RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NEXNQ0ZGT2 675 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 HOMEZQ8IX15 550 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 KIF16BQ96L93 1317 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 CNTRLQ7Z7A1 2325 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 GSE1Q14687 1217 aa6.05□□□□□ -1.44
CSMD3-201ENST00000297405 RBM19Q9Y4C8 960 aaKnown RBP6.05□□□□□ -1.44
CSMD3-201ENST00000297405 NUMA1Q14980 2115 aa6.05□□□□□ -1.44
CSMD3-201ENST00000297405 ZNF771Q7L3S4 317 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-201ENST00000297405 FTSJ3Q8IY81 847 aaKnown RBP6.05□□□□□ -1.44
CSMD3-201ENST00000297405 ARXQ96QS3 562 aa6.05□□□□□ -1.44
CSMD3-201ENST00000297405 GOLGA6L7A0A1B0GV03 622 aa6.04□□□□□ -1.44
CSMD3-201ENST00000297405 EIF4G2P78344 907 aaKnown RBP eCLIP6.04□□□□□ -1.44
CSMD3-201ENST00000297405 HSP90B2PQ58FF3 399 aa6.04□□□□□ -1.44
CSMD3-201ENST00000297405 ANO8Q9HCE9 1232 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-201ENST00000297405 MNS1Q8NEH6 495 aa6.04□□□□□ -1.44
CSMD3-201ENST00000297405 AAMPQ13685 434 aa6.04□□□□□ -1.44
CSMD3-201ENST00000297405 ERCC4Q92889 916 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-201ENST00000297405 SUPT16HQ9Y5B9 1047 aaKnown RBP6.03□□□□□ -1.44
CSMD3-201ENST00000297405 BAZ1AQ9NRL2 1556 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-201ENST00000297405 AK7Q96M32 723 aa6.03□□□□□ -1.44
CSMD3-201ENST00000297405 CTR9Q6PD62 1173 aa6.03□□□□□ -1.44
CSMD3-201ENST00000297405 ZRSR2Q15696 482 aaKnown RBP6.03□□□□□ -1.44
CSMD3-201ENST00000297405 MAPK8IP3Q9UPT6 1336 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 CCP110O43303 1012 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 HDAC5Q9UQL6 1122 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 AXDND1Q5T1B0 1012 aaPredicted RBP6.02□□□□□ -1.45
CSMD3-201ENST00000297405 CHMP3Q9Y3E7 222 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 TPM1P09493 284 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 LOC105371045A0A1W2PR82 267 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 POLR3GO15318 223 aaPredicted RBP6.02□□□□□ -1.45
CSMD3-201ENST00000297405 FAM43AQ8N2R8 423 aa6.02□□□□□ -1.45
CSMD3-201ENST00000297405 MYO6Q9UM54 1294 aa6.01□□□□□ -1.45
CSMD3-201ENST00000297405 DYDC1Q8WWB3 177 aa6.01□□□□□ -1.45
CSMD3-201ENST00000297405 TSR1Q2NL82 804 aaKnown RBP6.01□□□□□ -1.45
CSMD3-201ENST00000297405 PDIA4P13667 645 aaKnown RBP6.01□□□□□ -1.45
CSMD3-201ENST00000297405 CFAP53Q96M91 514 aa6.01□□□□□ -1.45
CSMD3-201ENST00000297405 TAF7LQ5H9L4 462 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 MYH6P13533 1939 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 GOLGA6L10A6NI86 522 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 CFAP65Q6ZU64 1925 aaKnown RBP6□□□□□ -1.45
CSMD3-201ENST00000297405 RTN4Q9NQC3 1192 aaKnown RBP6□□□□□ -1.45
CSMD3-201ENST00000297405 FAM9BQ8IZU0 186 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 UBE2Q2Q8WVN8 375 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 NGEFQ8N5V2 710 aa6□□□□□ -1.45
CSMD3-201ENST00000297405 SETSIPP0DME0 302 aa5.99□□□□□ -1.45
CSMD3-201ENST00000297405 RSF1Q96T23 1441 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-201ENST00000297405 CCDC88CQ9P219 2028 aa5.99□□□□□ -1.45
CSMD3-201ENST00000297405 CC2D1BQ5T0F9 858 aaKnown RBP5.99□□□□□ -1.45
CSMD3-201ENST00000297405 KAT6AQ92794 2004 aa5.99□□□□□ -1.45
CSMD3-201ENST00000297405 DDX11Q96FC9 970 aa5.99□□□□□ -1.45
CSMD3-201ENST00000297405 LEKR1Q6ZMV7 388 aa5.99□□□□□ -1.45
CSMD3-201ENST00000297405 SCN8AQ9UQD0 1980 aa5.98□□□□□ -1.45
CSMD3-201ENST00000297405 IPO7O95373 1038 aaKnown RBP5.98□□□□□ -1.45
CSMD3-201ENST00000297405 PRKCSHP14314 528 aaPredicted RBP5.98□□□□□ -1.45
CSMD3-201ENST00000297405 U2SURPO15042 1029 aaKnown RBP5.98□□□□□ -1.45
CSMD3-201ENST00000297405 CALCOCO1Q9P1Z2 691 aa5.98□□□□□ -1.45
CSMD3-201ENST00000297405 IL27Q8NEV9 243 aa5.98□□□□□ -1.45
CSMD3-201ENST00000297405 ROCK2O75116 1388 aaKnown RBP5.98□□□□□ -1.45
CSMD3-201ENST00000297405 IPO8O15397 1037 aaKnown RBP5.97□□□□□ -1.45
CSMD3-201ENST00000297405 ST18O60284 1047 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 DDX10Q13206 875 aaKnown RBP5.97□□□□□ -1.45
CSMD3-201ENST00000297405 HOOK1Q9UJC3 728 aaKnown RBP5.97□□□□□ -1.45
CSMD3-201ENST00000297405 RUFY1Q96T51 708 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 H0YHG0 523 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 CSRNP3Q8WYN3 585 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 PDE3BQ13370 1112 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 FGD1P98174 961 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 MIER1Q8N108 512 aa5.97□□□□□ -1.45
CSMD3-201ENST00000297405 PLCB2Q00722 1185 aa5.96□□□□□ -1.45
CSMD3-201ENST00000297405 RNF20Q5VTR2 975 aa5.96□□□□□ -1.45
CSMD3-201ENST00000297405 TXLNBQ8N3L3 684 aa5.96□□□□□ -1.45
CSMD3-201ENST00000297405 GOLGA6L19H0YKK7 550 aa5.96□□□□□ -1.46
CSMD3-201ENST00000297405 EVPLQ92817 2033 aa5.96□□□□□ -1.46
CSMD3-201ENST00000297405 KIAA1211Q6ZU35 1233 aa5.96□□□□□ -1.46
CSMD3-201ENST00000297405 CACNA1FO60840 1977 aa5.96□□□□□ -1.46
CSMD3-201ENST00000297405 KIF2AO00139 706 aaPredicted RBP5.96□□□□□ -1.46
CSMD3-201ENST00000297405 PMFBP1Q8TBY8 1022 aa5.96□□□□□ -1.46
CSMD3-201ENST00000297405 EIF3JO75822 258 aaKnown RBP5.96□□□□□ -1.46
CSMD3-201ENST00000297405 LETM1O95202 739 aaPredicted RBP5.96□□□□□ -1.46
CSMD3-201ENST00000297405 PDCL3Q9H2J4 239 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 GOLGA6L10A0A0M3HER8 536 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 LUZP1Q86V48 1076 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 RBM28Q9NW13 759 aaKnown RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 MRE11P49959 708 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 SH3BGRP55822 239 aaPredicted RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 ARID3AQ99856 593 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 ANKRD20A12PQ8NF67 263 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 CEP89Q96ST8 783 aa5.95□□□□□ -1.46
CSMD3-201ENST00000297405 EIF3AQ14152 1382 aaKnown RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 KTN1Q86UP2 1357 aaKnown RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 NAT10Q9H0A0 1025 aaKnown RBP5.95□□□□□ -1.46
CSMD3-201ENST00000297405 GBP2P32456 591 aaPredicted RBP5.94□□□□□ -1.46
CSMD3-201ENST00000297405 DNAJC2Q99543 621 aaKnown RBP5.94□□□□□ -1.46
CSMD3-201ENST00000297405 PDE4CQ08493 712 aa5.94□□□□□ -1.46
CSMD3-201ENST00000297405 KIF7Q2M1P5 1343 aa5.94□□□□□ -1.46
CSMD3-201ENST00000297405 CCDC39Q9UFE4 941 aa5.94□□□□□ -1.46
CSMD3-201ENST00000297405 FYB1O15117 783 aa5.94□□□□□ -1.46
CSMD3-201ENST00000297405 KIAA0754O94854 1291 aa5.94□□□□□ -1.46
CSMD3-201ENST00000297405 IQCEQ6IPM2 695 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms