RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 TMC1Q8TDI8 760 aa17.13■□□□□ 0.33
RETREG3-201ENST00000309428 LAS1LQ9Y4W2 734 aaKnown RBP17.12■□□□□ 0.33
RETREG3-201ENST00000309428 CHGAP10645 457 aaKnown RBP17.1■□□□□ 0.33
RETREG3-201ENST00000309428 FYCO1Q9BQS8 1478 aa17.1■□□□□ 0.33
RETREG3-201ENST00000309428 NAIPQ13075 1403 aa17.1■□□□□ 0.33
RETREG3-201ENST00000309428 PRDM2Q13029 1718 aa17.09■□□□□ 0.33
RETREG3-201ENST00000309428 PRG4Q92954 1404 aaPredicted RBP17.08■□□□□ 0.33
RETREG3-201ENST00000309428 CC2D1BQ5T0F9 858 aaKnown RBP17.08■□□□□ 0.32
RETREG3-201ENST00000309428 ARXQ96QS3 562 aa17.07■□□□□ 0.32
RETREG3-201ENST00000309428 NUP155O75694 1391 aa17.07■□□□□ 0.32
RETREG3-201ENST00000309428 UACAQ9BZF9 1416 aa17.07■□□□□ 0.32
RETREG3-201ENST00000309428 NOP58Q9Y2X3 529 aaKnown RBP17.06■□□□□ 0.32
RETREG3-201ENST00000309428 PPP4R2Q9NY27 417 aa17.05■□□□□ 0.32
RETREG3-201ENST00000309428 TIMELESSQ9UNS1 1208 aa17.04■□□□□ 0.32
RETREG3-201ENST00000309428 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.04■□□□□ 0.32
RETREG3-201ENST00000309428 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
RETREG3-201ENST00000309428 ST20-MTHFSA0A0A6YYL1 179 aa17.02■□□□□ 0.32
RETREG3-201ENST00000309428 PRKRIP1Q9H875 184 aaPredicted RBP17.01■□□□□ 0.31
RETREG3-201ENST00000309428 MSH5O43196 834 aa17.01■□□□□ 0.31
RETREG3-201ENST00000309428 HFM1A2PYH4 1435 aa17■□□□□ 0.31
RETREG3-201ENST00000309428 KIF7Q2M1P5 1343 aa16.99■□□□□ 0.31
RETREG3-201ENST00000309428 PLB1Q6P1J6 1458 aa16.98■□□□□ 0.31
RETREG3-201ENST00000309428 EPRSP07814 1512 aaKnown RBP16.96■□□□□ 0.31
RETREG3-201ENST00000309428 SNAPC4Q5SXM2 1469 aa16.96■□□□□ 0.31
RETREG3-201ENST00000309428 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
RETREG3-201ENST00000309428 TNNT2P45379 298 aaPredicted RBP16.93■□□□□ 0.3
RETREG3-201ENST00000309428 NEFMP07197 916 aa16.93■□□□□ 0.3
RETREG3-201ENST00000309428 EFCAB5A4FU69 1503 aa16.92■□□□□ 0.3
RETREG3-201ENST00000309428 MAGI3Q5TCQ9 1506 aa16.91■□□□□ 0.3
RETREG3-201ENST00000309428 NBPF1Q3BBV0 1214 aa16.91■□□□□ 0.3
RETREG3-201ENST00000309428 NUTM2DQ5VT03 806 aaPredicted RBP16.9■□□□□ 0.3
RETREG3-201ENST00000309428 GRIN2BQ13224 1484 aa16.9■□□□□ 0.3
RETREG3-201ENST00000309428 CCDC7Q96M83 1385 aa16.9■□□□□ 0.3
RETREG3-201ENST00000309428 PTPN23Q9H3S7 1636 aa16.88■□□□□ 0.29
RETREG3-201ENST00000309428 USP47Q96K76 1375 aa16.88■□□□□ 0.29
RETREG3-201ENST00000309428 KIF21AQ7Z4S6 1674 aa16.88■□□□□ 0.29
RETREG3-201ENST00000309428 PLPPR3Q6T4P5 718 aa16.88■□□□□ 0.29
RETREG3-201ENST00000309428 ANO8Q9HCE9 1232 aaPredicted RBP16.85■□□□□ 0.29
RETREG3-201ENST00000309428 ANKRD30AQ9BXX3 1397 aa16.85■□□□□ 0.29
RETREG3-201ENST00000309428 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
RETREG3-201ENST00000309428 PLIN1O60240 522 aa16.85■□□□□ 0.29
RETREG3-201ENST00000309428 NEUROD2Q15784 382 aa16.85■□□□□ 0.29
RETREG3-201ENST00000309428 ABCC5O15440 1437 aa16.84■□□□□ 0.29
RETREG3-201ENST00000309428 DAPK1P53355 1430 aa16.84■□□□□ 0.29
RETREG3-201ENST00000309428 LAMC3Q9Y6N6 1575 aa16.84■□□□□ 0.29
RETREG3-201ENST00000309428 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
RETREG3-201ENST00000309428 ROCK2O75116 1388 aaKnown RBP16.84■□□□□ 0.29
RETREG3-201ENST00000309428 SAFB2Q14151 953 aaKnown RBP eCLIP16.84■□□□□ 0.29
RETREG3-201ENST00000309428 SUPT6HQ7KZ85 1726 aaKnown RBP16.84■□□□□ 0.29
RETREG3-201ENST00000309428 KDM6BO15054 1643 aa16.84■□□□□ 0.29
RETREG3-201ENST00000309428 IQGAP2Q13576 1575 aa16.83■□□□□ 0.29
RETREG3-201ENST00000309428 CARMIL2Q6F5E8 1435 aa16.83■□□□□ 0.29
RETREG3-201ENST00000309428 MAP3K1Q13233 1512 aa16.83■□□□□ 0.28
RETREG3-201ENST00000309428 EHBP1L1Q8N3D4 1523 aa16.83■□□□□ 0.28
RETREG3-201ENST00000309428 CUL7Q14999 1698 aa16.82■□□□□ 0.28
RETREG3-201ENST00000309428 SKAP1Q86WV1 359 aa16.82■□□□□ 0.28
RETREG3-201ENST00000309428 AFAP1Q8N556 730 aa16.81■□□□□ 0.28
RETREG3-201ENST00000309428 PTPRGP23470 1445 aa16.8■□□□□ 0.28
RETREG3-201ENST00000309428 ANKRD50Q9ULJ7 1429 aa16.8■□□□□ 0.28
RETREG3-201ENST00000309428 ARHGEF11O15085 1522 aa16.79■□□□□ 0.28
RETREG3-201ENST00000309428 AKNAQ7Z591 1439 aa16.79■□□□□ 0.28
RETREG3-201ENST00000309428 ANKRD30BQ9BXX2 1392 aa16.78■□□□□ 0.28
RETREG3-201ENST00000309428 FANCIQ9NVI1 1328 aa16.78■□□□□ 0.28
RETREG3-201ENST00000309428 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
RETREG3-201ENST00000309428 KIF15Q9NS87 1388 aa16.78■□□□□ 0.28
RETREG3-201ENST00000309428 CTTNBP2Q8WZ74 1663 aa16.78■□□□□ 0.28
RETREG3-201ENST00000309428 CNTLNQ9NXG0 1405 aa16.77■□□□□ 0.27
RETREG3-201ENST00000309428 CDCA7LQ96GN5 454 aa16.77■□□□□ 0.27
RETREG3-201ENST00000309428 GGT6Q6P531 493 aa16.76■□□□□ 0.27
RETREG3-201ENST00000309428 CCDC146Q8IYE0 955 aa16.76■□□□□ 0.27
RETREG3-201ENST00000309428 IL27Q8NEV9 243 aa16.75■□□□□ 0.27
RETREG3-201ENST00000309428 SLC4A3P48751 1232 aa16.74■□□□□ 0.27
RETREG3-201ENST00000309428 PANK3Q9H999 370 aa16.74■□□□□ 0.27
RETREG3-201ENST00000309428 NUP153P49790 1475 aaKnown RBP16.74■□□□□ 0.27
RETREG3-201ENST00000309428 UGGT2Q9NYU1 1516 aa16.74■□□□□ 0.27
RETREG3-201ENST00000309428 KIF3BO15066 747 aa16.74■□□□□ 0.27
RETREG3-201ENST00000309428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.73■□□□□ 0.27
RETREG3-201ENST00000309428 HECW1Q76N89 1606 aa16.73■□□□□ 0.27
RETREG3-201ENST00000309428 RGS3P49796 1198 aa16.73■□□□□ 0.27
RETREG3-201ENST00000309428 IPO9Q96P70 1041 aaKnown RBP16.72■□□□□ 0.27
RETREG3-201ENST00000309428 GRIN2AQ12879 1464 aa16.71■□□□□ 0.27
RETREG3-201ENST00000309428 CANXP27824 592 aaKnown RBP16.71■□□□□ 0.27
RETREG3-201ENST00000309428 TROQ12816 1431 aaPredicted RBP16.71■□□□□ 0.27
RETREG3-201ENST00000309428 KIAA0586Q9BVV6 1533 aa16.71■□□□□ 0.26
RETREG3-201ENST00000309428 WDR43Q15061 677 aaKnown RBP eCLIP16.71■□□□□ 0.26
RETREG3-201ENST00000309428 EXOC6Q8TAG9 804 aa16.69■□□□□ 0.26
RETREG3-201ENST00000309428 KNSTRNQ9Y448 316 aa16.69■□□□□ 0.26
RETREG3-201ENST00000309428 CAMSAP2Q08AD1 1489 aa16.69■□□□□ 0.26
RETREG3-201ENST00000309428 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
RETREG3-201ENST00000309428 NCOA1Q15788 1441 aa16.68■□□□□ 0.26
RETREG3-201ENST00000309428 MIA2Q96PC5 1412 aa16.68■□□□□ 0.26
RETREG3-201ENST00000309428 ABCA5Q8WWZ7 1642 aa16.67■□□□□ 0.26
RETREG3-201ENST00000309428 C9orf84Q5VXU9 1444 aa16.67■□□□□ 0.26
RETREG3-201ENST00000309428 NUDCQ9Y266 331 aa16.66■□□□□ 0.26
RETREG3-201ENST00000309428 ZBED9Q6R2W3 1325 aa16.66■□□□□ 0.26
RETREG3-201ENST00000309428 PRKCSHP14314 528 aaPredicted RBP16.65■□□□□ 0.26
RETREG3-201ENST00000309428 CCDC144AA2RUR9 1427 aa16.65■□□□□ 0.26
RETREG3-201ENST00000309428 STK26Q9P289 416 aa16.64■□□□□ 0.25
RETREG3-201ENST00000309428 DISP1Q96F81 1524 aa16.64■□□□□ 0.25
RETREG3-201ENST00000309428 GPATCH8Q9UKJ3 1502 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms