RNA–Protein interactions for RNA: ENST00000351677.6

PTPN11-201, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN11, Length 6,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-201ENST00000351677 SOX12O15370 315 aa20.62■□□□□ 0.89
PTPN11-201ENST00000351677 MS4A1P11836 297 aa20.61■□□□□ 0.89
PTPN11-201ENST00000351677 RTN4Q9NQC3 1192 aaKnown RBP20.6■□□□□ 0.89
PTPN11-201ENST00000351677 STK26Q9P289 416 aa20.6■□□□□ 0.89
PTPN11-201ENST00000351677 CARMIL2Q6F5E8 1435 aa20.6■□□□□ 0.89
PTPN11-201ENST00000351677 RUSC2Q8N2Y8 1516 aa20.6■□□□□ 0.89
PTPN11-201ENST00000351677 L3MBTL2Q969R5 705 aa20.59■□□□□ 0.89
PTPN11-201ENST00000351677 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
PTPN11-201ENST00000351677 PNNQ9H307 717 aaKnown RBP20.59■□□□□ 0.89
PTPN11-201ENST00000351677 HSP90AB1P08238 724 aaKnown RBP20.58■□□□□ 0.89
PTPN11-201ENST00000351677 PTMAP06454 111 aaKnown RBP20.57■□□□□ 0.88
PTPN11-201ENST00000351677 CHMP4BQ9H444 224 aaKnown RBP20.56■□□□□ 0.88
PTPN11-201ENST00000351677 ANKRD30AQ9BXX3 1397 aa20.56■□□□□ 0.88
PTPN11-201ENST00000351677 RCAN3Q9UKA8 241 aa20.55■□□□□ 0.88
PTPN11-201ENST00000351677 HNRNPMP52272 730 aaKnown RBP eCLIP20.54■□□□□ 0.88
PTPN11-201ENST00000351677 OS9Q13438 667 aaPredicted RBP20.54■□□□□ 0.88
PTPN11-201ENST00000351677 RALBP1Q15311 655 aa20.52■□□□□ 0.88
PTPN11-201ENST00000351677 SPRYD3Q8NCJ5 442 aa20.52■□□□□ 0.88
PTPN11-201ENST00000351677 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
PTPN11-201ENST00000351677 DHX57Q6P158 1386 aaKnown RBP20.49■□□□□ 0.87
PTPN11-201ENST00000351677 TAOK2Q9UL54 1235 aa20.49■□□□□ 0.87
PTPN11-201ENST00000351677 ZRSR1Q15695 479 aaKnown RBP20.48■□□□□ 0.87
PTPN11-201ENST00000351677 EFCAB2Q5VUJ9 269 aa20.48■□□□□ 0.87
PTPN11-201ENST00000351677 U2AF1L5P0DN76 240 aaPredicted RBP20.47■□□□□ 0.87
PTPN11-201ENST00000351677 U2AF1Q01081 240 aaKnown RBP eCLIP20.47■□□□□ 0.87
PTPN11-201ENST00000351677 HSCBQ8IWL3 235 aa20.47■□□□□ 0.87
PTPN11-201ENST00000351677 ERICH6BQ5W0A0 696 aa20.47■□□□□ 0.87
PTPN11-201ENST00000351677 DNTTIP2Q5QJE6 756 aaKnown RBP20.46■□□□□ 0.87
PTPN11-201ENST00000351677 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
PTPN11-201ENST00000351677 PLCB2Q00722 1185 aa20.45■□□□□ 0.86
PTPN11-201ENST00000351677 SMARCA4P51532 1647 aa20.45■□□□□ 0.86
PTPN11-201ENST00000351677 HDGFL2Q7Z4V5 671 aaPredicted RBP20.44■□□□□ 0.86
PTPN11-201ENST00000351677 TSHZ2Q9NRE2 1034 aa20.44■□□□□ 0.86
PTPN11-201ENST00000351677 KCNJ4P48050 445 aa20.44■□□□□ 0.86
PTPN11-201ENST00000351677 HDGFP51858 240 aaKnown RBP20.43■□□□□ 0.86
PTPN11-201ENST00000351677 DEKP35659 375 aaKnown RBP20.43■□□□□ 0.86
PTPN11-201ENST00000351677 KIF3BO15066 747 aa20.43■□□□□ 0.86
PTPN11-201ENST00000351677 APBB1O00213 710 aa20.43■□□□□ 0.86
PTPN11-201ENST00000351677 NAP1L5Q96NT1 182 aaPredicted RBP20.41■□□□□ 0.86
PTPN11-201ENST00000351677 CCDC18Q5T9S5 1454 aa20.4■□□□□ 0.86
PTPN11-201ENST00000351677 FGD1P98174 961 aa20.4■□□□□ 0.86
PTPN11-201ENST00000351677 CCDC146Q8IYE0 955 aa20.4■□□□□ 0.86
PTPN11-201ENST00000351677 CDK11BP21127 795 aaKnown RBP20.4■□□□□ 0.86
PTPN11-201ENST00000351677 RTF1Q92541 710 aaKnown RBP20.39■□□□□ 0.85
PTPN11-201ENST00000351677 ITPRIPQ8IWB1 547 aa20.39■□□□□ 0.85
PTPN11-201ENST00000351677 NUTM2DQ5VT03 806 aaPredicted RBP20.38■□□□□ 0.85
PTPN11-201ENST00000351677 NAP1L2Q9ULW6 460 aaPredicted RBP20.38■□□□□ 0.85
PTPN11-201ENST00000351677 IPO8O15397 1037 aaKnown RBP20.37■□□□□ 0.85
PTPN11-201ENST00000351677 TCERG1O14776 1098 aaKnown RBP20.36■□□□□ 0.85
PTPN11-201ENST00000351677 NLRP13Q86W25 1043 aa20.35■□□□□ 0.85
PTPN11-201ENST00000351677 EIF3AQ14152 1382 aaKnown RBP20.35■□□□□ 0.85
PTPN11-201ENST00000351677 GOLGA2Q08379 1002 aa20.34■□□□□ 0.85
PTPN11-201ENST00000351677 ST20-MTHFSA0A0A6YYL1 179 aa20.34■□□□□ 0.85
PTPN11-201ENST00000351677 JPH4Q96JJ6 628 aa20.33■□□□□ 0.85
PTPN11-201ENST00000351677 TRHP20396 242 aaPredicted RBP20.33■□□□□ 0.85
PTPN11-201ENST00000351677 RWDD1Q9H446 243 aaPredicted RBP20.33■□□□□ 0.85
PTPN11-201ENST00000351677 SPAG9O60271 1321 aaKnown RBP20.32■□□□□ 0.84
PTPN11-201ENST00000351677 PAK3O75914 559 aaPredicted RBP20.31■□□□□ 0.84
PTPN11-201ENST00000351677 SLKQ9H2G2 1235 aaPredicted RBP20.31■□□□□ 0.84
PTPN11-201ENST00000351677 CLUAP1Q96AJ1 413 aa20.31■□□□□ 0.84
PTPN11-201ENST00000351677 MCCP23508 829 aa20.3■□□□□ 0.84
PTPN11-201ENST00000351677 SMC4Q9NTJ3 1288 aa20.29■□□□□ 0.84
PTPN11-201ENST00000351677 NPHP1O15259 732 aa20.28■□□□□ 0.84
PTPN11-201ENST00000351677 KIF15Q9NS87 1388 aa20.28■□□□□ 0.84
PTPN11-201ENST00000351677 RSPH4AQ5TD94 716 aa20.28■□□□□ 0.84
PTPN11-201ENST00000351677 FANCD2Q9BXW9 1451 aa20.27■□□□□ 0.84
PTPN11-201ENST00000351677 PANK3Q9H999 370 aa20.27■□□□□ 0.84
PTPN11-201ENST00000351677 CALD1Q05682 793 aaKnown RBP20.27■□□□□ 0.83
PTPN11-201ENST00000351677 TRAK1Q9UPV9 953 aa20.26■□□□□ 0.83
PTPN11-201ENST00000351677 GOLGA6L4A6NEF3 574 aa20.26■□□□□ 0.83
PTPN11-201ENST00000351677 MYBBP1AQ9BQG0 1328 aaKnown RBP20.25■□□□□ 0.83
PTPN11-201ENST00000351677 WASHC2CQ9Y4E1 1318 aa20.25■□□□□ 0.83
PTPN11-201ENST00000351677 L1TD1Q5T7N2 865 aaKnown RBP20.25■□□□□ 0.83
PTPN11-201ENST00000351677 PMFBP1Q8TBY8 1022 aa20.25■□□□□ 0.83
PTPN11-201ENST00000351677 PRKRIP1Q9H875 184 aaPredicted RBP20.25■□□□□ 0.83
PTPN11-201ENST00000351677 PDE3BQ13370 1112 aa20.24■□□□□ 0.83
PTPN11-201ENST00000351677 MFAP1P55081 439 aaKnown RBP20.24■□□□□ 0.83
PTPN11-201ENST00000351677 TULP1O00294 542 aaPredicted RBP20.24■□□□□ 0.83
PTPN11-201ENST00000351677 GZF1Q9H116 711 aaPredicted RBP20.24■□□□□ 0.83
PTPN11-201ENST00000351677 TERF2IPQ9NYB0 399 aa20.23■□□□□ 0.83
PTPN11-201ENST00000351677 CENPJQ9HC77 1338 aaPredicted RBP20.23■□□□□ 0.83
PTPN11-201ENST00000351677 CCDC144AA2RUR9 1427 aa20.23■□□□□ 0.83
PTPN11-201ENST00000351677 RRP7AQ9Y3A4 280 aaKnown RBP20.23■□□□□ 0.83
PTPN11-201ENST00000351677 IPO9Q96P70 1041 aaKnown RBP20.23■□□□□ 0.83
PTPN11-201ENST00000351677 CFAP44Q96MT7 982 aa20.21■□□□□ 0.83
PTPN11-201ENST00000351677 PLIN1O60240 522 aa20.2■□□□□ 0.82
PTPN11-201ENST00000351677 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.2■□□□□ 0.82
PTPN11-201ENST00000351677 USP47Q96K76 1375 aa20.19■□□□□ 0.82
PTPN11-201ENST00000351677 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
PTPN11-201ENST00000351677 KIAA1211Q6ZU35 1233 aa20.18■□□□□ 0.82
PTPN11-201ENST00000351677 IGF1RP08069 1367 aa20.17■□□□□ 0.82
PTPN11-201ENST00000351677 NUTM2FA1L443 756 aa20.16■□□□□ 0.82
PTPN11-201ENST00000351677 MSNP26038 577 aaKnown RBP20.16■□□□□ 0.82
PTPN11-201ENST00000351677 GBP4Q96PP9 640 aa20.16■□□□□ 0.82
PTPN11-201ENST00000351677 GOLGA6L6A8MZA4 724 aa20.15■□□□□ 0.82
PTPN11-201ENST00000351677 FGD5Q6ZNL6 1462 aa20.15■□□□□ 0.82
PTPN11-201ENST00000351677 STK31Q9BXU1 1019 aa20.15■□□□□ 0.82
PTPN11-201ENST00000351677 SLC4A10Q6U841 1118 aa20.14■□□□□ 0.81
PTPN11-201ENST00000351677 BCL2L13Q9BXK5 485 aa20.14■□□□□ 0.81
PTPN11-201ENST00000351677 EXOC6Q8TAG9 804 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms