RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 CFDP1Q9UEE9 299 aaPredicted RBP23.83■■□□□ 1.41
SEC13-201ENST00000337354 FANCAO15360 1455 aa23.82■■□□□ 1.4
SEC13-201ENST00000337354 SUPT6HQ7KZ85 1726 aaKnown RBP23.8■■□□□ 1.4
SEC13-201ENST00000337354 AKNAQ7Z591 1439 aa23.78■■□□□ 1.4
SEC13-201ENST00000337354 ARHGAP5Q13017 1502 aa23.77■■□□□ 1.4
SEC13-201ENST00000337354 PREX2Q70Z35 1606 aa23.76■■□□□ 1.39
SEC13-201ENST00000337354 ZNF777Q9ULD5 760 aaPredicted RBP23.75■■□□□ 1.39
SEC13-201ENST00000337354 FRMPD1Q5SYB0 1578 aa23.74■■□□□ 1.39
SEC13-201ENST00000337354 PPARGC1BQ86YN6 1023 aaKnown RBP23.73■■□□□ 1.39
SEC13-201ENST00000337354 CDC42BPAQ5VT25 1732 aa23.73■■□□□ 1.39
SEC13-201ENST00000337354 RICTORQ6R327 1708 aa23.73■■□□□ 1.39
SEC13-201ENST00000337354 CDC42BPBQ9Y5S2 1711 aa23.73■■□□□ 1.39
SEC13-201ENST00000337354 MYOM3Q5VTT5 1437 aa23.72■■□□□ 1.39
SEC13-201ENST00000337354 MIA2Q96PC5 1412 aa23.72■■□□□ 1.39
SEC13-201ENST00000337354 SCAPERQ9BY12 1400 aa23.7■■□□□ 1.38
SEC13-201ENST00000337354 ADGRL1O94910 1474 aa23.69■■□□□ 1.38
SEC13-201ENST00000337354 DENND4BO75064 1496 aaPredicted RBP23.69■■□□□ 1.38
SEC13-201ENST00000337354 KIAA1107Q9UPP5 1409 aa23.68■■□□□ 1.38
SEC13-201ENST00000337354 PLEKHH2Q8IVE3 1493 aa23.68■■□□□ 1.38
SEC13-201ENST00000337354 RSPH4AQ5TD94 716 aa23.66■■□□□ 1.38
SEC13-201ENST00000337354 RAPGEF3O95398 923 aa23.65■■□□□ 1.38
SEC13-201ENST00000337354 ZNF644Q9H582 1327 aaPredicted RBP23.65■■□□□ 1.38
SEC13-201ENST00000337354 ITSN2Q9NZM3 1697 aa23.65■■□□□ 1.38
SEC13-201ENST00000337354 HNRNPMP52272 730 aaKnown RBP eCLIP23.63■■□□□ 1.37
SEC13-201ENST00000337354 ARHGEF40Q8TER5 1519 aa23.61■■□□□ 1.37
SEC13-201ENST00000337354 FGD6Q6ZV73 1430 aa23.61■■□□□ 1.37
SEC13-201ENST00000337354 ZMYM4Q5VZL5 1548 aa23.61■■□□□ 1.37
SEC13-201ENST00000337354 AFAP1Q8N556 730 aa23.6■■□□□ 1.37
SEC13-201ENST00000337354 POGZQ7Z3K3 1410 aa23.6■■□□□ 1.37
SEC13-201ENST00000337354 ABCC1P33527 1531 aa23.58■■□□□ 1.37
SEC13-201ENST00000337354 SAMD9LQ8IVG5 1584 aa23.58■■□□□ 1.36
SEC13-201ENST00000337354 ZNF518AQ6AHZ1 1483 aa23.57■■□□□ 1.36
SEC13-201ENST00000337354 ARHGEF12Q9NZN5 1544 aa23.57■■□□□ 1.36
SEC13-201ENST00000337354 CAMSAP2Q08AD1 1489 aa23.57■■□□□ 1.36
SEC13-201ENST00000337354 ZFYVE16Q7Z3T8 1539 aa23.56■■□□□ 1.36
SEC13-201ENST00000337354 MBD5Q9P267 1494 aa23.56■■□□□ 1.36
SEC13-201ENST00000337354 TRAPPC8Q9Y2L5 1435 aa23.55■■□□□ 1.36
SEC13-201ENST00000337354 AEBP2Q6ZN18 517 aaPredicted RBP23.55■■□□□ 1.36
SEC13-201ENST00000337354 TCOF1Q13428 1488 aaKnown RBP23.53■■□□□ 1.36
SEC13-201ENST00000337354 TSPY4P0CV99 314 aa23.52■■□□□ 1.36
SEC13-201ENST00000337354 TSPY10P0CW01 314 aa23.52■■□□□ 1.36
SEC13-201ENST00000337354 MAGI2Q86UL8 1455 aa23.52■■□□□ 1.36
SEC13-201ENST00000337354 FAM50AQ14320 339 aaKnown RBP23.52■■□□□ 1.36
SEC13-201ENST00000337354 SYCP2Q9BX26 1530 aa23.51■■□□□ 1.35
SEC13-201ENST00000337354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.51■■□□□ 1.351e-6■■■■□ 25.4
SEC13-201ENST00000337354 KDM5CP41229 1560 aa23.5■■□□□ 1.35
SEC13-201ENST00000337354 HECW2Q9P2P5 1572 aa23.5■■□□□ 1.35
SEC13-201ENST00000337354 SPAG9O60271 1321 aaKnown RBP23.5■■□□□ 1.35
SEC13-201ENST00000337354 MYT1LQ9UL68 1186 aa23.49■■□□□ 1.35
SEC13-201ENST00000337354 PTPN23Q9H3S7 1636 aa23.48■■□□□ 1.35
SEC13-201ENST00000337354 MLH3Q9UHC1 1453 aa23.48■■□□□ 1.35
SEC13-201ENST00000337354 RRBP1Q9P2E9 1410 aaKnown RBP23.47■■□□□ 1.35
SEC13-201ENST00000337354 YEATS2Q9ULM3 1422 aa23.47■■□□□ 1.35
SEC13-201ENST00000337354 CCDC141Q6ZP82 1450 aa23.47■■□□□ 1.35
SEC13-201ENST00000337354 KDM4FA0A1W2PPD8 638 aa23.45■■□□□ 1.34
SEC13-201ENST00000337354 ARHGEF5Q12774 1597 aa23.45■■□□□ 1.34
SEC13-201ENST00000337354 RTEL1-TNFRSF6BF6WH68 1400 aa23.45■■□□□ 1.34
SEC13-201ENST00000337354 BCORL1Q5H9F3 1711 aa23.43■■□□□ 1.34
SEC13-201ENST00000337354 ABCC5O15440 1437 aa23.42■■□□□ 1.34
SEC13-201ENST00000337354 ABCA6Q8N139 1617 aa23.42■■□□□ 1.34
SEC13-201ENST00000337354 SIGLEC1Q9BZZ2 1709 aa23.42■■□□□ 1.34
SEC13-201ENST00000337354 DIP2CQ9Y2E4 1556 aa23.41■■□□□ 1.34
SEC13-201ENST00000337354 ARID4BQ4LE39 1312 aaPredicted RBP23.4■■□□□ 1.34
SEC13-201ENST00000337354 DAPK1P53355 1430 aa23.4■■□□□ 1.34
SEC13-201ENST00000337354 KIDINS220Q9ULH0 1771 aa23.38■■□□□ 1.33
SEC13-201ENST00000337354 C9orf84Q5VXU9 1444 aa23.37■■□□□ 1.33
SEC13-201ENST00000337354 ATP10AO60312 1499 aa23.36■■□□□ 1.33
SEC13-201ENST00000337354 ADAMTSL3P82987 1691 aa23.36■■□□□ 1.33
SEC13-201ENST00000337354 SHANK2Q9UPX8 1470 aa23.35■■□□□ 1.33
SEC13-201ENST00000337354 MADDQ8WXG6 1647 aa23.35■■□□□ 1.33
SEC13-201ENST00000337354 INO80Q9ULG1 1556 aaPredicted RBP23.35■■□□□ 1.33
SEC13-201ENST00000337354 ATP7AQ04656 1500 aa23.34■■□□□ 1.33
SEC13-201ENST00000337354 DNMT1P26358 1616 aaKnown RBP23.33■■□□□ 1.32
SEC13-201ENST00000337354 RIMS1Q86UR5 1692 aaKnown RBP23.31■■□□□ 1.32
SEC13-201ENST00000337354 ITGAEP38570 1179 aa23.31■■□□□ 1.32
SEC13-201ENST00000337354 CHIC2Q9UKJ5 165 aa23.31■■□□□ 1.32
SEC13-201ENST00000337354 FER1L4A9Z1Z3 1794 aa23.31■■□□□ 1.32
SEC13-201ENST00000337354 ANKRD30AQ9BXX3 1397 aa23.3■■□□□ 1.32
SEC13-201ENST00000337354 REREQ9P2R6 1566 aa23.3■■□□□ 1.32
SEC13-201ENST00000337354 MAST1Q9Y2H9 1570 aa23.3■■□□□ 1.32
SEC13-201ENST00000337354 DHX29Q7Z478 1369 aaKnown RBP23.28■■□□□ 1.32
SEC13-201ENST00000337354 PTPRKQ15262 1439 aa23.27■■□□□ 1.32
SEC13-201ENST00000337354 NCOA1Q15788 1441 aa23.27■■□□□ 1.32
SEC13-201ENST00000337354 RRP7BPQ9NSQ0 103 aa23.27■■□□□ 1.31
SEC13-201ENST00000337354 ROCK1Q13464 1354 aa23.26■■□□□ 1.31
SEC13-201ENST00000337354 A2MP01023 1474 aa23.25■■□□□ 1.31
SEC13-201ENST00000337354 ADGBQ8N7X0 1667 aa23.25■■□□□ 1.31
SEC13-201ENST00000337354 MLECQ14165 292 aa23.24■■□□□ 1.31
SEC13-201ENST00000337354 ADGRL2O95490 1459 aa23.24■■□□□ 1.31
SEC13-201ENST00000337354 KIF15Q9NS87 1388 aa23.23■■□□□ 1.31
SEC13-201ENST00000337354 PTPRMP28827 1452 aa23.2■■□□□ 1.31
SEC13-201ENST00000337354 AGLP35573 1532 aa23.2■■□□□ 1.3
SEC13-201ENST00000337354 PLXNC1O60486 1568 aa23.19■■□□□ 1.3
SEC13-201ENST00000337354 CROCC2H7BZ55 1655 aa23.19■■□□□ 1.3
SEC13-201ENST00000337354 DUOX2Q9NRD8 1548 aa23.17■■□□□ 1.3
SEC13-201ENST00000337354 KIF3BO15066 747 aa23.16■■□□□ 1.3
SEC13-201ENST00000337354 PPP6R1Q9UPN7 881 aa23.15■■□□□ 1.3
SEC13-201ENST00000337354 ERBINQ96RT1 1412 aa23.15■■□□□ 1.3
SEC13-201ENST00000337354 ANKRD50Q9ULJ7 1429 aa23.12■■□□□ 1.29
SEC13-201ENST00000337354 GGT6Q6P531 493 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms