RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RIMBP3CA6NJZ7 1639 aa18.05■□□□□ 0.48
SNX1-201ENST00000261889 RIMBP3BA6NNM3 1639 aa18.05■□□□□ 0.48
SNX1-201ENST00000261889 HECW1Q76N89 1606 aa18.05■□□□□ 0.48
SNX1-201ENST00000261889 RIMBP3Q9UFD9 1639 aa18.05■□□□□ 0.48
SNX1-201ENST00000261889 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
SNX1-201ENST00000261889 UHRF1BP1LA0JNW5 1464 aa18.05■□□□□ 0.48
SNX1-201ENST00000261889 ARHGEF11O15085 1522 aa18.04■□□□□ 0.48
SNX1-201ENST00000261889 C11orf95C9JLR9 678 aaPredicted RBP18.04■□□□□ 0.48
SNX1-201ENST00000261889 TIAM1Q13009 1591 aa18.03■□□□□ 0.48
SNX1-201ENST00000261889 WASHC2AQ641Q2 1341 aa18.02■□□□□ 0.48
SNX1-201ENST00000261889 ADCY10Q96PN6 1610 aa18.01■□□□□ 0.47
SNX1-201ENST00000261889 NUP153P49790 1475 aaKnown RBP18.01■□□□□ 0.47
SNX1-201ENST00000261889 CCER2I3L3R5 266 aa18.01■□□□□ 0.47
SNX1-201ENST00000261889 PTPRKQ15262 1439 aa18.01■□□□□ 0.47
SNX1-201ENST00000261889 ABCC2Q92887 1545 aa17.99■□□□□ 0.47
SNX1-201ENST00000261889 MRS2Q9HD23 443 aa17.99■□□□□ 0.47
SNX1-201ENST00000261889 MTUS2Q5JR59 1369 aa17.98■□□□□ 0.47
SNX1-201ENST00000261889 SALL2Q9Y467 1007 aaPredicted RBP17.98■□□□□ 0.47
SNX1-201ENST00000261889 PLB1Q6P1J6 1458 aa17.97■□□□□ 0.47
SNX1-201ENST00000261889 CCDC18Q5T9S5 1454 aa17.95■□□□□ 0.46
SNX1-201ENST00000261889 EPRSP07814 1512 aaKnown RBP17.95■□□□□ 0.46
SNX1-201ENST00000261889 MAGI3Q5TCQ9 1506 aa17.94■□□□□ 0.46
SNX1-201ENST00000261889 KDM5BQ9UGL1 1544 aa17.93■□□□□ 0.46
SNX1-201ENST00000261889 ZCCHC11Q5TAX3 1644 aaKnown RBP17.93■□□□□ 0.46
SNX1-201ENST00000261889 PAK3O75914 559 aaPredicted RBP17.92■□□□□ 0.46
SNX1-201ENST00000261889 UACAQ9BZF9 1416 aa17.92■□□□□ 0.46
SNX1-201ENST00000261889 PTPRGP23470 1445 aa17.91■□□□□ 0.46
SNX1-201ENST00000261889 L3MBTL2Q969R5 705 aa17.91■□□□□ 0.46
SNX1-201ENST00000261889 ATP10BO94823 1461 aa17.88■□□□□ 0.45
SNX1-201ENST00000261889 NPM2Q86SE8 214 aaKnown RBP17.87■□□□□ 0.45
SNX1-201ENST00000261889 CDK13Q14004 1512 aaKnown RBP17.86■□□□□ 0.45
SNX1-201ENST00000261889 EIF4G2P78344 907 aaKnown RBP eCLIP17.86■□□□□ 0.45
SNX1-201ENST00000261889 FGD6Q6ZV73 1430 aa17.85■□□□□ 0.45
SNX1-201ENST00000261889 EHBP1L1Q8N3D4 1523 aa17.84■□□□□ 0.45
SNX1-201ENST00000261889 DEKP35659 375 aaKnown RBP17.83■□□□□ 0.45
SNX1-201ENST00000261889 NBPF8Q3BBV2 869 aa17.83■□□□□ 0.45
SNX1-201ENST00000261889 PRKRIP1Q9H875 184 aaPredicted RBP17.81■□□□□ 0.44
SNX1-201ENST00000261889 PPP4R2Q9NY27 417 aa17.81■□□□□ 0.44
SNX1-201ENST00000261889 AKNAQ7Z591 1439 aa17.81■□□□□ 0.44
SNX1-201ENST00000261889 SKAP1Q86WV1 359 aa17.8■□□□□ 0.44
SNX1-201ENST00000261889 ZNF644Q9H582 1327 aaPredicted RBP17.79■□□□□ 0.44
SNX1-201ENST00000261889 RTN4Q9NQC3 1192 aaKnown RBP17.79■□□□□ 0.44
SNX1-201ENST00000261889 SUPT6HQ7KZ85 1726 aaKnown RBP17.78■□□□□ 0.44
SNX1-201ENST00000261889 MPHOSPH9Q99550 1183 aa17.78■□□□□ 0.44
SNX1-201ENST00000261889 NAIPQ13075 1403 aa17.77■□□□□ 0.44
SNX1-201ENST00000261889 TIMELESSQ9UNS1 1208 aa17.77■□□□□ 0.44
SNX1-201ENST00000261889 KIF14Q15058 1648 aa17.76■□□□□ 0.43
SNX1-201ENST00000261889 ZNF777Q9ULD5 760 aaPredicted RBP17.75■□□□□ 0.43
SNX1-201ENST00000261889 FANCIQ9NVI1 1328 aa17.75■□□□□ 0.43
SNX1-201ENST00000261889 ABCC10Q5T3U5 1492 aa17.74■□□□□ 0.43
SNX1-201ENST00000261889 CCDC136Q96JN2 1154 aa17.73■□□□□ 0.43
SNX1-201ENST00000261889 CDC42BPAQ5VT25 1732 aa17.73■□□□□ 0.43
SNX1-201ENST00000261889 TROQ12816 1431 aaPredicted RBP17.72■□□□□ 0.43
SNX1-201ENST00000261889 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
SNX1-201ENST00000261889 KIF7Q2M1P5 1343 aa17.71■□□□□ 0.43
SNX1-201ENST00000261889 KDM2AQ9Y2K7 1162 aa17.71■□□□□ 0.43
SNX1-201ENST00000261889 NCOA2Q15596 1464 aa17.71■□□□□ 0.43
SNX1-201ENST00000261889 ABCA9Q8IUA7 1624 aa17.71■□□□□ 0.43
SNX1-201ENST00000261889 HFM1A2PYH4 1435 aa17.69■□□□□ 0.42
SNX1-201ENST00000261889 NOP58Q9Y2X3 529 aaKnown RBP17.69■□□□□ 0.42
SNX1-201ENST00000261889 LAS1LQ9Y4W2 734 aaKnown RBP17.69■□□□□ 0.42
SNX1-201ENST00000261889 PREX2Q70Z35 1606 aa17.68■□□□□ 0.42
SNX1-201ENST00000261889 GLI2P10070 1586 aa17.68■□□□□ 0.42
SNX1-201ENST00000261889 CDC42BPBQ9Y5S2 1711 aa17.68■□□□□ 0.42
SNX1-201ENST00000261889 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.67■□□□□ 0.42
SNX1-201ENST00000261889 ITSN2Q9NZM3 1697 aa17.67■□□□□ 0.42
SNX1-201ENST00000261889 TTC37Q6PGP7 1564 aa17.67■□□□□ 0.42
SNX1-201ENST00000261889 KDM6BO15054 1643 aa17.67■□□□□ 0.42
SNX1-201ENST00000261889 CCDC7Q96M83 1385 aa17.67■□□□□ 0.42
SNX1-201ENST00000261889 PTPN23Q9H3S7 1636 aa17.67■□□□□ 0.42
SNX1-201ENST00000261889 WDR7Q9Y4E6 1490 aa17.66■□□□□ 0.42
SNX1-201ENST00000261889 ARAP3Q8WWN8 1544 aa17.66■□□□□ 0.42
SNX1-201ENST00000261889 MAP3K4Q9Y6R4 1608 aa17.65■□□□□ 0.42
SNX1-201ENST00000261889 CNTLNQ9NXG0 1405 aa17.64■□□□□ 0.41
SNX1-201ENST00000261889 MYOM3Q5VTT5 1437 aa17.63■□□□□ 0.41
SNX1-201ENST00000261889 MYO5CQ9NQX4 1742 aa17.63■□□□□ 0.41
SNX1-201ENST00000261889 KIF13AQ9H1H9 1805 aa17.63■□□□□ 0.41
SNX1-201ENST00000261889 DENND4BO75064 1496 aaPredicted RBP17.63■□□□□ 0.41
SNX1-201ENST00000261889 TCOF1Q13428 1488 aaKnown RBP17.63■□□□□ 0.41
SNX1-201ENST00000261889 DNAJC5Q9H3Z4 198 aa17.63■□□□□ 0.41
SNX1-201ENST00000261889 ASXL2Q76L83 1435 aa17.61■□□□□ 0.41
SNX1-201ENST00000261889 DIP2BQ9P265 1576 aa17.61■□□□□ 0.41
SNX1-201ENST00000261889 ZBED9Q6R2W3 1325 aa17.6■□□□□ 0.41
SNX1-201ENST00000261889 PPRC1Q5VV67 1664 aaKnown RBP17.59■□□□□ 0.41
SNX1-201ENST00000261889 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.59■□□□□ 0.41
SNX1-201ENST00000261889 PLIN1O60240 522 aa17.59■□□□□ 0.41
SNX1-201ENST00000261889 TMC1Q8TDI8 760 aa17.59■□□□□ 0.41
SNX1-201ENST00000261889 GPATCH8Q9UKJ3 1502 aaKnown RBP17.58■□□□□ 0.41
SNX1-201ENST00000261889 IL27Q8NEV9 243 aa17.58■□□□□ 0.4
SNX1-201ENST00000261889 ANO8Q9HCE9 1232 aaPredicted RBP17.57■□□□□ 0.4
SNX1-201ENST00000261889 MIA2Q96PC5 1412 aa17.56■□□□□ 0.4
SNX1-201ENST00000261889 EXOC6Q8TAG9 804 aa17.56■□□□□ 0.4
SNX1-201ENST00000261889 CROCC2H7BZ55 1655 aa17.56■□□□□ 0.4
SNX1-201ENST00000261889 ANP32AP39687 249 aaKnown RBP17.56■□□□□ 0.4
SNX1-201ENST00000261889 SLC4A3P48751 1232 aa17.54■□□□□ 0.4
SNX1-201ENST00000261889 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
SNX1-201ENST00000261889 SAMD9LQ8IVG5 1584 aa17.53■□□□□ 0.4
SNX1-201ENST00000261889 RTL5Q5HYW3 569 aaPredicted RBP17.52■□□□□ 0.4
SNX1-201ENST00000261889 CDCA7LQ96GN5 454 aa17.51■□□□□ 0.39
SNX1-201ENST00000261889 NUDCQ9Y266 331 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms