RNA–Protein interactions for RNA: ENST00000351948.8

SMC6-201, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,173 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-201ENST00000351948 LAS1LQ9Y4W2 734 aaKnown RBP18.18■□□□□ 0.5
SMC6-201ENST00000351948 U2SURPO15042 1029 aaKnown RBP18.18■□□□□ 0.5
SMC6-201ENST00000351948 MYT1Q01538 1121 aa18.17■□□□□ 0.5
SMC6-201ENST00000351948 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.17■□□□□ 0.5
SMC6-201ENST00000351948 HDGFP51858 240 aaKnown RBP18.13■□□□□ 0.49
SMC6-201ENST00000351948 ROCK2O75116 1388 aaKnown RBP18.13■□□□□ 0.49
SMC6-201ENST00000351948 FAM69CQ0P6D2 419 aa18.12■□□□□ 0.49
SMC6-201ENST00000351948 ARXQ96QS3 562 aa18.12■□□□□ 0.49
SMC6-201ENST00000351948 GRIN2BQ13224 1484 aa18.12■□□□□ 0.49
SMC6-201ENST00000351948 TOPBP1Q92547 1522 aa18.11■□□□□ 0.49
SMC6-201ENST00000351948 TIMELESSQ9UNS1 1208 aa18.11■□□□□ 0.49
SMC6-201ENST00000351948 ANP32AP39687 249 aaKnown RBP18.11■□□□□ 0.49
SMC6-201ENST00000351948 RSPH4AQ5TD94 716 aa18.11■□□□□ 0.49
SMC6-201ENST00000351948 MRC2Q9UBG0 1479 aa18.11■□□□□ 0.49
SMC6-201ENST00000351948 POLA1P09884 1462 aaPredicted RBP18.1■□□□□ 0.49
SMC6-201ENST00000351948 CUX1P39880 1505 aa18.1■□□□□ 0.49
SMC6-201ENST00000351948 NUTM2FA1L443 756 aa18.1■□□□□ 0.49
SMC6-201ENST00000351948 HMGXB3Q12766 1538 aa18.1■□□□□ 0.49
SMC6-201ENST00000351948 SUPT16HQ9Y5B9 1047 aaKnown RBP18.1■□□□□ 0.49
SMC6-201ENST00000351948 MAPK8IP3Q9UPT6 1336 aa18.09■□□□□ 0.49
SMC6-201ENST00000351948 NUDCQ9Y266 331 aa18.06■□□□□ 0.48
SMC6-201ENST00000351948 MORC1Q86VD1 984 aa18.06■□□□□ 0.48
SMC6-201ENST00000351948 KIF21BO75037 1637 aa18.05■□□□□ 0.48
SMC6-201ENST00000351948 PAK3O75914 559 aaPredicted RBP18.05■□□□□ 0.48
SMC6-201ENST00000351948 PHLDB1Q86UU1 1377 aa18.04■□□□□ 0.48
SMC6-201ENST00000351948 PRDM2Q13029 1718 aa18.04■□□□□ 0.48
SMC6-201ENST00000351948 TRAK1Q9UPV9 953 aa18.03■□□□□ 0.48
SMC6-201ENST00000351948 PRG4Q92954 1404 aaPredicted RBP18.03■□□□□ 0.48
SMC6-201ENST00000351948 ARAP1Q96P48 1450 aa18.02■□□□□ 0.48
SMC6-201ENST00000351948 AFAP1Q8N556 730 aa18.01■□□□□ 0.47
SMC6-201ENST00000351948 FRAT1Q92837 279 aaPredicted RBP18.01■□□□□ 0.47
SMC6-201ENST00000351948 DHX57Q6P158 1386 aaKnown RBP18.01■□□□□ 0.47
SMC6-201ENST00000351948 HSP90AA1P07900 732 aaKnown RBP18■□□□□ 0.47
SMC6-201ENST00000351948 SNAPC4Q5SXM2 1469 aa17.99■□□□□ 0.47
SMC6-201ENST00000351948 IFT140Q96RY7 1462 aa17.98■□□□□ 0.47
SMC6-201ENST00000351948 UPF2Q9HAU5 1272 aaKnown RBP17.98■□□□□ 0.47
SMC6-201ENST00000351948 MYH16Q9H6N6 1097 aa17.97■□□□□ 0.47
SMC6-201ENST00000351948 TOP2BQ02880 1626 aa17.96■□□□□ 0.47
SMC6-201ENST00000351948 FGD6Q6ZV73 1430 aa17.96■□□□□ 0.46
SMC6-201ENST00000351948 ST20-MTHFSA0A0A6YYL1 179 aa17.95■□□□□ 0.46
SMC6-201ENST00000351948 EID1Q9Y6B2 187 aa17.95■□□□□ 0.46
SMC6-201ENST00000351948 CCDC144AA2RUR9 1427 aa17.95■□□□□ 0.46
SMC6-201ENST00000351948 HDGFL2Q7Z4V5 671 aaPredicted RBP17.95■□□□□ 0.46
SMC6-201ENST00000351948 FTSJ3Q8IY81 847 aaKnown RBP17.94■□□□□ 0.46
SMC6-201ENST00000351948 MYOM3Q5VTT5 1437 aa17.93■□□□□ 0.46
SMC6-201ENST00000351948 LRRC9Q6ZRR7 1453 aa17.93■□□□□ 0.46
SMC6-201ENST00000351948 PRXQ9BXM0 1461 aa17.91■□□□□ 0.46
SMC6-201ENST00000351948 KIF15Q9NS87 1388 aa17.91■□□□□ 0.46
SMC6-201ENST00000351948 CASKIN1Q8WXD9 1431 aa17.9■□□□□ 0.46
SMC6-201ENST00000351948 NCOA2Q15596 1464 aa17.9■□□□□ 0.46
SMC6-201ENST00000351948 KTN1Q86UP2 1357 aaKnown RBP17.9■□□□□ 0.46
SMC6-201ENST00000351948 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.9■□□□□ 0.46
SMC6-201ENST00000351948 U2AF1L5P0DN76 240 aaPredicted RBP17.89■□□□□ 0.46
SMC6-201ENST00000351948 U2AF1Q01081 240 aaKnown RBP eCLIP17.89■□□□□ 0.46
SMC6-201ENST00000351948 DNMBPQ6XZF7 1577 aa17.88■□□□□ 0.45
SMC6-201ENST00000351948 NGDNQ8NEJ9 315 aaKnown RBP17.86■□□□□ 0.45
SMC6-201ENST00000351948 ERICH3Q5RHP9 1530 aa17.86■□□□□ 0.45
SMC6-201ENST00000351948 MINK1Q8N4C8 1332 aaPredicted RBP17.84■□□□□ 0.45
SMC6-201ENST00000351948 SYNJ2O15056 1496 aa17.83■□□□□ 0.44
SMC6-201ENST00000351948 UNC13AQ9UPW8 1703 aa17.83■□□□□ 0.44
SMC6-201ENST00000351948 CSB-PGBD3P0DP91 1061 aa17.83■□□□□ 0.44
SMC6-201ENST00000351948 EIF3AQ14152 1382 aaKnown RBP17.82■□□□□ 0.44
SMC6-201ENST00000351948 RGS3P49796 1198 aa17.82■□□□□ 0.44
SMC6-201ENST00000351948 ARHGAP5Q13017 1502 aa17.81■□□□□ 0.44
SMC6-201ENST00000351948 B4GALNT3Q6L9W6 998 aa17.81■□□□□ 0.44
SMC6-201ENST00000351948 CCDC146Q8IYE0 955 aa17.81■□□□□ 0.44
SMC6-201ENST00000351948 LTV1Q96GA3 475 aaPredicted RBP17.81■□□□□ 0.44
SMC6-201ENST00000351948 VGFO15240 615 aaPredicted RBP17.81■□□□□ 0.44
SMC6-201ENST00000351948 RAPGEF3O95398 923 aa17.81■□□□□ 0.44
SMC6-201ENST00000351948 ANKRD50Q9ULJ7 1429 aa17.8■□□□□ 0.44
SMC6-201ENST00000351948 CCER2I3L3R5 266 aa17.8■□□□□ 0.44
SMC6-201ENST00000351948 PANK3Q9H999 370 aa17.8■□□□□ 0.44
SMC6-201ENST00000351948 TERF2IPQ9NYB0 399 aa17.8■□□□□ 0.44
SMC6-201ENST00000351948 LAMC3Q9Y6N6 1575 aa17.78■□□□□ 0.44
SMC6-201ENST00000351948 FYCO1Q9BQS8 1478 aa17.77■□□□□ 0.44
SMC6-201ENST00000351948 ZNF608Q9ULD9 1512 aaPredicted RBP17.77■□□□□ 0.43
SMC6-201ENST00000351948 RTF1Q92541 710 aaKnown RBP17.77■□□□□ 0.43
SMC6-201ENST00000351948 PNNQ9H307 717 aaKnown RBP17.77■□□□□ 0.43
SMC6-201ENST00000351948 ABCA10Q8WWZ4 1543 aa17.76■□□□□ 0.43
SMC6-201ENST00000351948 URB2Q14146 1524 aaKnown RBP17.76■□□□□ 0.43
SMC6-201ENST00000351948 RALBP1Q15311 655 aa17.75■□□□□ 0.43
SMC6-201ENST00000351948 NBR1Q14596 966 aa17.75■□□□□ 0.43
SMC6-201ENST00000351948 TMEM132EQ6IEE7 984 aa17.75■□□□□ 0.43
SMC6-201ENST00000351948 USP47Q96K76 1375 aa17.75■□□□□ 0.43
SMC6-201ENST00000351948 NPHP1O15259 732 aa17.75■□□□□ 0.43
SMC6-201ENST00000351948 CDK13Q14004 1512 aaKnown RBP17.73■□□□□ 0.43
SMC6-201ENST00000351948 ZNF330Q9Y3S2 320 aaPredicted RBP17.73■□□□□ 0.43
SMC6-201ENST00000351948 SCAPERQ9BY12 1400 aa17.73■□□□□ 0.43
SMC6-201ENST00000351948 CCDC9Q9Y3X0 531 aaKnown RBP17.71■□□□□ 0.43
SMC6-201ENST00000351948 RRP7AQ9Y3A4 280 aaKnown RBP17.71■□□□□ 0.43
SMC6-201ENST00000351948 AMPHP49418 695 aa17.7■□□□□ 0.42
SMC6-201ENST00000351948 KIAA0586Q9BVV6 1533 aa17.69■□□□□ 0.42
SMC6-201ENST00000351948 NLRP13Q86W25 1043 aa17.68■□□□□ 0.42
SMC6-201ENST00000351948 TROQ12816 1431 aaPredicted RBP17.68■□□□□ 0.42
SMC6-201ENST00000351948 UACAQ9BZF9 1416 aa17.68■□□□□ 0.42
SMC6-201ENST00000351948 OS9Q13438 667 aaPredicted RBP17.68■□□□□ 0.42
SMC6-201ENST00000351948 PPP4R2Q9NY27 417 aa17.68■□□□□ 0.42
SMC6-201ENST00000351948 PLB1Q6P1J6 1458 aa17.67■□□□□ 0.42
SMC6-201ENST00000351948 EFCAB5A4FU69 1503 aa17.67■□□□□ 0.42
SMC6-201ENST00000351948 APBB1O00213 710 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms