RNA–Protein interactions for RNA: ENST00000272793.9

UBR3-201, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UBR3, Length 8,005 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-201ENST00000272793 VSIG10Q8N0Z9 540 aa19.85■□□□□ 0.77
UBR3-201ENST00000272793 MAPK8IP3Q9UPT6 1336 aa19.84■□□□□ 0.77
UBR3-201ENST00000272793 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.82■□□□□ 0.762e-6■■■■■ 122.4
UBR3-201ENST00000272793 PPP4R2Q9NY27 417 aa19.82■□□□□ 0.76
UBR3-201ENST00000272793 CHMP4BQ9H444 224 aaKnown RBP19.82■□□□□ 0.76
UBR3-201ENST00000272793 EIF4G2P78344 907 aaKnown RBP eCLIP19.81■□□□□ 0.762e-10■■■□□ 17.3
UBR3-201ENST00000272793 TMX4Q9H1E5 349 aaPredicted RBP19.81■□□□□ 0.76
UBR3-201ENST00000272793 HMMRO75330 724 aa19.8■□□□□ 0.76
UBR3-201ENST00000272793 MARCH6O60337 910 aa19.78■□□□□ 0.76
UBR3-201ENST00000272793 NPM1P06748 294 aaKnown RBP eCLIP19.78■□□□□ 0.76
UBR3-201ENST00000272793 TEX35Q5T0J7 233 aa19.78■□□□□ 0.76
UBR3-201ENST00000272793 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.76
UBR3-201ENST00000272793 APBB1O00213 710 aa19.77■□□□□ 0.75
UBR3-201ENST00000272793 CSRNP3Q8WYN3 585 aa19.76■□□□□ 0.75
UBR3-201ENST00000272793 NOM1Q5C9Z4 860 aaKnown RBP19.76■□□□□ 0.75
UBR3-201ENST00000272793 SLKQ9H2G2 1235 aaPredicted RBP19.75■□□□□ 0.75
UBR3-201ENST00000272793 RBM19Q9Y4C8 960 aaKnown RBP19.75■□□□□ 0.75
UBR3-201ENST00000272793 G3V3G9 751 aa19.74■□□□□ 0.75
UBR3-201ENST00000272793 DCAF8Q5TAQ9 597 aa19.74■□□□□ 0.75
UBR3-201ENST00000272793 CCDC191Q8NCU4 936 aa19.73■□□□□ 0.75
UBR3-201ENST00000272793 KNSTRNQ9Y448 316 aa19.73■□□□□ 0.75
UBR3-201ENST00000272793 PHF14O94880 888 aa19.72■□□□□ 0.75
UBR3-201ENST00000272793 RGL3Q3MIN7 710 aa19.72■□□□□ 0.75
UBR3-201ENST00000272793 ZNF592Q92610 1267 aa19.72■□□□□ 0.75
UBR3-201ENST00000272793 CALD1Q05682 793 aaKnown RBP19.71■□□□□ 0.75
UBR3-201ENST00000272793 TPM2P07951 284 aa19.71■□□□□ 0.75
UBR3-201ENST00000272793 CSPP1Q1MSJ5 1256 aa19.71■□□□□ 0.75
UBR3-201ENST00000272793 RDXP35241 583 aaKnown RBP19.7■□□□□ 0.74
UBR3-201ENST00000272793 TCEAL9Q9UHQ7 104 aa19.7■□□□□ 0.74
UBR3-201ENST00000272793 RUFY1Q96T51 708 aa19.69■□□□□ 0.74
UBR3-201ENST00000272793 GOLGA6L3A6NEY3 463 aa19.69■□□□□ 0.74
UBR3-201ENST00000272793 MS4A1P11836 297 aa19.68■□□□□ 0.74
UBR3-201ENST00000272793 CFAP44Q96MT7 982 aa19.68■□□□□ 0.74
UBR3-201ENST00000272793 TPM1P09493 284 aa19.67■□□□□ 0.74
UBR3-201ENST00000272793 PCMTD1Q96MG8 357 aaPredicted RBP19.66■□□□□ 0.74
UBR3-201ENST00000272793 U2SURPO15042 1029 aaKnown RBP19.66■□□□□ 0.74
UBR3-201ENST00000272793 HSP90AB3PQ58FF7 597 aa19.65■□□□□ 0.74
UBR3-201ENST00000272793 AK7Q96M32 723 aa19.65■□□□□ 0.74
UBR3-201ENST00000272793 GOLGA6L19H0YKK7 550 aa19.65■□□□□ 0.74
UBR3-201ENST00000272793 ODF2Q5BJF6 829 aa19.64■□□□□ 0.74
UBR3-201ENST00000272793 CC2D1BQ5T0F9 858 aaKnown RBP19.64■□□□□ 0.74
UBR3-201ENST00000272793 ZNF330Q9Y3S2 320 aaPredicted RBP19.64■□□□□ 0.74
UBR3-201ENST00000272793 SF3A1Q15459 793 aaKnown RBP19.64■□□□□ 0.73
UBR3-201ENST00000272793 GORABQ5T7V8 394 aa19.64■□□□□ 0.73
UBR3-201ENST00000272793 TIMELESSQ9UNS1 1208 aa19.64■□□□□ 0.73
UBR3-201ENST00000272793 RRP7BPQ9NSQ0 103 aa19.63■□□□□ 0.73
UBR3-201ENST00000272793 CHMP3Q9Y3E7 222 aa19.63■□□□□ 0.73
UBR3-201ENST00000272793 NUDCQ9Y266 331 aa19.63■□□□□ 0.73
UBR3-201ENST00000272793 H0YHG0 523 aa19.62■□□□□ 0.73
UBR3-201ENST00000272793 TRIM6-TRIM34B2RNG4 842 aa19.6■□□□□ 0.73
UBR3-201ENST00000272793 SOX12O15370 315 aa19.6■□□□□ 0.73
UBR3-201ENST00000272793 FOXD4L5Q5VV16 416 aaPredicted RBP19.59■□□□□ 0.73
UBR3-201ENST00000272793 FOXD4L4Q8WXT5 416 aaPredicted RBP19.59■□□□□ 0.73
UBR3-201ENST00000272793 FOXD4L1Q9NU39 408 aa19.59■□□□□ 0.73
UBR3-201ENST00000272793 NOL8Q76FK4 1167 aaKnown RBP19.58■□□□□ 0.73
UBR3-201ENST00000272793 BCL11BQ9C0K0 894 aaPredicted RBP19.58■□□□□ 0.73
UBR3-201ENST00000272793 BCCIPQ9P287 314 aaKnown RBP eCLIP19.58■□□□□ 0.72
UBR3-201ENST00000272793 SKIDA1Q1XH10 827 aa19.57■□□□□ 0.72
UBR3-201ENST00000272793 GPATCH3Q96I76 525 aa19.57■□□□□ 0.72
UBR3-201ENST00000272793 NAP1L1P55209 391 aaKnown RBP19.56■□□□□ 0.72
UBR3-201ENST00000272793 DHX37Q8IY37 1157 aaKnown RBP19.56■□□□□ 0.72
UBR3-201ENST00000272793 TSPY4P0CV99 314 aa19.56■□□□□ 0.72
UBR3-201ENST00000272793 TSPY10P0CW01 314 aa19.56■□□□□ 0.72
UBR3-201ENST00000272793 CDR1P51861 262 aa19.56■□□□□ 0.72
UBR3-201ENST00000272793 CT47A1Q5JQC4 288 aaPredicted RBP19.56■□□□□ 0.72
UBR3-201ENST00000272793 DYDC1Q8WWB3 177 aa19.55■□□□□ 0.72
UBR3-201ENST00000272793 DCTN1Q14203 1278 aa19.55■□□□□ 0.72
UBR3-201ENST00000272793 ZFYVE27Q5T4F4 411 aa19.54■□□□□ 0.72
UBR3-201ENST00000272793 IPO7O95373 1038 aaKnown RBP19.54■□□□□ 0.72
UBR3-201ENST00000272793 RSPH6AQ9H0K4 717 aa19.54■□□□□ 0.72
UBR3-201ENST00000272793 H3BQV1 296 aa19.53■□□□□ 0.72
UBR3-201ENST00000272793 IFFO2Q5TF58 517 aa19.53■□□□□ 0.72
UBR3-201ENST00000272793 HSP90AB2PQ58FF8 381 aa19.53■□□□□ 0.72
UBR3-201ENST00000272793 HOMER1Q86YM7 354 aa19.53■□□□□ 0.72
UBR3-201ENST00000272793 ZRSR2Q15696 482 aaKnown RBP19.52■□□□□ 0.72
UBR3-201ENST00000272793 TOMM22Q9NS69 142 aa19.52■□□□□ 0.71
UBR3-201ENST00000272793 RTF1Q92541 710 aaKnown RBP19.51■□□□□ 0.71
UBR3-201ENST00000272793 PAF1Q8N7H5 531 aa19.51■□□□□ 0.71
UBR3-201ENST00000272793 FRAT2O75474 233 aaPredicted RBP19.5■□□□□ 0.71
UBR3-201ENST00000272793 FOXD4L6Q3SYB3 417 aaPredicted RBP19.5■□□□□ 0.71
UBR3-201ENST00000272793 FOXD4L3Q6VB84 417 aaPredicted RBP19.5■□□□□ 0.71
UBR3-201ENST00000272793 FAM13BQ9NYF5 915 aa19.49■□□□□ 0.71
UBR3-201ENST00000272793 NEXNQ0ZGT2 675 aa19.49■□□□□ 0.71
UBR3-201ENST00000272793 BECN2A8MW95 431 aa19.49■□□□□ 0.71
UBR3-201ENST00000272793 RAD21O60216 631 aa19.49■□□□□ 0.71
UBR3-201ENST00000272793 KIF16BQ96L93 1317 aa19.49■□□□□ 0.71
UBR3-201ENST00000272793 CDCA8Q53HL2 280 aa19.48■□□□□ 0.71
UBR3-201ENST00000272793 SEPT11Q9NVA2 429 aaKnown RBP19.48■□□□□ 0.71
UBR3-201ENST00000272793 NEFHP12036 1026 aa19.47■□□□□ 0.71
UBR3-201ENST00000272793 CARD11Q9BXL7 1154 aa19.47■□□□□ 0.71
UBR3-201ENST00000272793 POGKQ9P215 609 aa19.47■□□□□ 0.71
UBR3-201ENST00000272793 CLASRPQ8N2M8 674 aaKnown RBP19.45■□□□□ 0.7
UBR3-201ENST00000272793 MFAP1P55081 439 aaKnown RBP19.45■□□□□ 0.7
UBR3-201ENST00000272793 CWC15Q9P013 229 aaKnown RBP19.45■□□□□ 0.7
UBR3-201ENST00000272793 DCAF1Q9Y4B6 1507 aa19.45■□□□□ 0.7
UBR3-201ENST00000272793 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.44■□□□□ 0.7
UBR3-201ENST00000272793 ANKRD62A6NC57 917 aa19.44■□□□□ 0.7
UBR3-201ENST00000272793 CTDP1Q9Y5B0 961 aaPredicted RBP19.44■□□□□ 0.7
UBR3-201ENST00000272793 AKAP17AQ02040 695 aaKnown RBP19.43■□□□□ 0.7
UBR3-201ENST00000272793 HSP90B2PQ58FF3 399 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms