RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 RNF123Q5XPI4 1314 aa14.78□□□□□ -0.04
ZNF558-201ENST00000301475 GCC2Q8IWJ2 1684 aa14.77□□□□□ -0.04
ZNF558-201ENST00000301475 L3MBTL2Q969R5 705 aa14.77□□□□□ -0.05
ZNF558-201ENST00000301475 CCDC136Q96JN2 1154 aa14.77□□□□□ -0.05
ZNF558-201ENST00000301475 RRP7BPQ9NSQ0 103 aa14.77□□□□□ -0.05
ZNF558-201ENST00000301475 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
ZNF558-201ENST00000301475 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
ZNF558-201ENST00000301475 POLR1AO95602 1720 aaPredicted RBP14.75□□□□□ -0.05
ZNF558-201ENST00000301475 KIF7Q2M1P5 1343 aa14.75□□□□□ -0.05
ZNF558-201ENST00000301475 NUDCQ9Y266 331 aa14.74□□□□□ -0.05
ZNF558-201ENST00000301475 SUPT6HQ7KZ85 1726 aaKnown RBP14.74□□□□□ -0.05
ZNF558-201ENST00000301475 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
ZNF558-201ENST00000301475 CHIC2Q9UKJ5 165 aa14.73□□□□□ -0.05
ZNF558-201ENST00000301475 MRC2Q9UBG0 1479 aa14.73□□□□□ -0.05
ZNF558-201ENST00000301475 NBPF8Q3BBV2 869 aa14.73□□□□□ -0.05
ZNF558-201ENST00000301475 SPATA31E1Q6ZUB1 1445 aa14.72□□□□□ -0.05
ZNF558-201ENST00000301475 FOXD1Q16676 465 aa14.72□□□□□ -0.05
ZNF558-201ENST00000301475 UGGT2Q9NYU1 1516 aa14.71□□□□□ -0.05
ZNF558-201ENST00000301475 EHBP1L1Q8N3D4 1523 aa14.71□□□□□ -0.05
ZNF558-201ENST00000301475 SENP3-EIF4A1A0A087X0R7 540 aa14.71□□□□□ -0.06
ZNF558-201ENST00000301475 GRIN2BQ13224 1484 aa14.7□□□□□ -0.06
ZNF558-201ENST00000301475 RTN4Q9NQC3 1192 aaKnown RBP14.7□□□□□ -0.06
ZNF558-201ENST00000301475 TEX14Q8IWB6 1497 aa14.7□□□□□ -0.06
ZNF558-201ENST00000301475 ARHGEF11O15085 1522 aa14.7□□□□□ -0.06
ZNF558-201ENST00000301475 MAGI3Q5TCQ9 1506 aa14.69□□□□□ -0.06
ZNF558-201ENST00000301475 DHX29Q7Z478 1369 aaKnown RBP14.69□□□□□ -0.06
ZNF558-201ENST00000301475 MPHOSPH9Q99550 1183 aa14.69□□□□□ -0.06
ZNF558-201ENST00000301475 SAMD9Q5K651 1589 aa14.68□□□□□ -0.06
ZNF558-201ENST00000301475 CUL7Q14999 1698 aa14.68□□□□□ -0.06
ZNF558-201ENST00000301475 FBLN2P98095 1184 aa14.68□□□□□ -0.06
ZNF558-201ENST00000301475 ZNF608Q9ULD9 1512 aaPredicted RBP14.67□□□□□ -0.06
ZNF558-201ENST00000301475 CNGB1Q14028 1251 aaPredicted RBP14.67□□□□□ -0.06
ZNF558-201ENST00000301475 TCOF1Q13428 1488 aaKnown RBP14.67□□□□□ -0.06
ZNF558-201ENST00000301475 RPRD2Q5VT52 1461 aaKnown RBP14.66□□□□□ -0.06
ZNF558-201ENST00000301475 THOC2Q8NI27 1593 aaKnown RBP14.66□□□□□ -0.06
ZNF558-201ENST00000301475 NPM2Q86SE8 214 aaKnown RBP14.65□□□□□ -0.06
ZNF558-201ENST00000301475 LAS1LQ9Y4W2 734 aaKnown RBP14.64□□□□□ -0.07
ZNF558-201ENST00000301475 ANKRD30BQ9BXX2 1392 aa14.64□□□□□ -0.07
ZNF558-201ENST00000301475 TARBP1Q13395 1621 aaKnown RBP14.62□□□□□ -0.07
ZNF558-201ENST00000301475 BCORL1Q5H9F3 1711 aa14.62□□□□□ -0.07
ZNF558-201ENST00000301475 NEFMP07197 916 aa14.62□□□□□ -0.07
ZNF558-201ENST00000301475 ARID3CA6NKF2 412 aa14.6□□□□□ -0.07
ZNF558-201ENST00000301475 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.6□□□□□ -0.07
ZNF558-201ENST00000301475 MIA2Q96PC5 1412 aa14.59□□□□□ -0.07
ZNF558-201ENST00000301475 PNISRQ8TF01 805 aaKnown RBP14.59□□□□□ -0.07
ZNF558-201ENST00000301475 WASHC2CQ9Y4E1 1318 aa14.58□□□□□ -0.07
ZNF558-201ENST00000301475 PDE4AP27815 886 aa14.58□□□□□ -0.08
ZNF558-201ENST00000301475 EXOC6Q8TAG9 804 aa14.58□□□□□ -0.08
ZNF558-201ENST00000301475 USP35Q9P2H5 1018 aa14.57□□□□□ -0.08
ZNF558-201ENST00000301475 POLR3GLQ9BT43 218 aa14.57□□□□□ -0.08
ZNF558-201ENST00000301475 WDR62O43379 1518 aa14.56□□□□□ -0.08
ZNF558-201ENST00000301475 RRP1P56182 461 aaKnown RBP14.56□□□□□ -0.08
ZNF558-201ENST00000301475 TCERG1O14776 1098 aaKnown RBP14.56□□□□□ -0.08
ZNF558-201ENST00000301475 IFT140Q96RY7 1462 aa14.56□□□□□ -0.08
ZNF558-201ENST00000301475 BACH2Q9BYV9 841 aa14.55□□□□□ -0.08
ZNF558-201ENST00000301475 CHMP7Q8WUX9 453 aaPredicted RBP14.55□□□□□ -0.08
ZNF558-201ENST00000301475 USP47Q96K76 1375 aa14.54□□□□□ -0.08
ZNF558-201ENST00000301475 MBD5Q9P267 1494 aa14.54□□□□□ -0.08
ZNF558-201ENST00000301475 LRPPRCP42704 1394 aaKnown RBP14.53□□□□□ -0.08
ZNF558-201ENST00000301475 TMC1Q8TDI8 760 aa14.52□□□□□ -0.09
ZNF558-201ENST00000301475 BRPF3Q9ULD4 1205 aa14.52□□□□□ -0.09
ZNF558-201ENST00000301475 KDM5CP41229 1560 aa14.51□□□□□ -0.09
ZNF558-201ENST00000301475 PPM1GO15355 546 aaPredicted RBP14.5□□□□□ -0.09
ZNF558-201ENST00000301475 SLC4A1APQ9BWU0 796 aaKnown RBP14.5□□□□□ -0.09
ZNF558-201ENST00000301475 CDK13Q14004 1512 aaKnown RBP14.5□□□□□ -0.09
ZNF558-201ENST00000301475 DAPK1P53355 1430 aa14.49□□□□□ -0.09
ZNF558-201ENST00000301475 MS4A1P11836 297 aa14.49□□□□□ -0.09
ZNF558-201ENST00000301475 EPRSP07814 1512 aaKnown RBP14.49□□□□□ -0.09
ZNF558-201ENST00000301475 SKAP1Q86WV1 359 aa14.49□□□□□ -0.09
ZNF558-201ENST00000301475 RCAN3Q9UKA8 241 aa14.49□□□□□ -0.09
ZNF558-201ENST00000301475 KIF14Q15058 1648 aa14.48□□□□□ -0.09
ZNF558-201ENST00000301475 ROCK1Q13464 1354 aa14.48□□□□□ -0.09
ZNF558-201ENST00000301475 PBRM1Q86U86 1689 aa14.48□□□□□ -0.09
ZNF558-201ENST00000301475 ZNF326Q5BKZ1 582 aaKnown RBP14.47□□□□□ -0.09
ZNF558-201ENST00000301475 PZPP20742 1482 aa14.47□□□□□ -0.09
ZNF558-201ENST00000301475 DNMT1P26358 1616 aaKnown RBP14.47□□□□□ -0.09
ZNF558-201ENST00000301475 EIF4G3O43432 1585 aaKnown RBP14.46□□□□□ -0.09
ZNF558-201ENST00000301475 ABCC5O15440 1437 aa14.46□□□□□ -0.09
ZNF558-201ENST00000301475 BRD4O60885 1362 aaPredicted RBP14.45□□□□□ -0.1
ZNF558-201ENST00000301475 ARID4BQ4LE39 1312 aaPredicted RBP14.45□□□□□ -0.1
ZNF558-201ENST00000301475 KIF15Q9NS87 1388 aa14.45□□□□□ -0.1
ZNF558-201ENST00000301475 GSE1Q14687 1217 aa14.44□□□□□ -0.1
ZNF558-201ENST00000301475 ADAMTS12P58397 1594 aa14.44□□□□□ -0.1
ZNF558-201ENST00000301475 ROCK2O75116 1388 aaKnown RBP14.43□□□□□ -0.1
ZNF558-201ENST00000301475 NFKBIBQ15653 356 aa14.43□□□□□ -0.1
ZNF558-201ENST00000301475 MYBBP1AQ9BQG0 1328 aaKnown RBP14.43□□□□□ -0.1
ZNF558-201ENST00000301475 ZNF644Q9H582 1327 aaPredicted RBP14.43□□□□□ -0.1
ZNF558-201ENST00000301475 E9PCH4 1651 aa14.41□□□□□ -0.1
ZNF558-201ENST00000301475 UBE2Q2Q8WVN8 375 aa14.41□□□□□ -0.1
ZNF558-201ENST00000301475 SLC4A3P48751 1232 aa14.41□□□□□ -0.1
ZNF558-201ENST00000301475 PLIN1O60240 522 aa14.4□□□□□ -0.1
ZNF558-201ENST00000301475 FRAT1Q92837 279 aaPredicted RBP14.4□□□□□ -0.1
ZNF558-201ENST00000301475 CDCA7LQ96GN5 454 aa14.4□□□□□ -0.1
ZNF558-201ENST00000301475 DDRGK1Q96HY6 314 aa14.4□□□□□ -0.1
ZNF558-201ENST00000301475 RALGAPBQ86X10 1494 aa14.4□□□□□ -0.1
ZNF558-201ENST00000301475 GRIN2AQ12879 1464 aa14.39□□□□□ -0.11
ZNF558-201ENST00000301475 KIAA1107Q9UPP5 1409 aa14.39□□□□□ -0.11
ZNF558-201ENST00000301475 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
ZNF558-201ENST00000301475 RALBP1Q15311 655 aa14.37□□□□□ -0.11
ZNF558-201ENST00000301475 CRBNQ96SW2 442 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms