RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 RAPGEF3O95398 923 aa15.12■□□□□ 0.01
TPM3-201ENST00000271850 NEO1Q92859 1461 aa15.11■□□□□ 0.01
TPM3-201ENST00000271850 EFCAB5A4FU69 1503 aa15.09■□□□□ 0.01
TPM3-201ENST00000271850 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.09■□□□□ 0.013e-7■□□□□ 8.5
TPM3-201ENST00000271850 ADAMTSL3P82987 1691 aa15.09■□□□□ 0.01
TPM3-201ENST00000271850 PHLDB1Q86UU1 1377 aa15.09■□□□□ 0.01
TPM3-201ENST00000271850 TTC37Q6PGP7 1564 aa15.08■□□□□ 0
TPM3-201ENST00000271850 CDK13Q14004 1512 aaKnown RBP15.07■□□□□ 0
TPM3-201ENST00000271850 ILDR1Q86SU0 546 aaPredicted RBP15.05■□□□□ -0
TPM3-201ENST00000271850 RBM42Q9BTD8 480 aaKnown RBP15.05■□□□□ -0
TPM3-201ENST00000271850 RICTORQ6R327 1708 aa15.05■□□□□ -0
TPM3-201ENST00000271850 SIGLEC1Q9BZZ2 1709 aa15.04■□□□□ -0
TPM3-201ENST00000271850 ARHGEF40Q8TER5 1519 aa15.03■□□□□ -0
TPM3-201ENST00000271850 ARHGAP35Q9NRY4 1499 aa15.03■□□□□ -0
TPM3-201ENST00000271850 BCORL1Q5H9F3 1711 aa15.03■□□□□ -0
TPM3-201ENST00000271850 PTPRMP28827 1452 aa15.02■□□□□ -0
TPM3-201ENST00000271850 AKNAQ7Z591 1439 aa15.02■□□□□ -0
TPM3-201ENST00000271850 FANCAO15360 1455 aa15.01□□□□□ -0.01
TPM3-201ENST00000271850 MADDQ8WXG6 1647 aa15□□□□□ -0.01
TPM3-201ENST00000271850 PLEKHD1A6NEE1 506 aa15□□□□□ -0.01
TPM3-201ENST00000271850 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
TPM3-201ENST00000271850 DENND4BO75064 1496 aaPredicted RBP15□□□□□ -0.01
TPM3-201ENST00000271850 ZMYM4Q5VZL5 1548 aa14.98□□□□□ -0.01
TPM3-201ENST00000271850 YEATS2Q9ULM3 1422 aa14.98□□□□□ -0.01
TPM3-201ENST00000271850 LRRIQ1Q96JM4 1722 aa14.97□□□□□ -0.01
TPM3-201ENST00000271850 CFAP74Q9C0B2 1584 aa14.96□□□□□ -0.01
TPM3-201ENST00000271850 KIF14Q15058 1648 aa14.95□□□□□ -0.02
TPM3-201ENST00000271850 HECW1Q76N89 1606 aa14.95□□□□□ -0.02
TPM3-201ENST00000271850 PLCH2O75038 1416 aa14.94□□□□□ -0.02
TPM3-201ENST00000271850 FMN1Q68DA7 1419 aa14.92□□□□□ -0.02
TPM3-201ENST00000271850 POGZQ7Z3K3 1410 aa14.92□□□□□ -0.02
TPM3-201ENST00000271850 ZFYVE16Q7Z3T8 1539 aa14.92□□□□□ -0.02
TPM3-201ENST00000271850 UBTFP17480 764 aaKnown RBP14.92□□□□□ -0.02
TPM3-201ENST00000271850 LMTK3Q96Q04 1460 aa14.92□□□□□ -0.02
TPM3-201ENST00000271850 RIMS1Q86UR5 1692 aaKnown RBP14.92□□□□□ -0.02
TPM3-201ENST00000271850 SCAPERQ9BY12 1400 aa14.91□□□□□ -0.02
TPM3-201ENST00000271850 PCF11O94913 1555 aaKnown RBP14.9□□□□□ -0.02
TPM3-201ENST00000271850 ARID4BQ4LE39 1312 aaPredicted RBP14.9□□□□□ -0.02
TPM3-201ENST00000271850 MAGI2Q86UL8 1455 aa14.89□□□□□ -0.03
TPM3-201ENST00000271850 TROQ12816 1431 aaPredicted RBP14.88□□□□□ -0.03
TPM3-201ENST00000271850 MYO5CQ9NQX4 1742 aa14.88□□□□□ -0.03
TPM3-201ENST00000271850 KDM5CP41229 1560 aa14.85□□□□□ -0.03
TPM3-201ENST00000271850 ARHGEF12Q9NZN5 1544 aa14.84□□□□□ -0.03
TPM3-201ENST00000271850 MYCNP04198 464 aaPredicted RBP14.84□□□□□ -0.03
TPM3-201ENST00000271850 ATP1B4Q9UN42 357 aaPredicted RBP14.84□□□□□ -0.03
TPM3-201ENST00000271850 CDC42BPBQ9Y5S2 1711 aa14.83□□□□□ -0.04
TPM3-201ENST00000271850 POLA2Q14181 598 aa14.82□□□□□ -0.04
TPM3-201ENST00000271850 FER1L4A9Z1Z3 1794 aa14.82□□□□□ -0.04
TPM3-201ENST00000271850 CASKIN1Q8WXD9 1431 aa14.82□□□□□ -0.04
TPM3-201ENST00000271850 ATP10AO60312 1499 aa14.82□□□□□ -0.04
TPM3-201ENST00000271850 EFCAB2Q5VUJ9 269 aa14.81□□□□□ -0.04
TPM3-201ENST00000271850 CHRDL2Q6WN34 429 aa14.81□□□□□ -0.04
TPM3-201ENST00000271850 C9orf84Q5VXU9 1444 aa14.81□□□□□ -0.04
TPM3-201ENST00000271850 ARHGAP5Q13017 1502 aa14.81□□□□□ -0.04
TPM3-201ENST00000271850 HSPA2P54652 639 aa14.8□□□□□ -0.04
TPM3-201ENST00000271850 MLECQ14165 292 aa14.8□□□□□ -0.04
TPM3-201ENST00000271850 AFAP1Q8N556 730 aa14.8□□□□□ -0.04
TPM3-201ENST00000271850 ZNF518AQ6AHZ1 1483 aa14.8□□□□□ -0.04
TPM3-201ENST00000271850 DIP2CQ9Y2E4 1556 aa14.8□□□□□ -0.04
TPM3-201ENST00000271850 PREX2Q70Z35 1606 aa14.79□□□□□ -0.04
TPM3-201ENST00000271850 ABCA6Q8N139 1617 aa14.78□□□□□ -0.04
TPM3-201ENST00000271850 ABCC1P33527 1531 aa14.78□□□□□ -0.04
TPM3-201ENST00000271850 TRAPPC8Q9Y2L5 1435 aa14.78□□□□□ -0.04
TPM3-201ENST00000271850 CLIP1P30622 1438 aa14.77□□□□□ -0.04
TPM3-201ENST00000271850 CDK11AQ9UQ88 783 aaPredicted RBP14.77□□□□□ -0.05
TPM3-201ENST00000271850 REREQ9P2R6 1566 aa14.76□□□□□ -0.05
TPM3-201ENST00000271850 CCDC18Q5T9S5 1454 aa14.76□□□□□ -0.05
TPM3-201ENST00000271850 CDC42BPAQ5VT25 1732 aa14.75□□□□□ -0.05
TPM3-201ENST00000271850 ITSN2Q9NZM3 1697 aa14.75□□□□□ -0.05
TPM3-201ENST00000271850 MLH3Q9UHC1 1453 aa14.75□□□□□ -0.05
TPM3-201ENST00000271850 FYCO1Q9BQS8 1478 aa14.74□□□□□ -0.05
TPM3-201ENST00000271850 CEBPAP49715 358 aaPredicted RBP14.73□□□□□ -0.05
TPM3-201ENST00000271850 FBXO41Q8TF61 875 aa14.73□□□□□ -0.05
TPM3-201ENST00000271850 KIDINS220Q9ULH0 1771 aa14.72□□□□□ -0.05
TPM3-201ENST00000271850 SAMD9LQ8IVG5 1584 aa14.71□□□□□ -0.05
TPM3-201ENST00000271850 AGLP35573 1532 aa14.7□□□□□ -0.06
TPM3-201ENST00000271850 GPATCH8Q9UKJ3 1502 aaKnown RBP14.7□□□□□ -0.06
TPM3-201ENST00000271850 PREX1Q8TCU6 1659 aa14.69□□□□□ -0.06
TPM3-201ENST00000271850 SYCP2Q9BX26 1530 aa14.67□□□□□ -0.06
TPM3-201ENST00000271850 C3P01024 1663 aa14.67□□□□□ -0.06
TPM3-201ENST00000271850 STRCQ7RTU9 1775 aa14.67□□□□□ -0.06
TPM3-201ENST00000271850 INO80Q9ULG1 1556 aaPredicted RBP14.62□□□□□ -0.07
TPM3-201ENST00000271850 PLXNC1O60486 1568 aa14.61□□□□□ -0.07
TPM3-201ENST00000271850 HNRNPMP52272 730 aaKnown RBP eCLIP14.61□□□□□ -0.077e-7■■■□□ 16.5
TPM3-201ENST00000271850 MYT1LQ9UL68 1186 aa14.61□□□□□ -0.07
TPM3-201ENST00000271850 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
TPM3-201ENST00000271850 UHRF1BP1Q6BDS2 1440 aa14.6□□□□□ -0.07
TPM3-201ENST00000271850 ZNF777Q9ULD5 760 aaPredicted RBP14.6□□□□□ -0.07
TPM3-201ENST00000271850 ZBTB12Q9Y330 459 aaPredicted RBP14.6□□□□□ -0.07
TPM3-201ENST00000271850 KIAA1107Q9UPP5 1409 aa14.59□□□□□ -0.07
TPM3-201ENST00000271850 SETD1BQ9UPS6 1966 aaKnown RBP14.59□□□□□ -0.07
TPM3-201ENST00000271850 ATP7AQ04656 1500 aa14.59□□□□□ -0.07
TPM3-201ENST00000271850 CERKQ8TCT0 537 aa14.58□□□□□ -0.08
TPM3-201ENST00000271850 MBD5Q9P267 1494 aa14.57□□□□□ -0.08
TPM3-201ENST00000271850 AKT1S1Q96B36 256 aa14.57□□□□□ -0.08
TPM3-201ENST00000271850 ZNF644Q9H582 1327 aaPredicted RBP14.57□□□□□ -0.08
TPM3-201ENST00000271850 SUPT6HQ7KZ85 1726 aaKnown RBP14.57□□□□□ -0.08
TPM3-201ENST00000271850 SPAG9O60271 1321 aaKnown RBP14.56□□□□□ -0.08
TPM3-201ENST00000271850 CCNB3Q8WWL7 1395 aa14.56□□□□□ -0.08
TPM3-201ENST00000271850 MROH2AA6NES4 1674 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms