2AQ9Y2K7 1162 aa12.68□□□□□ -0.38
SMG6-202ENST00000354901 NEFMP07197 916 aa12.67□□□□□ -0.38
SMG6-202ENST00000354901 ABCC10Q5T3U5 1492 aa12.67□□□□□ -0.38
SMG6-202ENST00000354901 GPATCH8Q9UKJ3 1502 aaKnown RBP12.67□□□□□ -0.38
SMG6-202ENST00000354901 RPRD2Q5VT52 1461 aaKnown RBP12.65□□□□□ -0.38
SMG6-202ENST00000354901 ADGBQ8N7X0 1667 aa12.65□□□□□ -0.38
SMG6-202ENST00000354901 CDC42BPAQ5VT25 1732 aa12.65□□□□□ -0.38
SMG6-202ENST00000354901 NCOA1Q15788 1441 aa12.65□□□□□ -0.39
SMG6-202ENST00000354901 CROCC2H7BZ55 1655 aa12.64□□□□□ -0.39
SMG6-202ENST00000354901 PPP4R2Q9NY27 417 aa12.64□□□□□ -0.39
SMG6-202ENST00000354901 CAMSAP2Q08AD1 1489 aa12.64□□□□□ -0.39
SMG6-202ENST00000354901 ERCC6L2Q5T890 1561 aa12.62□□□□□ -0.39
SMG6-202ENST00000354901 TEX14Q8IWB6 1497 aa12.62□□□□□ -0.39
SMG6-202ENST00000354901 SHANK2Q9UPX8 1470 aa12.62□□□□□ -0.39
SMG6-202ENST00000354901 PREX2Q70Z35 1606 aa12.61□□□□□ -0.39
SMG6-202ENST00000354901 ADGRL2O95490 1459 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms