RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 CDC42BPAQ5VT25 1732 aa28.27■■■□□ 2.12
HOXC4-201ENST00000303406 ABCC2Q92887 1545 aa28.26■■■□□ 2.11
HOXC4-201ENST00000303406 CFDP1Q9UEE9 299 aaPredicted RBP28.23■■■□□ 2.11
HOXC4-201ENST00000303406 CROCC2H7BZ55 1655 aa28.23■■■□□ 2.11
HOXC4-201ENST00000303406 ADGBQ8N7X0 1667 aa28.23■■■□□ 2.11
HOXC4-201ENST00000303406 ERCC6L2Q5T890 1561 aa28.22■■■□□ 2.11
HOXC4-201ENST00000303406 ADGRL2O95490 1459 aa28.21■■■□□ 2.11
HOXC4-201ENST00000303406 UHRF1BP1LA0JNW5 1464 aa28.2■■■□□ 2.1
HOXC4-201ENST00000303406 RRP7BPQ9NSQ0 103 aa28.19■■■□□ 2.1
HOXC4-201ENST00000303406 CHIC2Q9UKJ5 165 aa28.18■■■□□ 2.1
HOXC4-201ENST00000303406 ZNF644Q9H582 1327 aaPredicted RBP28.17■■■□□ 2.1
HOXC4-201ENST00000303406 KDM6BO15054 1643 aa28.16■■■□□ 2.1
HOXC4-201ENST00000303406 SHANK2Q9UPX8 1470 aa28.16■■■□□ 2.1
HOXC4-201ENST00000303406 PREX2Q70Z35 1606 aa28.13■■■□□ 2.09
HOXC4-201ENST00000303406 SIN3AQ96ST3 1273 aa28.12■■■□□ 2.09
HOXC4-201ENST00000303406 ARHGEF5Q12774 1597 aa28.11■■■□□ 2.09
HOXC4-201ENST00000303406 NCOA1Q15788 1441 aa28.08■■■□□ 2.09
HOXC4-201ENST00000303406 DENND4BO75064 1496 aaPredicted RBP28.06■■■□□ 2.08
HOXC4-201ENST00000303406 KDM5BQ9UGL1 1544 aa28.06■■■□□ 2.08
HOXC4-201ENST00000303406 CDC42BPBQ9Y5S2 1711 aa28.04■■■□□ 2.08
HOXC4-201ENST00000303406 NEUROD1Q13562 356 aa28.04■■■□□ 2.08
HOXC4-201ENST00000303406 ANKRD30AQ9BXX3 1397 aa28.03■■■□□ 2.08
HOXC4-201ENST00000303406 ZCCHC11Q5TAX3 1644 aaKnown RBP28.03■■■□□ 2.08
HOXC4-201ENST00000303406 PPP1R15AO75807 674 aaPredicted RBP28.01■■■□□ 2.07
HOXC4-201ENST00000303406 TONSLQ96HA7 1378 aa28■■■□□ 2.07
HOXC4-201ENST00000303406 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28■■■□□ 2.07
HOXC4-201ENST00000303406 SAMD9LQ8IVG5 1584 aa27.99■■■□□ 2.07
HOXC4-201ENST00000303406 ZNF777Q9ULD5 760 aaPredicted RBP27.99■■■□□ 2.07
HOXC4-201ENST00000303406 TRIM52Q96A61 297 aa27.98■■■□□ 2.07
HOXC4-201ENST00000303406 MPHOSPH9Q99550 1183 aa27.98■■■□□ 2.07
HOXC4-201ENST00000303406 TTC37Q6PGP7 1564 aa27.98■■■□□ 2.07
HOXC4-201ENST00000303406 MBD5Q9P267 1494 aa27.98■■■□□ 2.07
HOXC4-201ENST00000303406 RSPH4AQ5TD94 716 aa27.97■■■□□ 2.07
HOXC4-201ENST00000303406 C9orf84Q5VXU9 1444 aa27.97■■■□□ 2.07
HOXC4-201ENST00000303406 MYO5CQ9NQX4 1742 aa27.97■■■□□ 2.07
HOXC4-201ENST00000303406 CCDC141Q6ZP82 1450 aa27.94■■■□□ 2.06
HOXC4-201ENST00000303406 PLEKHH2Q8IVE3 1493 aa27.94■■■□□ 2.06
HOXC4-201ENST00000303406 MAST1Q9Y2H9 1570 aa27.93■■■□□ 2.06
HOXC4-201ENST00000303406 KIAA1107Q9UPP5 1409 aa27.9■■■□□ 2.06
HOXC4-201ENST00000303406 PZPP20742 1482 aa27.89■■■□□ 2.06
HOXC4-201ENST00000303406 ANKRD50Q9ULJ7 1429 aa27.89■■■□□ 2.05
HOXC4-201ENST00000303406 ARHGAP5Q13017 1502 aa27.88■■■□□ 2.05
HOXC4-201ENST00000303406 TSPY4P0CV99 314 aa27.88■■■□□ 2.05
HOXC4-201ENST00000303406 TSPY10P0CW01 314 aa27.88■■■□□ 2.05
HOXC4-201ENST00000303406 KDM5DQ9BY66 1539 aa27.87■■■□□ 2.05
HOXC4-201ENST00000303406 ANKRD30BQ9BXX2 1392 aa27.86■■■□□ 2.05
HOXC4-201ENST00000303406 ARAP3Q8WWN8 1544 aa27.86■■■□□ 2.05
HOXC4-201ENST00000303406 PLCH2O75038 1416 aa27.84■■■□□ 2.05
HOXC4-201ENST00000303406 RPRD2Q5VT52 1461 aaKnown RBP27.82■■■□□ 2.04
HOXC4-201ENST00000303406 SYCP2Q9BX26 1530 aa27.81■■■□□ 2.04
HOXC4-201ENST00000303406 SLC4A1APQ9BWU0 796 aaKnown RBP27.79■■■□□ 2.04
HOXC4-201ENST00000303406 KIF15Q9NS87 1388 aa27.79■■■□□ 2.04
HOXC4-201ENST00000303406 PLXNC1O60486 1568 aa27.78■■■□□ 2.04
HOXC4-201ENST00000303406 HNRNPMP52272 730 aaKnown RBP eCLIP27.78■■■□□ 2.04
HOXC4-201ENST00000303406 OSCARQ8IYS5 282 aa27.77■■■□□ 2.04
HOXC4-201ENST00000303406 MIER1Q8N108 512 aa27.77■■■□□ 2.04
HOXC4-201ENST00000303406 WDR7Q9Y4E6 1490 aa27.75■■■□□ 2.03
HOXC4-201ENST00000303406 ABCC1P33527 1531 aa27.73■■■□□ 2.03
HOXC4-201ENST00000303406 EFCAB2Q5VUJ9 269 aa27.71■■■□□ 2.03
HOXC4-201ENST00000303406 TEX14Q8IWB6 1497 aa27.69■■■□□ 2.02
HOXC4-201ENST00000303406 ABCA9Q8IUA7 1624 aa27.68■■■□□ 2.02
HOXC4-201ENST00000303406 KCNH8Q96L42 1107 aa27.68■■■□□ 2.02
HOXC4-201ENST00000303406 UNC13BO14795 1591 aa27.67■■■□□ 2.02
HOXC4-201ENST00000303406 ARHGEF12Q9NZN5 1544 aa27.67■■■□□ 2.02
HOXC4-201ENST00000303406 FOXD1Q16676 465 aa27.64■■■□□ 2.02
HOXC4-201ENST00000303406 DUOX2Q9NRD8 1548 aa27.64■■■□□ 2.02
HOXC4-201ENST00000303406 NUP155O75694 1391 aa27.64■■■□□ 2.01
HOXC4-201ENST00000303406 CENPBP07199 599 aaPredicted RBP27.62■■■□□ 2.01
HOXC4-201ENST00000303406 L3MBTL2Q969R5 705 aa27.62■■■□□ 2.01
HOXC4-201ENST00000303406 PKD2Q13563 968 aa27.6■■■□□ 2.01
HOXC4-201ENST00000303406 ERBINQ96RT1 1412 aa27.6■■■□□ 2.01
HOXC4-201ENST00000303406 RTEL1-TNFRSF6BF6WH68 1400 aa27.59■■■□□ 2.01
HOXC4-201ENST00000303406 ASXL2Q76L83 1435 aa27.57■■■□□ 2
HOXC4-201ENST00000303406 FAM135AQ9P2D6 1515 aa27.57■■■□□ 2
HOXC4-201ENST00000303406 MAGI2Q86UL8 1455 aa27.56■■■□□ 2
HOXC4-201ENST00000303406 IQGAP3Q86VI3 1631 aa27.54■■■□□ 2
HOXC4-201ENST00000303406 TRAPPC8Q9Y2L5 1435 aa27.52■■■□□ 2
HOXC4-201ENST00000303406 FANCAO15360 1455 aa27.5■■□□□ 1.99
HOXC4-201ENST00000303406 ZFYVE16Q7Z3T8 1539 aa27.49■■□□□ 1.99
HOXC4-201ENST00000303406 NPM1P06748 294 aaKnown RBP eCLIP27.46■■□□□ 1.99
HOXC4-201ENST00000303406 INO80Q9ULG1 1556 aaPredicted RBP27.45■■□□□ 1.99
HOXC4-201ENST00000303406 EIF4G2P78344 907 aaKnown RBP eCLIP27.44■■□□□ 1.98
HOXC4-201ENST00000303406 UHRF1BP1Q6BDS2 1440 aa27.44■■□□□ 1.98
HOXC4-201ENST00000303406 CFAP74Q9C0B2 1584 aa27.43■■□□□ 1.98
HOXC4-201ENST00000303406 SPAG9O60271 1321 aaKnown RBP27.42■■□□□ 1.98
HOXC4-201ENST00000303406 DDX10Q13206 875 aaKnown RBP27.41■■□□□ 1.98
HOXC4-201ENST00000303406 NBPF8Q3BBV2 869 aa27.41■■□□□ 1.98
HOXC4-201ENST00000303406 HSPA5P11021 654 aaKnown RBP27.4■■□□□ 1.98
HOXC4-201ENST00000303406 ATP10AO60312 1499 aa27.4■■□□□ 1.98
HOXC4-201ENST00000303406 ADGRL1O94910 1474 aa27.4■■□□□ 1.98
HOXC4-201ENST00000303406 ATP7AQ04656 1500 aa27.39■■□□□ 1.98
HOXC4-201ENST00000303406 DEPDC5O75140 1603 aa27.37■■□□□ 1.97
HOXC4-201ENST00000303406 HIRIP3Q9BW71 556 aaPredicted RBP27.36■■□□□ 1.97
HOXC4-201ENST00000303406 SPATA31E1Q6ZUB1 1445 aa27.35■■□□□ 1.97
HOXC4-201ENST00000303406 EIF2AK4Q9P2K8 1649 aaKnown RBP27.35■■□□□ 1.97
HOXC4-201ENST00000303406 SCAPERQ9BY12 1400 aa27.34■■□□□ 1.97
HOXC4-201ENST00000303406 POLR1AO95602 1720 aaPredicted RBP27.32■■□□□ 1.96
HOXC4-201ENST00000303406 RALGAPBQ86X10 1494 aa27.32■■□□□ 1.96
HOXC4-201ENST00000303406 AFAP1Q8N556 730 aa27.31■■□□□ 1.96
HOXC4-201ENST00000303406 CCDC144AA2RUR9 1427 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms