RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 MYO5CQ9NQX4 1742 aa22.86■■□□□ 1.25
TPM1-202ENST00000288398 TROQ12816 1431 aaPredicted RBP22.86■■□□□ 1.25
TPM1-202ENST00000288398 MADDQ8WXG6 1647 aa22.85■■□□□ 1.25
TPM1-202ENST00000288398 ARHGAP5Q13017 1502 aa22.82■■□□□ 1.24
TPM1-202ENST00000288398 CCDC18Q5T9S5 1454 aa22.81■■□□□ 1.24
TPM1-202ENST00000288398 MYT1LQ9UL68 1186 aa22.81■■□□□ 1.24
TPM1-202ENST00000288398 YEATS2Q9ULM3 1422 aa22.81■■□□□ 1.24
TPM1-202ENST00000288398 ILDR1Q86SU0 546 aaPredicted RBP22.79■■□□□ 1.24
TPM1-202ENST00000288398 CASKIN1Q8WXD9 1431 aa22.79■■□□□ 1.24
TPM1-202ENST00000288398 MLECQ14165 292 aa22.78■■□□□ 1.24
TPM1-202ENST00000288398 PLPPR3Q6T4P5 718 aa22.78■■□□□ 1.24
TPM1-202ENST00000288398 RIMS1Q86UR5 1692 aaKnown RBP22.77■■□□□ 1.24
TPM1-202ENST00000288398 PCF11O94913 1555 aaKnown RBP22.77■■□□□ 1.24
TPM1-202ENST00000288398 ZNF518AQ6AHZ1 1483 aa22.76■■□□□ 1.23
TPM1-202ENST00000288398 ATP10AO60312 1499 aa22.73■■□□□ 1.23
TPM1-202ENST00000288398 C9orf84Q5VXU9 1444 aa22.73■■□□□ 1.23
TPM1-202ENST00000288398 LRRIQ1Q96JM4 1722 aa22.72■■□□□ 1.23
TPM1-202ENST00000288398 FYCO1Q9BQS8 1478 aa22.72■■□□□ 1.23
TPM1-202ENST00000288398 AFAP1Q8N556 730 aa22.68■■□□□ 1.22
TPM1-202ENST00000288398 FER1L4A9Z1Z3 1794 aa22.66■■□□□ 1.22
TPM1-202ENST00000288398 PREX2Q70Z35 1606 aa22.66■■□□□ 1.22
TPM1-202ENST00000288398 LMTK3Q96Q04 1460 aa22.65■■□□□ 1.22
TPM1-202ENST00000288398 KDM5CP41229 1560 aa22.64■■□□□ 1.22
TPM1-202ENST00000288398 SIGLEC1Q9BZZ2 1709 aa22.64■■□□□ 1.21
TPM1-202ENST00000288398 CDC42BPBQ9Y5S2 1711 aa22.63■■□□□ 1.21
TPM1-202ENST00000288398 ZNF777Q9ULD5 760 aaPredicted RBP22.62■■□□□ 1.21
TPM1-202ENST00000288398 ABCC1P33527 1531 aa22.61■■□□□ 1.21
TPM1-202ENST00000288398 ESF1Q9H501 851 aaKnown RBP22.6■■□□□ 1.21
TPM1-202ENST00000288398 ARHGEF12Q9NZN5 1544 aa22.6■■□□□ 1.21
TPM1-202ENST00000288398 MLH3Q9UHC1 1453 aa22.59■■□□□ 1.21
TPM1-202ENST00000288398 HSPA2P54652 639 aa22.58■■□□□ 1.21
TPM1-202ENST00000288398 DIP2CQ9Y2E4 1556 aa22.57■■□□□ 1.2
TPM1-202ENST00000288398 TRAPPC8Q9Y2L5 1435 aa22.57■■□□□ 1.2
TPM1-202ENST00000288398 ITSN2Q9NZM3 1697 aa22.56■■□□□ 1.2
TPM1-202ENST00000288398 MTUS2Q5JR59 1369 aa22.56■■□□□ 1.2
TPM1-202ENST00000288398 CDC42BPAQ5VT25 1732 aa22.55■■□□□ 1.2
TPM1-202ENST00000288398 REREQ9P2R6 1566 aa22.54■■□□□ 1.2
TPM1-202ENST00000288398 CCNB3Q8WWL7 1395 aa22.53■■□□□ 1.2
TPM1-202ENST00000288398 ABCA6Q8N139 1617 aa22.53■■□□□ 1.2
TPM1-202ENST00000288398 FBXO41Q8TF61 875 aa22.52■■□□□ 1.2
TPM1-202ENST00000288398 CFDP1Q9UEE9 299 aaPredicted RBP22.52■■□□□ 1.2
TPM1-202ENST00000288398 CEBPAP49715 358 aaPredicted RBP22.51■■□□□ 1.19
TPM1-202ENST00000288398 GPATCH8Q9UKJ3 1502 aaKnown RBP22.5■■□□□ 1.19
TPM1-202ENST00000288398 SPAG9O60271 1321 aaKnown RBP22.5■■□□□ 1.19
TPM1-202ENST00000288398 PLEKHH2Q8IVE3 1493 aa22.49■■□□□ 1.19
TPM1-202ENST00000288398 AGLP35573 1532 aa22.48■■□□□ 1.19
TPM1-202ENST00000288398 SYCP2Q9BX26 1530 aa22.48■■□□□ 1.19
TPM1-202ENST00000288398 SAMD9LQ8IVG5 1584 aa22.47■■□□□ 1.19
TPM1-202ENST00000288398 PREX1Q8TCU6 1659 aa22.47■■□□□ 1.19
TPM1-202ENST00000288398 HNRNPMP52272 730 aaKnown RBP eCLIP22.47■■□□□ 1.19
TPM1-202ENST00000288398 CEP162Q5TB80 1403 aa22.46■■□□□ 1.19
TPM1-202ENST00000288398 UHRF1BP1Q6BDS2 1440 aa22.46■■□□□ 1.19
TPM1-202ENST00000288398 KIDINS220Q9ULH0 1771 aa22.45■■□□□ 1.18
TPM1-202ENST00000288398 KIAA1107Q9UPP5 1409 aa22.43■■□□□ 1.18
TPM1-202ENST00000288398 EHBP1L1Q8N3D4 1523 aa22.42■■□□□ 1.18
TPM1-202ENST00000288398 CNTLNQ9NXG0 1405 aa22.42■■□□□ 1.18
TPM1-202ENST00000288398 DMRT2Q9Y5R5 561 aa22.4■■□□□ 1.18
TPM1-202ENST00000288398 ATP7AQ04656 1500 aa22.39■■□□□ 1.17
TPM1-202ENST00000288398 C3P01024 1663 aa22.36■■□□□ 1.17
TPM1-202ENST00000288398 SETD1BQ9UPS6 1966 aaKnown RBP22.34■■□□□ 1.17
TPM1-202ENST00000288398 TIAM1Q13009 1591 aa22.34■■□□□ 1.17
TPM1-202ENST00000288398 SUPT6HQ7KZ85 1726 aaKnown RBP22.34■■□□□ 1.17
TPM1-202ENST00000288398 A2MP01023 1474 aa22.34■■□□□ 1.17
TPM1-202ENST00000288398 INO80Q9ULG1 1556 aaPredicted RBP22.33■■□□□ 1.16
TPM1-202ENST00000288398 CERKQ8TCT0 537 aa22.31■■□□□ 1.16
TPM1-202ENST00000288398 ZNF644Q9H582 1327 aaPredicted RBP22.31■■□□□ 1.16
TPM1-202ENST00000288398 GGT6Q6P531 493 aa22.3■■□□□ 1.16
TPM1-202ENST00000288398 MROH2AA6NES4 1674 aa22.28■■□□□ 1.16
TPM1-202ENST00000288398 ZMYM3Q14202 1370 aa22.27■■□□□ 1.16
TPM1-202ENST00000288398 PLXNC1O60486 1568 aa22.27■■□□□ 1.16
TPM1-202ENST00000288398 NPATQ14207 1427 aa22.27■■□□□ 1.16
TPM1-202ENST00000288398 NCOA2Q15596 1464 aa22.27■■□□□ 1.16
TPM1-202ENST00000288398 ADGBQ8N7X0 1667 aa22.26■■□□□ 1.15
TPM1-202ENST00000288398 RTEL1-TNFRSF6BF6WH68 1400 aa22.24■■□□□ 1.15
TPM1-202ENST00000288398 PPP6R1Q9UPN7 881 aa22.24■■□□□ 1.15
TPM1-202ENST00000288398 MBD5Q9P267 1494 aa22.23■■□□□ 1.15
TPM1-202ENST00000288398 RSPH4AQ5TD94 716 aa22.23■■□□□ 1.15
TPM1-202ENST00000288398 CLTCQ00610 1675 aaKnown RBP22.23■■□□□ 1.15
TPM1-202ENST00000288398 VPS8Q8N3P4 1428 aa22.23■■□□□ 1.15
TPM1-202ENST00000288398 CCDC141Q6ZP82 1450 aa22.22■■□□□ 1.15
TPM1-202ENST00000288398 STRCQ7RTU9 1775 aa22.22■■□□□ 1.15
TPM1-202ENST00000288398 CAMSAP2Q08AD1 1489 aa22.22■■□□□ 1.15
TPM1-202ENST00000288398 LOC105371045A0A1W2PR82 267 aa22.21■■□□□ 1.15
TPM1-202ENST00000288398 PTPRTO14522 1441 aa22.2■■□□□ 1.14
TPM1-202ENST00000288398 TSPY4P0CV99 314 aa22.19■■□□□ 1.14
TPM1-202ENST00000288398 TSPY10P0CW01 314 aa22.19■■□□□ 1.14
TPM1-202ENST00000288398 DHX29Q7Z478 1369 aaKnown RBP22.18■■□□□ 1.14
TPM1-202ENST00000288398 NCOA1Q15788 1441 aa22.17■■□□□ 1.14
TPM1-202ENST00000288398 KIF3BO15066 747 aa22.16■■□□□ 1.14
TPM1-202ENST00000288398 LRRC9Q6ZRR7 1453 aa22.15■■□□□ 1.14
TPM1-202ENST00000288398 CAMSAP1Q5T5Y3 1602 aa22.15■■□□□ 1.14
TPM1-202ENST00000288398 PTPRKQ15262 1439 aa22.14■■□□□ 1.13
TPM1-202ENST00000288398 MYO3AQ8NEV4 1616 aa22.13■■□□□ 1.13
TPM1-202ENST00000288398 APLP2Q06481 763 aa22.12■■□□□ 1.13
TPM1-202ENST00000288398 ARHGEF5Q12774 1597 aa22.11■■□□□ 1.13
TPM1-202ENST00000288398 WASHC2CQ9Y4E1 1318 aa22.1■■□□□ 1.13
TPM1-202ENST00000288398 CEP170BQ9Y4F5 1589 aaPredicted RBP22.09■■□□□ 1.13
TPM1-202ENST00000288398 NCKAP5LQ9HCH0 1330 aa22.08■■□□□ 1.13
TPM1-202ENST00000288398 ZNF142P52746 1687 aaPredicted RBP22.08■■□□□ 1.13
TPM1-202ENST00000288398 MAP3K1Q13233 1512 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms