RNA–Protein interactions for RNA: ENST00000354547.7

COL13A1-201, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 3,027 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-201ENST00000354547 IFT140Q96RY7 1462 aa27.24■■□□□ 1.95
COL13A1-201ENST00000354547 C11orf95C9JLR9 678 aaPredicted RBP27.24■■□□□ 1.95
COL13A1-201ENST00000354547 DISP1Q96F81 1524 aa27.23■■□□□ 1.95
COL13A1-201ENST00000354547 CNGB1Q14028 1251 aaPredicted RBP27.23■■□□□ 1.95
COL13A1-201ENST00000354547 KIAA0586Q9BVV6 1533 aa27.22■■□□□ 1.95
COL13A1-201ENST00000354547 NUP153P49790 1475 aaKnown RBP27.22■■□□□ 1.95
COL13A1-201ENST00000354547 NBPF8Q3BBV2 869 aa27.22■■□□□ 1.95
COL13A1-201ENST00000354547 ABCC5O15440 1437 aa27.21■■□□□ 1.95
COL13A1-201ENST00000354547 CFDP1Q9UEE9 299 aaPredicted RBP27.21■■□□□ 1.95
COL13A1-201ENST00000354547 AKNAQ7Z591 1439 aa27.2■■□□□ 1.94
COL13A1-201ENST00000354547 PRG4Q92954 1404 aaPredicted RBP27.2■■□□□ 1.94
COL13A1-201ENST00000354547 IRX6P78412 446 aaPredicted RBP27.19■■□□□ 1.94
COL13A1-201ENST00000354547 CCDC184Q52MB2 194 aa27.18■■□□□ 1.94
COL13A1-201ENST00000354547 KIAA0556O60303 1618 aa27.18■■□□□ 1.94
COL13A1-201ENST00000354547 ZNF326Q5BKZ1 582 aaKnown RBP27.18■■□□□ 1.94
COL13A1-201ENST00000354547 GRIN2AQ12879 1464 aa27.16■■□□□ 1.94
COL13A1-201ENST00000354547 ANKRD30BQ9BXX2 1392 aa27.14■■□□□ 1.94
COL13A1-201ENST00000354547 POLR3GLQ9BT43 218 aa27.14■■□□□ 1.94
COL13A1-201ENST00000354547 ERCC6Q03468 1493 aa27.12■■□□□ 1.93
COL13A1-201ENST00000354547 FAM9BQ8IZU0 186 aa27.12■■□□□ 1.93
COL13A1-201ENST00000354547 PLB1Q6P1J6 1458 aa27.12■■□□□ 1.93
COL13A1-201ENST00000354547 RAPGEF6Q8TEU7 1601 aa27.1■■□□□ 1.93
COL13A1-201ENST00000354547 ROCK1Q13464 1354 aa27.1■■□□□ 1.93
COL13A1-201ENST00000354547 EIF4G3O43432 1585 aaKnown RBP27.08■■□□□ 1.93
COL13A1-201ENST00000354547 CCDC7Q96M83 1385 aa27.06■■□□□ 1.92
COL13A1-201ENST00000354547 DNMT1P26358 1616 aaKnown RBP27.06■■□□□ 1.92
COL13A1-201ENST00000354547 MYT1Q01538 1121 aa27.06■■□□□ 1.92
COL13A1-201ENST00000354547 RPRD2Q5VT52 1461 aaKnown RBP27.05■■□□□ 1.92
COL13A1-201ENST00000354547 JPH4Q96JJ6 628 aa27.05■■□□□ 1.92
COL13A1-201ENST00000354547 CNTLNQ9NXG0 1405 aa27.05■■□□□ 1.92
COL13A1-201ENST00000354547 MRS2Q9HD23 443 aa27.04■■□□□ 1.92
COL13A1-201ENST00000354547 TROQ12816 1431 aaPredicted RBP27.03■■□□□ 1.92
COL13A1-201ENST00000354547 PRKRIP1Q9H875 184 aaPredicted RBP27.03■■□□□ 1.92
COL13A1-201ENST00000354547 PKD2Q13563 968 aa27.01■■□□□ 1.91
COL13A1-201ENST00000354547 CAMSAP2Q08AD1 1489 aa27.01■■□□□ 1.91
COL13A1-201ENST00000354547 KIF7Q2M1P5 1343 aa27■■□□□ 1.91
COL13A1-201ENST00000354547 NCOA1Q15788 1441 aa26.99■■□□□ 1.91
COL13A1-201ENST00000354547 TEX14Q8IWB6 1497 aa26.98■■□□□ 1.91
COL13A1-201ENST00000354547 GPATCH8Q9UKJ3 1502 aaKnown RBP26.97■■□□□ 1.91
COL13A1-201ENST00000354547 PLEKHD1A6NEE1 506 aa26.96■■□□□ 1.91
COL13A1-201ENST00000354547 KIF14Q15058 1648 aa26.96■■□□□ 1.91
COL13A1-201ENST00000354547 CEP170Q5SW79 1584 aa26.96■■□□□ 1.91
COL13A1-201ENST00000354547 PZPP20742 1482 aa26.94■■□□□ 1.9
COL13A1-201ENST00000354547 SENP3-EIF4A1A0A087X0R7 540 aa26.93■■□□□ 1.9
COL13A1-201ENST00000354547 CARMIL2Q6F5E8 1435 aa26.92■■□□□ 1.9
COL13A1-201ENST00000354547 SYNJ2O15056 1496 aa26.91■■□□□ 1.9
COL13A1-201ENST00000354547 RBM19Q9Y4C8 960 aaKnown RBP26.9■■□□□ 1.9
COL13A1-201ENST00000354547 MAGI1Q96QZ7 1491 aaPredicted RBP26.9■■□□□ 1.9
COL13A1-201ENST00000354547 KDM2AQ9Y2K7 1162 aa26.89■■□□□ 1.9
COL13A1-201ENST00000354547 ANKRD30AQ9BXX3 1397 aa26.89■■□□□ 1.89
COL13A1-201ENST00000354547 HNRNPMP52272 730 aaKnown RBP eCLIP26.87■■□□□ 1.89
COL13A1-201ENST00000354547 NUP155O75694 1391 aa26.86■■□□□ 1.89
COL13A1-201ENST00000354547 SPATA31E1Q6ZUB1 1445 aa26.85■■□□□ 1.89
COL13A1-201ENST00000354547 ANKRD50Q9ULJ7 1429 aa26.85■■□□□ 1.89
COL13A1-201ENST00000354547 KIAA1107Q9UPP5 1409 aa26.84■■□□□ 1.89
COL13A1-201ENST00000354547 TSPY4P0CV99 314 aa26.84■■□□□ 1.89
COL13A1-201ENST00000354547 TSPY10P0CW01 314 aa26.84■■□□□ 1.89
COL13A1-201ENST00000354547 USP47Q96K76 1375 aa26.82■■□□□ 1.88
COL13A1-201ENST00000354547 ITSN2Q9NZM3 1697 aa26.8■■□□□ 1.88
COL13A1-201ENST00000354547 ATP10BO94823 1461 aa26.76■■□□□ 1.87
COL13A1-201ENST00000354547 CARD11Q9BXL7 1154 aa26.76■■□□□ 1.87
COL13A1-201ENST00000354547 NUP160Q12769 1436 aa26.75■■□□□ 1.87
COL13A1-201ENST00000354547 C9orf84Q5VXU9 1444 aa26.75■■□□□ 1.87
COL13A1-201ENST00000354547 ANP32EQ9BTT0 268 aa26.74■■□□□ 1.87
COL13A1-201ENST00000354547 ADGBQ8N7X0 1667 aa26.74■■□□□ 1.87
COL13A1-201ENST00000354547 DCAF11Q8TEB1 546 aa26.74■■□□□ 1.87
COL13A1-201ENST00000354547 ADGRL2O95490 1459 aa26.72■■□□□ 1.87
COL13A1-201ENST00000354547 ZBED9Q6R2W3 1325 aa26.71■■□□□ 1.87
COL13A1-201ENST00000354547 B4GALNT3Q6L9W6 998 aa26.69■■□□□ 1.86
COL13A1-201ENST00000354547 KIF15Q9NS87 1388 aa26.68■■□□□ 1.86
COL13A1-201ENST00000354547 ADCY10Q96PN6 1610 aa26.68■■□□□ 1.86
COL13A1-201ENST00000354547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.68■■□□□ 1.86
COL13A1-201ENST00000354547 ST20-MTHFSA0A0A6YYL1 179 aa26.67■■□□□ 1.86
COL13A1-201ENST00000354547 MBD5Q9P267 1494 aa26.67■■□□□ 1.86
COL13A1-201ENST00000354547 RGL3Q3MIN7 710 aa26.66■■□□□ 1.86
COL13A1-201ENST00000354547 CROCC2H7BZ55 1655 aa26.66■■□□□ 1.86
COL13A1-201ENST00000354547 CDC42BPAQ5VT25 1732 aa26.66■■□□□ 1.86
COL13A1-201ENST00000354547 DHX29Q7Z478 1369 aaKnown RBP26.66■■□□□ 1.86
COL13A1-201ENST00000354547 BCORL1Q5H9F3 1711 aa26.66■■□□□ 1.86
COL13A1-201ENST00000354547 ABCC10Q5T3U5 1492 aa26.65■■□□□ 1.86
COL13A1-201ENST00000354547 PTPRGP23470 1445 aa26.65■■□□□ 1.86
COL13A1-201ENST00000354547 PPP4R2Q9NY27 417 aa26.65■■□□□ 1.86
COL13A1-201ENST00000354547 ABCA8O94911 1581 aa26.63■■□□□ 1.85
COL13A1-201ENST00000354547 TMC1Q8TDI8 760 aa26.61■■□□□ 1.85
COL13A1-201ENST00000354547 POLR1AO95602 1720 aaPredicted RBP26.56■■□□□ 1.84
COL13A1-201ENST00000354547 KDM5CP41229 1560 aa26.55■■□□□ 1.84
COL13A1-201ENST00000354547 ROCK2O75116 1388 aaKnown RBP26.53■■□□□ 1.84
COL13A1-201ENST00000354547 SHANK2Q9UPX8 1470 aa26.52■■□□□ 1.84
COL13A1-201ENST00000354547 SALL2Q9Y467 1007 aaPredicted RBP26.52■■□□□ 1.84
COL13A1-201ENST00000354547 RALGAPBQ86X10 1494 aa26.51■■□□□ 1.83
COL13A1-201ENST00000354547 ERICH6BQ5W0A0 696 aa26.5■■□□□ 1.83
COL13A1-201ENST00000354547 MSH5O43196 834 aa26.49■■□□□ 1.83
COL13A1-201ENST00000354547 UHRF1BP1Q6BDS2 1440 aa26.49■■□□□ 1.83
COL13A1-201ENST00000354547 NBPF1Q3BBV0 1214 aa26.49■■□□□ 1.83
COL13A1-201ENST00000354547 PNISRQ8TF01 805 aaKnown RBP26.49■■□□□ 1.83
COL13A1-201ENST00000354547 ARID4BQ4LE39 1312 aaPredicted RBP26.47■■□□□ 1.83
COL13A1-201ENST00000354547 CCDC141Q6ZP82 1450 aa26.46■■□□□ 1.83
COL13A1-201ENST00000354547 NUDCQ9Y266 331 aa26.46■■□□□ 1.83
COL13A1-201ENST00000354547 SAMD9LQ8IVG5 1584 aa26.44■■□□□ 1.82
COL13A1-201ENST00000354547 CCDC144AA2RUR9 1427 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms