RNA–Protein interactions for RNA: ENST00000353442.9

LMBR1-201, Transcript of limb development membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMBR1, Length 7,997 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-201ENST00000353442 ANP32EQ9BTT0 268 aa17.21■□□□□ 0.35
LMBR1-201ENST00000353442 GTF2E1P29083 439 aaPredicted RBP17.21■□□□□ 0.35
LMBR1-201ENST00000353442 RASSF8Q8NHQ8 419 aa17.21■□□□□ 0.34
LMBR1-201ENST00000353442 CHAF1AQ13111 956 aaPredicted RBP17.2■□□□□ 0.34
LMBR1-201ENST00000353442 CFDP1Q9UEE9 299 aaPredicted RBP17.2■□□□□ 0.34
LMBR1-201ENST00000353442 MEX3CQ5U5Q3 659 aaKnown RBP17.18■□□□□ 0.34
LMBR1-201ENST00000353442 TOMM22Q9NS69 142 aa17.18■□□□□ 0.34
LMBR1-201ENST00000353442 MARCH6O60337 910 aa17.17■□□□□ 0.34
LMBR1-201ENST00000353442 GGT6Q6P531 493 aa17.17■□□□□ 0.34
LMBR1-201ENST00000353442 MCCP23508 829 aa17.15■□□□□ 0.34
LMBR1-201ENST00000353442 HDGFP51858 240 aaKnown RBP17.15■□□□□ 0.34
LMBR1-201ENST00000353442 FBXW7Q969H0 707 aa17.14■□□□□ 0.33
LMBR1-201ENST00000353442 CWC22Q9HCG8 908 aaKnown RBP17.14■□□□□ 0.33
LMBR1-201ENST00000353442 NUTM2FA1L443 756 aa17.13■□□□□ 0.33
LMBR1-201ENST00000353442 L1TD1Q5T7N2 865 aaKnown RBP17.13■□□□□ 0.33
LMBR1-201ENST00000353442 LTV1Q96GA3 475 aaPredicted RBP17.13■□□□□ 0.33
LMBR1-201ENST00000353442 SUPT16HQ9Y5B9 1047 aaKnown RBP17.12■□□□□ 0.33
LMBR1-201ENST00000353442 SAMD1Q6SPF0 538 aaPredicted RBP17.12■□□□□ 0.33
LMBR1-201ENST00000353442 KIAA1211Q6ZU35 1233 aa17.12■□□□□ 0.33
LMBR1-201ENST00000353442 B4GALNT3Q6L9W6 998 aa17.1■□□□□ 0.33
LMBR1-201ENST00000353442 HSCBQ8IWL3 235 aa17.1■□□□□ 0.33
LMBR1-201ENST00000353442 ERCC6Q03468 1493 aa17.1■□□□□ 0.33
LMBR1-201ENST00000353442 MIER1Q8N108 512 aa17.1■□□□□ 0.33
LMBR1-201ENST00000353442 CEP89Q96ST8 783 aa17.09■□□□□ 0.33
LMBR1-201ENST00000353442 MORC1Q86VD1 984 aa17.09■□□□□ 0.33
LMBR1-201ENST00000353442 NUTM2DQ5VT03 806 aaPredicted RBP17.08■□□□□ 0.32
LMBR1-201ENST00000353442 CTDP1Q9Y5B0 961 aaPredicted RBP17.08■□□□□ 0.32
LMBR1-201ENST00000353442 SCRIBQ14160 1630 aa17.08■□□□□ 0.32
LMBR1-201ENST00000353442 NOL8Q76FK4 1167 aaKnown RBP17.07■□□□□ 0.32
LMBR1-201ENST00000353442 DCAF8L1A6NGE4 600 aa17.06■□□□□ 0.32
LMBR1-201ENST00000353442 CHMP4BQ9H444 224 aaKnown RBP17.06■□□□□ 0.32
LMBR1-201ENST00000353442 PES1O00541 588 aaKnown RBP17.05■□□□□ 0.32
LMBR1-201ENST00000353442 TCEAL9Q9UHQ7 104 aa17.05■□□□□ 0.32
LMBR1-201ENST00000353442 MSNP26038 577 aaKnown RBP17.03■□□□□ 0.32
LMBR1-201ENST00000353442 EVA1CP58658 441 aa17.03■□□□□ 0.32
LMBR1-201ENST00000353442 DCAF11Q8TEB1 546 aa17.03■□□□□ 0.32
LMBR1-201ENST00000353442 TRIM34Q9BYJ4 488 aa17.02■□□□□ 0.32
LMBR1-201ENST00000353442 TRIM6-TRIM34B2RNG4 842 aa17.01■□□□□ 0.31
LMBR1-201ENST00000353442 SLC4A10Q6U841 1118 aa17.01■□□□□ 0.31
LMBR1-201ENST00000353442 HDGFL2Q7Z4V5 671 aaPredicted RBP17■□□□□ 0.31
LMBR1-201ENST00000353442 PATL2C9JE40 543 aaKnown RBP17■□□□□ 0.31
LMBR1-201ENST00000353442 NGEFQ8N5V2 710 aa16.99■□□□□ 0.31
LMBR1-201ENST00000353442 MS4A1P11836 297 aa16.99■□□□□ 0.31
LMBR1-201ENST00000353442 SYTL4Q96C24 671 aaPredicted RBP16.99■□□□□ 0.31
LMBR1-201ENST00000353442 KANK1Q14678 1352 aa16.98■□□□□ 0.31
LMBR1-201ENST00000353442 PPP1R1BQ9UD71 204 aaPredicted RBP16.97■□□□□ 0.31
LMBR1-201ENST00000353442 ITPRIPQ8IWB1 547 aa16.96■□□□□ 0.31
LMBR1-201ENST00000353442 NGDNQ8NEJ9 315 aaKnown RBP16.96■□□□□ 0.31
LMBR1-201ENST00000353442 TMF1P82094 1093 aa16.96■□□□□ 0.3
LMBR1-201ENST00000353442 GZF1Q9H116 711 aaPredicted RBP16.96■□□□□ 0.3
LMBR1-201ENST00000353442 FOXD4L1Q9NU39 408 aa16.95■□□□□ 0.3
LMBR1-201ENST00000353442 FOXD4L5Q5VV16 416 aaPredicted RBP16.94■□□□□ 0.3
LMBR1-201ENST00000353442 FOXD4L4Q8WXT5 416 aaPredicted RBP16.94■□□□□ 0.3
LMBR1-201ENST00000353442 ZCCHC6Q5VYS8 1495 aaKnown RBP16.93■□□□□ 0.3
LMBR1-201ENST00000353442 TPM4P67936 248 aa16.92■□□□□ 0.3
LMBR1-201ENST00000353442 U2AF1L5P0DN76 240 aaPredicted RBP16.92■□□□□ 0.3
LMBR1-201ENST00000353442 U2AF1Q01081 240 aaKnown RBP eCLIP16.92■□□□□ 0.32e-6■■■■□ 21.7
LMBR1-201ENST00000353442 GPATCH3Q96I76 525 aa16.9■□□□□ 0.3
LMBR1-201ENST00000353442 STK31Q9BXU1 1019 aa16.9■□□□□ 0.3
LMBR1-201ENST00000353442 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
LMBR1-201ENST00000353442 AMPHP49418 695 aa16.9■□□□□ 0.3
LMBR1-201ENST00000353442 DHX16O60231 1041 aaKnown RBP16.89■□□□□ 0.29
LMBR1-201ENST00000353442 SIN3AQ96ST3 1273 aa16.89■□□□□ 0.29
LMBR1-201ENST00000353442 TPD52L1Q16890 204 aaPredicted RBP16.89■□□□□ 0.29
LMBR1-201ENST00000353442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.88■□□□□ 0.292e-6■■■□□ 17.4
LMBR1-201ENST00000353442 SPAG9O60271 1321 aaKnown RBP16.88■□□□□ 0.29
LMBR1-201ENST00000353442 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.88■□□□□ 0.292e-6■■■■■ 85.3
LMBR1-201ENST00000353442 EID1Q9Y6B2 187 aa16.87■□□□□ 0.29
LMBR1-201ENST00000353442 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.87■□□□□ 0.29
LMBR1-201ENST00000353442 GOLGA6L1Q8N7Z2 621 aa16.85■□□□□ 0.29
LMBR1-201ENST00000353442 NOL10Q9BSC4 688 aaKnown RBP16.85■□□□□ 0.29
LMBR1-201ENST00000353442 HTATSF1O43719 755 aaKnown RBP16.85■□□□□ 0.29
LMBR1-201ENST00000353442 EIF4G1Q04637 1599 aaKnown RBP16.84■□□□□ 0.29
LMBR1-201ENST00000353442 SF3A1Q15459 793 aaKnown RBP16.83■□□□□ 0.29
LMBR1-201ENST00000353442 TPM3P06753 285 aa16.82■□□□□ 0.28
LMBR1-201ENST00000353442 SLC4A3P48751 1232 aa16.82■□□□□ 0.28
LMBR1-201ENST00000353442 MFAP1P55081 439 aaKnown RBP16.82■□□□□ 0.28
LMBR1-201ENST00000353442 CCDC34Q96HJ3 373 aa16.82■□□□□ 0.28
LMBR1-201ENST00000353442 FOXD4L6Q3SYB3 417 aaPredicted RBP16.81■□□□□ 0.28
LMBR1-201ENST00000353442 FOXD4L3Q6VB84 417 aaPredicted RBP16.81■□□□□ 0.28
LMBR1-201ENST00000353442 TNNT3P45378 269 aaPredicted RBP16.81■□□□□ 0.28
LMBR1-201ENST00000353442 SLKQ9H2G2 1235 aaPredicted RBP16.81■□□□□ 0.28
LMBR1-201ENST00000353442 NOP58Q9Y2X3 529 aaKnown RBP16.81■□□□□ 0.28
LMBR1-201ENST00000353442 IPO8O15397 1037 aaKnown RBP16.8■□□□□ 0.28
LMBR1-201ENST00000353442 AKAP17AQ02040 695 aaKnown RBP16.8■□□□□ 0.28
LMBR1-201ENST00000353442 CCAR2Q8N163 923 aaKnown RBP16.8■□□□□ 0.28
LMBR1-201ENST00000353442 VPS37DQ86XT2 251 aa16.8■□□□□ 0.28
LMBR1-201ENST00000353442 PCMTD1Q96MG8 357 aaPredicted RBP16.8■□□□□ 0.28
LMBR1-201ENST00000353442 PAF1Q8N7H5 531 aa16.8■□□□□ 0.28
LMBR1-201ENST00000353442 MTMR7Q9Y216 660 aa16.79■□□□□ 0.28
LMBR1-201ENST00000353442 CCDC43Q96MW1 224 aaKnown RBP16.78■□□□□ 0.28
LMBR1-201ENST00000353442 FOXD1Q16676 465 aa16.78■□□□□ 0.28
LMBR1-201ENST00000353442 AMOTL1Q8IY63 956 aa16.78■□□□□ 0.28
LMBR1-201ENST00000353442 FYB1O15117 783 aa16.78■□□□□ 0.28
LMBR1-201ENST00000353442 CLIP1P30622 1438 aa16.77■□□□□ 0.28
LMBR1-201ENST00000353442 VSIG10Q8N0Z9 540 aa16.77■□□□□ 0.28
LMBR1-201ENST00000353442 CCDC146Q8IYE0 955 aa16.77■□□□□ 0.27
LMBR1-201ENST00000353442 NECTIN2Q92692 538 aa16.76■□□□□ 0.27
LMBR1-201ENST00000353442 CCNB3Q8WWL7 1395 aa16.76■□□□□ 0.27
LMBR1-201ENST00000353442 CLUAP1Q96AJ1 413 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms